Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010871.1

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Reverse (-)

84138 .. 85163

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010871.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgcttgttgatcattatctgaacgatatggaatttgtaggctctgccttggatgagctatgcctaagtcctgatcaagaaggcagcagccaacaaggtaggatgggtcgaaggagatacaacgacgaggaagatgattcgatttacaaatccaagaacctgaaagccgaaaggaagagaagagcgaagcttagtgacaggctcctcaagctacgatcattgatgaataaagcaactatcgttgaggactcaatcacttatatctatgagctgcagaagaatgtgaacatgctccaggaccagctttttgagatggaagcattgtcttcactggaggtgccggagccaaagccgaggaaagaagaaattgatgctgcagaagagatgaagaaatatgggattcaggcggaggttagtgtgactcagattgatgggaacaaactttggataaaggcggttcttgcgaagaaaagaggtggattcaccaaattgatagaggccatgactgagtttggctttgaactcactgataccagtgtcactacctccaatggagcaatgcttgtttcatcctgtgttattggattccattgcgatacacttgcagtcgagcaaaccagggaattgatgctggatatcattaatggaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

217

Amino Acids

24.64

Weight (kDa)

5.02

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	2 cut(s)	407, 455
AcsI	RAATTY	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	521
AjnI	CCWGG	2 cut(s)	294, 617
AluBI	AGCT	5 cut(s)	58, 190, 211, 271, 304
AluI	AGCT	5 cut(s)	58, 190, 211, 271, 304
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	4 cut(s)	84, 87, 271, 374
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AseI	ATTAAT	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	298
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	96, 99, 258, 361
BccI	CCATC	3 cut(s)	97, 307, 425
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	2 cut(s)	296, 619
BclI	TGATCA	2 cut(s)	10, 73
BfmI	CTRYAG	2 cut(s)	272, 375
BisI	GCNGC	4 cut(s)	85, 88, 272, 375
BlsI	GCNGC	4 cut(s)	86, 89, 273, 376
Bme1390I	CCNGG	2 cut(s)	296, 619
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	3 cut(s)	203, 339, 345
BmrFI	CCNGG	2 cut(s)	296, 619
BmsI	GCATC	2 cut(s)	361, 618
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	2 cut(s)	278, 353
BpuEI	CTTGAG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	48, 353, 618
Bse1I	ACTGG	2 cut(s)	336, 534
Bse3DI	GCAATG	2 cut(s)	564, 589
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	296, 619
BseDI	CCNNGG	3 cut(s)	48, 353, 618
BseGI	GGATG	3 cut(s)	58, 108, 569
BseJI	GATNNNNATC	1 cut(s)	15
BseMI	GCAATG	2 cut(s)	564, 589
BseMII	CTCAG	2 cut(s)	437, 498
BseNI	ACTGG	2 cut(s)	336, 534
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	4 cut(s)	96, 99, 258, 361
BshFI	GGCC	1 cut(s)	500
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	341
BsnI	GGCC	1 cut(s)	500
Bsp143I	GATC	3 cut(s)	10, 73, 215
BspACI	CCGC	2 cut(s)	407, 455
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	2 cut(s)	436, 499
BspLI	GGNNCC	3 cut(s)	203, 339, 345
BspMAI	CTGCAG	2 cut(s)	276, 379
BspQI	GCTCTTC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	2 cut(s)	564, 589
BsrI	ACTGG	2 cut(s)	336, 534
BssECI	CCNNGG	3 cut(s)	48, 353, 618
BssMI	GATC	3 cut(s)	10, 73, 215
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	296, 619
Bst6I	CTCTTC	3 cut(s)	170, 175, 375
BstDEI	CTNAG	4 cut(s)	65, 191, 423, 507
BstF5I	GGATG	3 cut(s)	58, 108, 569
BstKTI	GATC	3 cut(s)	13, 76, 218
BstMBI	GATC	3 cut(s)	10, 73, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 461
BstNI	CCWGG	2 cut(s)	296, 619
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	294, 617
BstSFI	CTRYAG	2 cut(s)	272, 375
BstV1I	GCAGC	4 cut(s)	96, 99, 258, 361
