AT4G24110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011286
Physical Location & Seq
Reverse (-)
12519907 .. 12520898
992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24110.1

Sequence Viewer

Length: 753 bp
ATGTGTAGGTCGCCCGATTTCGAGCGTTATGTCGAGAAAGAGAGCTTAAAGGTTAAAGCTTTCTTCGTCCGGTTCACAGGTTTACCCACCCGAGGATTCTTACCGGATTCTCTCACTCTTCTCTACCCACCACGAATCAACGAAGCTGCTTTCGAGCTTGATGGGTCCAAGATCCGACCCGATTCCCCAGCTTTCGTGACGCTTCACAGAGTCGTGAAAGGAGGAGACGTGATTTACGGGTCAAGAGAACGTGTTCGGGTCTGGGAAGGGATCCGCTTCGAGGTGTACATGAGTGAGGAGAGGGTGATAAAAGGTATTTTCAGAAAAGACGAAGGAGACAAGTGGAAACTTGAGTGCGAGTGTGAGATGGAAGAGGAAGGAGCGGCGGAAGTTGTTGTTGCGGCGGAGGGACACGTGGCAACAGCGACGATGGCGAGGAAACATAGAAGAAGGAGAAAGCAAAAGATTGGGTTTGAGTGTTTGGAGGAGATACCGGAGGAGAGAGAGGAAGGGAGGGATTCTGACGGCGGCGTGTGTTTTTGCACGTGTAGCGGCGAATCTGACGACGGAGAGGGAGAGTGGGAAGAGGTGGAATGGACGGCTGAGATGGAGTCTGAGACAGAAGGAATGGGATGGGCCGTAGATTTGGGGATTTGGGTTATGTGTTTGGGTGTGGGCTATTTAGTGTCTAAAGCCTCTACCAAAACCTTGACAAGTGGGAGAAGAAGAAGGACAAGAAGAACCTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.61

Weight (kDa)

