Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Reverse (-)

39436354 .. 39437242

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1309600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGACTCTGTGAGTTGTGTGTTGGATGAATTATGCTTAGCAGAAGGAGGCAGCCGAGGGGGACGGATGGGTCGAAGGAGACACAACAATGGCGGCGAATTCAAATCCAAAAATCTCGTTGCTGAGAGGAAGAGAAGGGAGAAGCTCAGTGGAAGGCTCCTTGCACTACGCGCATTGATGAACAAAGCAACCATTGTTGAGGATGCCATCACGTACATCCAGGAGCTGCAGCAGAAAGTAAACTTCCTCAAAGACCAGCTTTTTGAGATGGAAGAATCATCAGAAGAAACACTGCAGCCGAACAAAGAAGAAACTCATGCTGCTGAAGAGATGAAGAAATTCGGGATTCAGACAGAGGTGAATGTGACTAAGATTGATGGGAACAAACTTTGGGTGAAGACAGTCCTCGAGAAGAAACGAGGCGGGTTCACAAAATTGATGGAAGCCATGACCGGCTTTGGCTTCGAACTCACCGACACCAGCGTCACTACCTCCAACGGAGTAATGATGGTTTCATCCTGTATAACGGTAAGTCACGGTAAAAACAAAGAAAGCTCTGAAATTCTACCAGCACCAGAAGTTAATATAAATTCTAATGAATTTCAGGGATTCTGCTGTGATAAGCTCGAAGTTGAGCAAACCCGGGAATTGATGCTGGAGATCATCAATGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

226

Amino Acids

25.24

Weight (kDa)

