Rw7G007300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011286
Physical Location & Seq
Reverse (-)
6300424 .. 6301121
698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007300.1

Sequence Viewer

Length: 669 bp
ATGTGTAGGTCGACGGACTACCCCGGCTTTCGGGCCAGAAGAGAAGCCCTAAAGATTCAAGCTTTCTTCATACGGTTTTCGGGTTTGGATTCTCATAAGCCGTTACCGGAATCGCTCACGCTTTCGTATCTTCCAAGAATCAACGGCACCGCGCTCGAGATCGACGGGTCCAAGATCCGACCCGACTCGCCGGCTTTCGTGACGCTCCACCGCGCGGTGAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCGGTTCGGGCCGGCGACGGGGTCCAGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGTTGAAGGGGATTTTCAGGAAAGACGTGGGGCAGGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGGAGGAGGTCACGGCGGCGGAGGTGTGCCTGGAGGAGATCCCGGAGGTGGACGAGGAATCGGACGGCGGGTGTTGCTGCACTTGCGGGGAAATGGACGGTGGAGATTTGGAGGAGGATGGTGACGTGGAGGAGGAGTTGGAGATGGATGTGGATGTGGAGGGAGTGAGATGGGCTGTGGATGTGGGCTTTTGGGTCATGTGTTTGGGTGTGGGCTACTTGGTTTCTAAGGCCTCATCCAAAAGCTTGAGACGCAGGAGATTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.73

Weight (kDa)