BstV2I	GAAGAC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	500
BtsCI	GGATG	3 cut(s)	58, 108, 569
BtsIMutI	CAGTG	3 cut(s)	329, 525, 541
Cfr13I	GGNCC	1 cut(s)	298
CviAII	CATG	2 cut(s)	289, 502
DdeI	CTNAG	4 cut(s)	65, 191, 423, 507
DpnI	GATC	3 cut(s)	12, 75, 217
DpnII	GATC	3 cut(s)	10, 73, 215
Eam1104I	CTCTTC	3 cut(s)	170, 175, 375
EarI	CTCTTC	3 cut(s)	170, 175, 375
EciI	GGCGGA	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	294, 617
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	292, 505
FaiI	YATR	8 cut(s)	29, 61, 261, 267, 290, 396, 503, 652
FatI	CATG	2 cut(s)	288, 501
FbaI	TGATCA	2 cut(s)	10, 73
Fnu4HI	GCNGC	4 cut(s)	85, 88, 272, 375
FokI	GGATG	3 cut(s)	65, 115, 556
Fsp4HI	GCNGC	4 cut(s)	85, 88, 272, 375
GluI	GCNGC	4 cut(s)	85, 88, 272, 375
GsuI	CTGGAG	2 cut(s)	278, 353
HaeIII	GGCC	1 cut(s)	500
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	2 cut(s)	292, 505
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	6 cut(s)	137, 248, 400, 421, 480, 585
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	21, 426
Hpy188III	TCNNGA	2 cut(s)	71, 77
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	74, 105
HpyCH4V	TGCA	3 cut(s)	274, 377, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 461
HpyF3I	CTNAG	4 cut(s)	65, 191, 423, 507
Hsp92II	CATG	2 cut(s)	292, 505
Ksp22I	TGATCA	2 cut(s)	10, 73
Kzo9I	GATC	3 cut(s)	10, 73, 215
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	4 cut(s)	207, 297, 343, 554
Lsp1109I	GCAGC	4 cut(s)	96, 99, 258, 361
LweI	GCATC	2 cut(s)	361, 618
MaeIII	GTNAC	3 cut(s)	194, 418, 538
MalI	GATC	3 cut(s)	12, 75, 217
MboI	GATC	3 cut(s)	10, 73, 215
MboII	GAAGA	9 cut(s)	143, 187, 192, 289, 318, 374, 392, 400, 478
MluCI	AATT	4 cut(s)	32, 366, 488, 623
MlyI	GAGTC	2 cut(s)	242, 415
MnlI	CCTC	9 cut(s)	121, 215, 238, 328, 348, 403, 467, 490, 556
MseI	TTAA	1 cut(s)	642
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	296, 619
MvaI	CCWGG	2 cut(s)	296, 619
MwoI	GCNNNNNNNGC	2 cut(s)	208, 461
NdeII	GATC	3 cut(s)	10, 73, 215
NlaIII	CATG	2 cut(s)	292, 505
NlaIV	GGNNCC	3 cut(s)	203, 339, 345
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	3 cut(s)	194, 418, 538
NspI	RCATGY	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	175
PfeI	GAWTC	4 cut(s)	137, 400, 480, 585
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	86, 89, 273, 376
PleI	GAGTC	2 cut(s)	242, 415
PpsI	GAGTC	2 cut(s)	242, 415
PshBI	ATTAAT	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	294, 617
PspGI	CCWGG	2 cut(s)	294, 617
PspN4I	GGNNCC	3 cut(s)	203, 339, 345
PspPI	GGNCC	1 cut(s)	298
PstI	CTGCAG	2 cut(s)	276, 379
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	4 cut(s)	85, 88, 272, 375
Sau3AI	GATC	3 cut(s)	10, 73, 215
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	242, 415
ScrFI	CCNGG	2 cut(s)	296, 619
SfaNI	GCATC	2 cut(s)	361, 618
SfcI	CTRYAG	2 cut(s)	272, 375
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	32, 366, 488, 623
SsiI	CCGC	2 cut(s)	407, 455
StyD4I	CCNGG	2 cut(s)	294, 617
StyI	CCWWGG	1 cut(s)	48
TaqI	TCGA	3 cut(s)	109, 140, 609
TasI	AATT	4 cut(s)	32, 366, 488, 623
TfiI	GAWTC	4 cut(s)	137, 400, 480, 585
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	3 cut(s)	336, 532, 541
TseFI	GTSAC	3 cut(s)	194, 418, 538
TseI	GCWGC	4 cut(s)	84, 87, 271, 374
Tsp45I	GTSAC	3 cut(s)	194, 418, 538
TspDTI	ATGAA	3 cut(s)	239, 401, 558
TspRI	CASTG	3 cut(s)	336, 532, 541
VpaK11BI	GGWCC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.