Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Forward (+)

19369064 .. 19397679

Gene Structure 28616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG178700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACCCTAGGTTCTGCATTAAGTGAATTAGGCACAACTGATCAACAAAAACCAGGCTGCAGAGGAGGCAGGATGTGGGGTCGAAGGAGACACCAAGAAGACGATTCATCATTCAAATCGAAAAACTTCCACGCCGAGAGGAGGAGAAGGCAGAAGCTCGGTTCTGCATTAAGTGAATTAGGCACAACTGATCAACAAATACCAGGCTGCAGAGGAGGCAGGATGTGGGGTCGAAAGAGACACCAAGAAGACGATCCATCATTCAAATCGAAAAACCTCCACGCTGAGAGGAGGAGAAGGCAGAAGCTCGGTGATAGGCTACTAATACTGCGTTCATTAGTCCCAATAATTACAAATGCAAGTACTCAATGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

125

Amino Acids

14.31

Weight (kDa)

11.18

Isoelectric Point (pI)

70.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	115, 265
AjnI	CCWGG	2 cut(s)	52, 202
AluBI	AGCT	2 cut(s)	157, 307
AluI	AGCT	2 cut(s)	157, 307
Alw26I	GTCTC	2 cut(s)	82, 232
AlwI	GGATC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	57, 207
Asp700I	GAANNNNTTC	1 cut(s)	125
AspA2I	CCTAGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	323
AvrII	CCTAGG	1 cut(s)	7
BbsI	GAAGAC	2 cut(s)	105, 255
BbvI	GCAGC	2 cut(s)	44, 194
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	2 cut(s)	54, 204
BclI	TGATCA	2 cut(s)	40, 190
BcoDI	GTCTC	2 cut(s)	82, 232
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	2 cut(s)	58, 208
BisI	GCNGC	2 cut(s)	58, 208
BlnI	CCTAGG	1 cut(s)	7
BlsI	GCNGC	2 cut(s)	59, 209
BmcAI	AGTACT	1 cut(s)	364
Bme1390I	CCNGG	2 cut(s)	54, 204
BmrFI	CCNGG	2 cut(s)	54, 204
BpiI	GAAGAC	2 cut(s)	105, 255
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	54, 204
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	2 cut(s)	78, 228
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	6 cut(s)	78, 154, 157, 228, 304, 307
BseXI	GCAGC	2 cut(s)	44, 194
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	2 cut(s)	82, 232
BsmFI	GGGAC	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	40, 190, 253
BspCNI	CTCAG	1 cut(s)	277
BspMAI	CTGCAG	2 cut(s)	62, 212
BspPI	GGATC	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	3 cut(s)	40, 190, 253
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	54, 204
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	78, 228
BstKTI	GATC	3 cut(s)	43, 193, 256
BstMAI	GTCTC	2 cut(s)	82, 232
BstMBI	GATC	3 cut(s)	40, 190, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 216
BstNI	CCWGG	2 cut(s)	54, 204
BstSCI	CCNGG	2 cut(s)	52, 202
BstSFI	CTRYAG	2 cut(s)	58, 208
BstV1I	GCAGC	2 cut(s)	44, 194
BstV2I	GAAGAC	2 cut(s)	105, 255
BtsCI	GGATG	2 cut(s)	78, 228
Csp6I	GTAC	1 cut(s)	363
CviJI	RGCY	5 cut(s)	57, 157, 207, 307, 319
CviKI_1	RGCY	5 cut(s)	57, 157, 207, 307, 319
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	42, 192, 255
DpnII	GATC	3 cut(s)	40, 190, 253
Eco130I	CCWWGG	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	52, 202
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaqI	GGGAC	1 cut(s)	326
FbaI	TGATCA	2 cut(s)	40, 190
Fnu4HI	GCNGC	2 cut(s)	58, 208
FokI	GGATG	2 cut(s)	85, 235
Fsp4HI	GCNGC	2 cut(s)	58, 208
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	2 cut(s)	58, 208
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	78, 141, 291
HpyCH4V	TGCA	5 cut(s)	17, 60, 167, 210, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 216
HpyF3I	CTNAG	1 cut(s)	285
Ksp22I	TGATCA	2 cut(s)	40, 190
Kzo9I	GATC	3 cut(s)	40, 190, 253
LpnPI	CCDG	6 cut(s)	39, 55, 66, 189, 205, 216
Lsp1109I	GCAGC	2 cut(s)	44, 194
MaeI	CTAG	1 cut(s)	8
MalI	GATC	3 cut(s)	42, 192, 255
MboI	GATC	3 cut(s)	40, 190, 253
MboII	GAAGA	2 cut(s)	110, 260
MluCI	AATT	3 cut(s)	26, 176, 348
MnlI	CCTC	9 cut(s)	56, 59, 132, 135, 206, 209, 282, 285, 287
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	3 cut(s)	20, 170, 376
MspR9I	CCNGG	2 cut(s)	54, 204
MvaI	CCWGG	2 cut(s)	54, 204
MwoI	GCNNNNNNNGC	2 cut(s)	66, 216
NdeII	GATC	3 cut(s)	40, 190, 253
NmeAIII	GCCGAG	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	59, 209
Psp6I	CCWGG	2 cut(s)	52, 202
PspGI	CCWGG	2 cut(s)	52, 202
PstI	CTGCAG	2 cut(s)	62, 212
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	20, 170, 376
SatI	GCNGC	2 cut(s)	58, 208
Sau3AI	GATC	3 cut(s)	40, 190, 253
ScaI	AGTACT	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	54, 204
SetI	ASST	4 cut(s)	13, 159, 279, 309
SfcI	CTRYAG	2 cut(s)	58, 208
Sse9I	AATT	3 cut(s)	26, 176, 348
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	52, 202
StyI	CCWWGG	1 cut(s)	7
TaqI	TCGA	4 cut(s)	82, 119, 232, 269
TasI	AATT	3 cut(s)	26, 176, 348
TatI	WGTACW	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	3 cut(s)	20, 170, 376
Tru9I	TTAA	3 cut(s)	20, 170, 376
TseI	GCWGC	2 cut(s)	57, 207
TspDTI	ATGAA	2 cut(s)	96, 324
XmaJI	CCTAGG	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.