4.79

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 11
AccII CGCG 4 cut(s) 152, 213, 215, 259
AciI CCGC 9 cut(s) 150, 211, 215, 259, 266, 416, 419, 468, 486
AclWI GGATC 2 cut(s) 169, 433
AfiI CCNNNNNNNGG 5 cut(s) 30, 214, 282, 295, 448
AgsI TTSAA 2 cut(s) 59, 325
AjiI CACGTC 2 cut(s) 346, 526
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 2 cut(s) 62, 645
AluI AGCT 2 cut(s) 62, 645
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 2 cut(s) 169, 433
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 3 cut(s) 33, 273, 630
ApeKI GCWGC 1 cut(s) 477
AspLEI GCGC 2 cut(s) 154, 215
AspS9I GGNCC 4 cut(s) 33, 168, 273, 286
AsuC2I CCSGG 2 cut(s) 24, 443
AsuHPI GGTGA 3 cut(s) 229, 241, 533
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 2 cut(s) 168, 286
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 464
BccI CCATC 3 cut(s) 512, 538, 564
BceAI ACGGC 4 cut(s) 85, 160, 429, 481
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 1 cut(s) 431
BcnI CCSGG 2 cut(s) 24, 443
BcoDI GTCTC 1 cut(s) 643
BisI GCNGC 2 cut(s) 417, 478
BlsI GCNGC 2 cut(s) 418, 479
Bme1390I CCNGG 3 cut(s) 24, 431, 443
Bme18I GGWCC 2 cut(s) 168, 286
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 2 cut(s) 346, 526
BmgT120I GGNCC 4 cut(s) 33, 168, 273, 286
BmiI GGNNCC 3 cut(s) 148, 169, 287
BmrFI CCNGG 3 cut(s) 24, 431, 443
BpmI CTGGAG 2 cut(s) 404, 452
BpuEI CTTGAG 1 cut(s) 667
BpuMI CCSGG 2 cut(s) 24, 443
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 6 cut(s) 305, 335, 359, 389, 521, 551
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 214, 282, 295, 448
Bse118I RCCGGY 2 cut(s) 190, 275
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 5 cut(s) 523, 553, 559, 586, 635
BseLI CCNNNNNNNGG 5 cut(s) 30, 214, 282, 295, 448
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 6 cut(s) 326, 419, 449, 527, 545, 548
BseXI GCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 463
Bsh1236I CGCG 4 cut(s) 152, 213, 215, 259
BshFI GGCC 3 cut(s) 35, 275, 632
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 5 cut(s) 24, 107, 191, 276, 443
BslI CCNNNNNNNGG 5 cut(s) 30, 214, 282, 295, 448
BsmAI GTCTC 1 cut(s) 643
BsmBI CGTCTC 1 cut(s) 643
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 3 cut(s) 35, 275, 632
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 3 cut(s) 159, 174, 438
BspACI CCGC 9 cut(s) 150, 211, 215, 259, 266, 416, 419, 468, 486
BspANI GGCC 3 cut(s) 35, 275, 632
BspFNI CGCG 4 cut(s) 152, 213, 215, 259
BspLI GGNNCC 3 cut(s) 148, 169, 287
BspPI GGATC 2 cut(s) 169, 433
BspT107I GGYRCC 1 cut(s) 146
BsrFI RCCGGY 2 cut(s) 190, 275
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 2 cut(s) 190, 275
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 159, 174, 438
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 75, 500
Bst6I CTCTTC 1 cut(s) 34
BstC8I GCNNGC 3 cut(s) 192, 277, 380
BstDEI CTNAG 1 cut(s) 627
BstF5I GGATG 5 cut(s) 523, 553, 559, 586, 635
BstFNI CGCG 4 cut(s) 152, 213, 215, 259
BstHHI GCGC 2 cut(s) 154, 215
BstKTI GATC 3 cut(s) 162, 177, 441
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 3 cut(s) 159, 174, 438
BstMWI GCNNNNNNNGC 5 cut(s) 221, 272, 474, 483, 651
BstNI CCWGG 1 cut(s) 431
BstSCI CCNGG 3 cut(s) 22, 429, 441
BstUI CGCG 4 cut(s) 152, 213, 215, 259
BstV1I GCAGC 1 cut(s) 464
BstX2I RGATCY 2 cut(s) 174, 438
BstYI RGATCY 2 cut(s) 174, 438
BsuRI GGCC 3 cut(s) 35, 275, 632
BtrI CACGTC 2 cut(s) 346, 526
BtsCI GGATG 5 cut(s) 523, 553, 559, 586, 635
Cac8I GCNNGC 3 cut(s) 192, 277, 380
CfoI GCGC 2 cut(s) 154, 215
Cfr10I RCCGGY 2 cut(s) 190, 275
Cfr13I GGNCC 4 cut(s) 33, 168, 273, 286
CseI GACGC 2 cut(s) 211, 660
CviAII CATG 1 cut(s) 598
DdeI CTNAG 1 cut(s) 627
DpnI GATC 3 cut(s) 161, 176, 440
DpnII GATC 3 cut(s) 159, 174, 438