5.62

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	69, 482
AccII	CGCG	1 cut(s)	171
AciI	CCGC	2 cut(s)	93, 423
AcsI	RAATTY	5 cut(s)	98, 338, 561, 589, 599
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	5 cut(s)	145, 226, 259, 555, 625
AluI	AGCT	5 cut(s)	145, 226, 259, 555, 625
Alw26I	GTCTC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	2 cut(s)	407, 642
ApeKI	GCWGC	5 cut(s)	51, 226, 229, 295, 320
ApoI	RAATTY	5 cut(s)	98, 338, 561, 589, 599
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	173
AsuC2I	CCSGG	2 cut(s)	643, 644
AsuHPI	GGTGA	3 cut(s)	370, 406, 463
AsuII	TTCGAA	1 cut(s)	465
AvaI	CYCGRG	2 cut(s)	407, 642
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	5 cut(s)	63, 213, 241, 307, 307
BccI	CCATC	6 cut(s)	61, 215, 262, 371, 433, 502
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	2 cut(s)	643, 644
BcoDI	GTCTC	1 cut(s)	73
BfmI	CTRYAG	2 cut(s)	227, 293
BisI	GCNGC	6 cut(s)	52, 94, 227, 230, 296, 321
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	6 cut(s)	53, 95, 228, 231, 297, 322
Bme1390I	CCNGG	3 cut(s)	221, 643, 644
BmeT110I	CYCGRG	2 cut(s)	407, 642
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	3 cut(s)	221, 643, 644
BmsI	GCATC	2 cut(s)	193, 642
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	677
Bpu1102I	GCTNAGC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	465
BpuMI	CCSGG	2 cut(s)	643, 644
BsaAI	YACGTR	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	55, 642
Bse118I	RCCGGY	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	55, 642
BseGI	GGATG	5 cut(s)	31, 72, 208, 216, 515
BseMII	CTCAG	2 cut(s)	114, 160
BseXI	GCAGC	5 cut(s)	63, 213, 241, 307, 307
Bsh1236I	CGCG	1 cut(s)	171
BsiHKCI	CYCGRG	2 cut(s)	407, 642
BsiSI	CCGG	2 cut(s)	453, 643
BslFI	GGGAC	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	75
BsoBI	CYCGRG	2 cut(s)	407, 642
Bsp119I	TTCGAA	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	660
Bsp1720I	GCTNAGC	1 cut(s)	37
BspACI	CCGC	2 cut(s)	93, 423
BspCNI	CTCAG	2 cut(s)	115, 159
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	2 cut(s)	231, 297
BspT104I	TTCGAA	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	55, 642
BssMI	GATC	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	403, 529, 539
Bst6I	CTCTTC	2 cut(s)	125, 321
BstBAI	YACGTR	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	465
BstDEI	CTNAG	4 cut(s)	37, 123, 146, 369
BstF5I	GGATG	5 cut(s)	31, 72, 208, 216, 515
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	219, 641, 642
BstSFI	CTRYAG	2 cut(s)	227, 293
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	5 cut(s)	63, 213, 241, 307, 307
BstV2I	GAAGAC	1 cut(s)	404
BtsCI	GGATG	5 cut(s)	31, 72, 208, 216, 515
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	154, 290
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	452
Cfr9I	CCCGGG	1 cut(s)	642
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	317, 448
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	4 cut(s)	37, 123, 146, 369
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
DrdI	GACNNNNNNGTC	2 cut(s)	69, 482
DseDI	GACNNNNNNGTC	2 cut(s)	69, 482
Eam1104I	CTCTTC	2 cut(s)	125, 321
EarI	CTCTTC	2 cut(s)	125, 321
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	2 cut(s)	407, 642
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	320, 451
FaiI	YATR	7 cut(s)	34, 318, 449, 524, 587, 674, 676
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	2 cut(s)	316, 447
FauI	CCCGC	1 cut(s)	416
Fnu4HI	GCNGC	6 cut(s)	52, 94, 227, 230, 296, 321
FokI	GGATG	5 cut(s)	38, 79, 203, 215, 502
Fsp4HI	GCNGC	6 cut(s)	52, 94, 227, 230, 296, 321
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	6 cut(s)	52, 94, 227, 230, 296, 321
GsuI	CTGGAG	1 cut(s)	677
HapII	CCGG	2 cut(s)	453, 643
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	320, 451
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	4 cut(s)	5, 275, 346, 609
HpaII	CCGG	2 cut(s)	453, 643
HphI	GGTGA	3 cut(s)	370, 406, 463
Hpy166II	GTNNAC	2 cut(s)	241, 429
Hpy188I	TCNGA	3 cut(s)	283, 351, 559
Hpy188III	TCNNGA	2 cut(s)	343, 409
Hpy8I	GTNNAC	2 cut(s)	241, 429
HpyAV	CCTTC	4 cut(s)	38, 69, 129, 147
HpyCH4III	ACNGT	3 cut(s)	403, 529, 539
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	164, 229, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	37, 123, 146, 369
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	320, 451
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	660
LmnI	GCTCC	2 cut(s)	162, 223
Lsp1109I	GCAGC	5 cut(s)	63, 213, 241, 307, 307
LweI	GCATC	2 cut(s)	193, 642
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	364, 484, 533
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	8 cut(s)	142, 284, 296, 320, 338, 346, 409, 424
MluCI	AATT	8 cut(s)	29, 98, 338, 434, 561, 589, 599, 647
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	9 cut(s)	41, 50, 120, 193, 257, 349, 413, 416, 502
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	2 cut(s)	453, 643
MspR9I	CCNGG	3 cut(s)	221, 643, 644
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	2 cut(s)	643, 644
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	2 cut(s)	320, 451
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	3 cut(s)	364, 484, 533
NspV	TTCGAA	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	2 cut(s)	70, 471
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	275, 346, 609
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	53, 95, 228, 231, 297, 322
Ppu21I	YACGTR	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	158
PstI	CTGCAG	2 cut(s)	231, 297
PstNI	CAGNNNCTG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	6 cut(s)	52, 94, 227, 230, 296, 321
Sau3AI	GATC	1 cut(s)	660
ScrFI	CCNGG	3 cut(s)	221, 643, 644
SetI	ASST	8 cut(s)	147, 215, 228, 261, 360, 494, 557, 627
SfaNI	GCATC	2 cut(s)	193, 642
SfcI	CTRYAG	2 cut(s)	227, 293
Sfr274I	CTCGAG	1 cut(s)	407
SfuI	TTCGAA	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	407
SmaI	CCCGGG	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	8 cut(s)	29, 98, 338, 434, 561, 589, 599, 647
SsiI	CCGC	2 cut(s)	93, 423
StyD4I	CCNGG	3 cut(s)	219, 641, 642
TaaI	ACNGT	3 cut(s)	403, 529, 539
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	73, 408, 465, 627
TasI	AATT	8 cut(s)	29, 98, 338, 434, 561, 589, 599, 647
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	275, 346, 609
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	154, 297
TseFI	GTSAC	3 cut(s)	364, 484, 533
TseI	GCWGC	5 cut(s)	51, 226, 229, 295, 320
Tsp45I	GTSAC	3 cut(s)	364, 484, 533
TspDTI	ATGAA	5 cut(s)	42, 194, 347, 504, 612
TspGWI	ACGGA	2 cut(s)	79, 513
TspMI	CCCGGG	1 cut(s)	642
TspRI	CASTG	2 cut(s)	154, 297
XapI	RAATTY	5 cut(s)	98, 338, 561, 589, 599
XhoI	CTCGAG	1 cut(s)	407
XmaI	CCCGGG	1 cut(s)	642
XmnI	GAANNNNTTC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.