5.26

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 383
AciI CCGC 7 cut(s) 274, 383, 386, 401, 404, 528, 552
AclWI GGATC 3 cut(s) 166, 265, 278
AcvI CACGTG 2 cut(s) 415, 546
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 92, 280
AflIII ACRYGT 3 cut(s) 250, 412, 545
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 5 cut(s) 45, 59, 146, 157, 191
AluI AGCT 5 cut(s) 45, 59, 146, 157, 191
Alw26I GTCTC 3 cut(s) 219, 330, 611
AlwI GGATC 3 cut(s) 166, 265, 278
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 165, 636
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 165
BamHI GGATCC 1 cut(s) 270
BbrPI CACGTG 2 cut(s) 415, 546
BbvI GCAGC 1 cut(s) 133
BccI CCATC 5 cut(s) 155, 361, 424, 601, 627
BceAI ACGGC 3 cut(s) 541, 615, 623
BcoDI GTCTC 3 cut(s) 219, 330, 611
BisI GCNGC 5 cut(s) 147, 384, 402, 529, 553
BlsI GCNGC 5 cut(s) 148, 385, 403, 530, 554
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 165, 636
BmiI GGNNCC 2 cut(s) 166, 272
BpuEI CTTGAG 1 cut(s) 371
BsaAI YACGTR 2 cut(s) 415, 546
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 3 cut(s) 69, 103, 493
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 280
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 638
BseLI CCNNNNNNNGG 2 cut(s) 92, 280
BseMII CTCAG 2 cut(s) 594, 606
BseRI GAGGAG 4 cut(s) 237, 311, 500, 512
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 638
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 3 cut(s) 70, 104, 494
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 92, 280
BsmAI GTCTC 3 cut(s) 219, 330, 611
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 171, 270
BspACI CCGC 7 cut(s) 274, 383, 386, 401, 404, 528, 552
BspANI GGCC 1 cut(s) 638
BspCNI CTCAG 2 cut(s) 595, 607
BspLI GGNNCC 2 cut(s) 166, 272
BspPI GGATC 3 cut(s) 166, 265, 278
BsrBI CCGCTC 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 2 cut(s) 171, 270
Bst6I CTCTTC 3 cut(s) 123, 366, 579
BstAUI TGTACA 1 cut(s) 285
BstBAI YACGTR 2 cut(s) 415, 546
BstDEI CTNAG 2 cut(s) 603, 615
BstF5I GGATG 1 cut(s) 638
BstKTI GATC 2 cut(s) 174, 273
BstMAI GTCTC 3 cut(s) 219, 330, 611
BstMBI GATC 2 cut(s) 171, 270
BstMWI GCNNNNNNNGC 2 cut(s) 431, 549
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 171, 270
BstYI RGATCY 2 cut(s) 171, 270
BsuRI GGCC 1 cut(s) 638
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 638
Cfr13I GGNCC 2 cut(s) 165, 636
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 289
CviJI RGCY 9 cut(s) 45, 59, 146, 157, 191, 602, 638, 678, 695
CviKI_1 RGCY 9 cut(s) 45, 59, 146, 157, 191, 602, 638, 678, 695
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 603, 615
DpnI GATC 2 cut(s) 173, 272
DpnII GATC 2 cut(s) 171, 270
Eam1104I CTCTTC 3 cut(s) 123, 366, 579
EarI CTCTTC 3 cut(s) 123, 366, 579
EciI GGCGGA 2 cut(s) 401, 419
Eco47I GGWCC 1 cut(s) 165
Eco72I CACGTG 2 cut(s) 415, 546
Eco88I CYCGRG 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 1 cut(s) 292
FaiI YATR 4 cut(s) 30, 290, 444, 662
FaqI GGGAC 1 cut(s) 423
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 147, 384, 402, 529, 553
FokI GGATG 1 cut(s) 645
Fsp4HI GCNGC 5 cut(s) 147, 384, 402, 529, 553
GluI GCNGC 5 cut(s) 147, 384, 402, 529, 553
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 638
HapII CCGG 3 cut(s) 70, 104, 494
HgaI GACGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 8 cut(s) 96, 107, 135, 182, 210, 518, 557, 611
HpaII CCGG 3 cut(s) 70, 104, 494
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 3 cut(s) 75, 83, 286
Hpy188I TCNGA 5 cut(s) 176, 323, 523, 562, 616
Hpy188III TCNNGA 4 cut(s) 34, 196, 214, 243
Hpy8I GTNNAC 3 cut(s) 75, 83, 286
Hpy99I CGWCG 2 cut(s) 430, 569
HpyAV CCTTC 7 cut(s) 260, 326, 371, 444, 503, 617, 723
HpyCH4IV ACGT 4 cut(s) 228, 250, 414, 545
HpyCH4V TGCA 1 cut(s) 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 549
HpyF3I CTNAG 2 cut(s) 603, 615
HpySE526I ACGT 4 cut(s) 228, 250, 414, 545
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 2 cut(s) 171, 270
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 6 cut(s) 63, 83, 117, 201, 247, 507
Lsp1109I GCAGC 1 cut(s) 133
MaeII ACGT 4 cut(s) 228, 250, 414, 545
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 173, 272
MbiI CCGCTC 1 cut(s) 383
MboI GATC 2 cut(s) 171, 270
MboII GAAGA 9 cut(s) 55, 110, 383, 459, 596, 735, 738, 739, 750
MflI RGATCY 2 cut(s) 171, 270
MlyI GAGTC 2 cut(s) 219, 620
MmeI TCCRAC 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 2 cut(s) 47, 54
MspI CCGG 3 cut(s) 70, 104, 494
MwoI GCNNNNNNNGC 2 cut(s) 431, 549
NdeII GATC 2 cut(s) 171, 270
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 2 cut(s) 166, 272
NmuCI GTSAC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 6 cut(s) 96, 107, 135, 182, 518, 557
PkrI GCNGC 5 cut(s) 148, 385, 403, 530, 554
PleI GAGTC 2 cut(s) 218, 619
PmaCI CACGTG 2 cut(s) 415, 546
PmlI CACGTG 2 cut(s) 415, 546
PpsI GAGTC 2 cut(s) 218, 619
Ppu21I YACGTR 2 cut(s) 415, 546
PspCI CACGTG 2 cut(s) 415, 546
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 166, 272
PspPI GGNCC 2 cut(s) 165, 636
PsuI RGATCY 2 cut(s) 171, 270
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 2 cut(s) 47, 54
SatI GCNGC 5 cut(s) 147, 384, 402, 529, 553
Sau3AI GATC 2 cut(s) 171, 270
Sau96I GGNCC 2 cut(s) 165, 636
SchI GAGTC 2 cut(s) 219, 620
SinI GGWCC 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SsiI CCGC 7 cut(s) 274, 383, 386, 401, 404, 528, 552
TaiI ACGT 4 cut(s) 231, 253, 417, 548
TaqI TCGA 4 cut(s) 21, 33, 153, 279
TatI WGTACW 1 cut(s) 285
TauI GCSGC 4 cut(s) 386, 404, 531, 555
TfiI GAWTC 6 cut(s) 96, 107, 135, 182, 518, 557
Tru1I TTAA 2 cut(s) 47, 54
Tru9I TTAA 2 cut(s) 47, 54
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.