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 434
Eco147I AGGCCT 1 cut(s) 632
Eco47I GGWCC 2 cut(s) 168, 286
Eco88I CYCGRG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 643
FaeI CATG 1 cut(s) 601
FaiI YATR 3 cut(s) 71, 96, 599
FatI CATG 1 cut(s) 597
FauI CCCGC 3 cut(s) 252, 461, 479
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 417, 478
FokI GGATG 5 cut(s) 530, 560, 566, 593, 622
Fsp4HI GCNGC 2 cut(s) 417, 478
GlaI GCGC 2 cut(s) 153, 214
GluI GCNGC 2 cut(s) 417, 478
GsuI CTGGAG 2 cut(s) 404, 452
HaeIII GGCC 3 cut(s) 35, 275, 632
HapII CCGG 5 cut(s) 24, 107, 191, 276, 443
HgaI GACGC 2 cut(s) 211, 660
HhaI GCGC 2 cut(s) 154, 215
Hin1II CATG 1 cut(s) 601
Hin6I GCGC 2 cut(s) 152, 213
HinP1I GCGC 2 cut(s) 152, 213
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 60, 643
HinfI GANTC 6 cut(s) 55, 89, 110, 138, 185, 458
HpaII CCGG 5 cut(s) 24, 107, 191, 276, 443
HphI GGTGA 3 cut(s) 229, 241, 533
Hpy166II GTNNAC 2 cut(s) 12, 451
Hpy188I TCNGA 2 cut(s) 179, 463
Hpy188III TCNNGA 3 cut(s) 157, 199, 337
Hpy8I GTNNAC 2 cut(s) 12, 451
Hpy99I CGWCG 3 cut(s) 16, 167, 284
HpyAV CCTTC 4 cut(s) 220, 229, 310, 319
HpyCH4III ACNGT 2 cut(s) 75, 500
HpyCH4IV ACGT 2 cut(s) 345, 525
HpyCH4V TGCA 2 cut(s) 372, 480
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 272, 474, 483, 651
HpyF3I CTNAG 1 cut(s) 627
HpySE526I ACGT 2 cut(s) 345, 525
Hsp92II CATG 1 cut(s) 601
HspAI GCGC 2 cut(s) 152, 213
KroI GCCGGC 2 cut(s) 190, 275
KroNI GCCGGC 2 cut(s) 192, 277
Kzo9I GATC 3 cut(s) 159, 174, 438
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 1 cut(s) 464
MaeII ACGT 2 cut(s) 345, 525
MaeIII GTNAC 4 cut(s) 102, 199, 409, 521
MalI GATC 3 cut(s) 161, 176, 440
MboI GATC 3 cut(s) 159, 174, 438
MboII GAAGA 3 cut(s) 51, 58, 122
MflI RGATCY 2 cut(s) 174, 438
MluCI AATT 1 cut(s) 362
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 202, 519
MroNI GCCGGC 2 cut(s) 190, 275
MspI CCGG 5 cut(s) 24, 107, 191, 276, 443
MspR9I CCNGG 3 cut(s) 24, 431, 443
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 4 cut(s) 152, 213, 215, 259
MwoI GCNNNNNNNGC 5 cut(s) 221, 272, 474, 483, 651
NaeI GCCGGC 2 cut(s) 192, 277
NciI CCSGG 2 cut(s) 24, 443
NdeII GATC 3 cut(s) 159, 174, 438
NgoMIV GCCGGC 2 cut(s) 190, 275
NlaIII CATG 1 cut(s) 601
NlaIV GGNNCC 3 cut(s) 148, 169, 287
NmuCI GTSAC 3 cut(s) 199, 409, 521
PaeR7I CTCGAG 1 cut(s) 155
PceI AGGCCT 1 cut(s) 632
PctI GAATGC 1 cut(s) 226
PdiI GCCGGC 2 cut(s) 192, 277
PfeI GAWTC 5 cut(s) 55, 89, 110, 138, 458
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 2 cut(s) 418, 479
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 3 cut(s) 148, 169, 287
PspPI GGNCC 4 cut(s) 33, 168, 273, 286
PsuI RGATCY 2 cut(s) 174, 438
PsyI GACNNNGTC 1 cut(s) 284
SalI GTCGAC 1 cut(s) 10
SatI GCNGC 2 cut(s) 417, 478
Sau3AI GATC 3 cut(s) 159, 174, 438
Sau96I GGNCC 4 cut(s) 33, 168, 273, 286
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 3 cut(s) 24, 431, 443
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 2 cut(s) 168, 286
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 155, 646
SmoI CTYRAG 2 cut(s) 155, 646
Sse9I AATT 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 632
SsiI CCGC 9 cut(s) 150, 211, 215, 259, 266, 416, 419, 468, 486
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 3 cut(s) 22, 429, 441
TaaI ACNGT 2 cut(s) 75, 500
TaiI ACGT 2 cut(s) 348, 528
TaqI TCGA 4 cut(s) 11, 156, 162, 294
TasI AATT 1 cut(s) 362
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 5 cut(s) 55, 89, 110, 138, 458
TseFI GTSAC 3 cut(s) 199, 409, 521
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 3 cut(s) 199, 409, 521
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 168, 286
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.