RchiOBHm_Chr7g0186241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011286
Physical Location & Seq
Forward (+)
6255783 .. 6256573
791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16624

Sequence Viewer

Length: 750 bp
ATGTGTAGGTCGACGGAGTACCCTGGCTTTCGGGCCAGAAGAGAAGCCCTAAAGATTCAAGCTTTCTTCATACGGTTTTCGGGTTTGGATTCTCATAAGCCGTTACCGGAATCGCTCACGCTTTCGTATCTTCCAAGAATCAACGGCACCGCGCTCGAGATCGACGGGTCAAAGATTCGACCCGACGCGCCGGCGTTCGTGACGCTTCACCGCTCGGTGAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCGGTTCGGGCCGGCGACGGGGTCCAGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGTTGAAGGGGATTTTCAGGAAAGACGTGGGGCAGGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGGCGGAGGTCACGGCGGCGGAGGTGTGCGTGGCCGTGGAGGGACACGTGGCGATGAGCGAGAGGGTGGCGATGATTGTGAAAAGGCGGGGAAAGTGTGGGTTTCATCCGCTGGAGGAGATCCCGGAGGTGGACGAGGAATCGGACGGCCGGTGTTGCTGCACTTGCGGGGAAATGGACGGTGGAGATTTGGAGGAGGATGGTGACGTGGAGGAGGAGTTGGACATGGATGTGGATGTGGAGGGAGTGAGATGGGCTGTGGATGTGGGCTTTTGGGTCATGTGTTTGGGTGTGGGCTACTTGGTTTCTAAGGCCTCATCCAAAAGCTTAAGACGCAGGAGATTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.71

Weight (kDa)

5.27

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 11
AccII CGCG 3 cut(s) 152, 188, 259
AclWI GGATC 1 cut(s) 514
AcoI YGGCCR 2 cut(s) 432, 547
AcvI CACGTG 1 cut(s) 448
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 3 cut(s) 282, 295, 529
AflII CTTAAG 1 cut(s) 727
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 2 cut(s) 59, 325
AjiI CACGTC 2 cut(s) 346, 607
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 62, 726
AluI AGCT 2 cut(s) 62, 726
AlwI GGATC 1 cut(s) 514
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 5 cut(s) 33, 273, 432, 547, 711
ApeKI GCWGC 1 cut(s) 558
AspLEI GCGC 2 cut(s) 154, 190
AspS9I GGNCC 3 cut(s) 33, 273, 286
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 4 cut(s) 200, 229, 241, 614
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 448
BbvI GCAGC 1 cut(s) 545
BccI CCATC 2 cut(s) 593, 645
BceAI ACGGC 5 cut(s) 85, 160, 419, 429, 562
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 1 cut(s) 524
BfrI CTTAAG 1 cut(s) 727
BisI GCNGC 2 cut(s) 417, 559
BlsI GCNGC 2 cut(s) 418, 560
Bme1390I CCNGG 2 cut(s) 24, 524
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 2 cut(s) 346, 607
BmgT120I GGNCC 3 cut(s) 33, 273, 286
BmiI GGNNCC 2 cut(s) 148, 287
BmrFI CCNGG 2 cut(s) 24, 524
BpmI CTGGAG 2 cut(s) 404, 533
BpuMI CCSGG 1 cut(s) 524
BsaAI YACGTR 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 22, 435
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 6 cut(s) 305, 335, 359, 389, 602, 632
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 295, 529
Bse118I RCCGGY 3 cut(s) 190, 275, 549
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 22, 435
BseGI GGATG 6 cut(s) 505, 604, 634, 640, 667, 716
BseLI CCNNNNNNNGG 3 cut(s) 282, 295, 529
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 5 cut(s) 326, 530, 608, 626, 629
BseX3I CGGCCG 1 cut(s) 547
BseXI GCAGC 1 cut(s) 545
BsgI GTGCAG 1 cut(s) 544
Bsh1236I CGCG 3 cut(s) 152, 188, 259
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 5 cut(s) 35, 275, 434, 549, 713
BshNI GGYRCC 1 cut(s) 146
BsiEI CGRYCG 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 5 cut(s) 107, 191, 276, 524, 550
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 282, 295, 529
BsmFI GGGAC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 5 cut(s) 35, 275, 434, 549, 713
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 2 cut(s) 159, 519
BspANI GGCC 5 cut(s) 35, 275, 434, 549, 713
BspFNI CGCG 3 cut(s) 152, 188, 259
BspLI GGNNCC 2 cut(s) 148, 287
BspPI GGATC 1 cut(s) 514
BspT107I GGYRCC 1 cut(s) 146
BspTI CTTAAG 1 cut(s) 727
BsrBI CCGCTC 1 cut(s) 213
BsrFI RCCGGY 3 cut(s) 190, 275, 549
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 3 cut(s) 190, 275, 549
BssECI CCNNGG 2 cut(s) 22, 435
BssMI GATC 2 cut(s) 159, 519
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 75, 581
Bst6I CTCTTC 1 cut(s) 34
BstAFI CTTAAG 1 cut(s) 727
BstBAI YACGTR 1 cut(s) 448
BstC8I GCNNGC 3 cut(s) 192, 277, 380
BstDEI CTNAG 1 cut(s) 708
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 6 cut(s) 505, 604, 634, 640, 667, 716
BstFNI CGCG 3 cut(s) 152, 188, 259
BstHHI GCGC 2 cut(s) 154, 190
BstKTI GATC 2 cut(s) 162, 522
BstMBI GATC 2 cut(s) 159, 519
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 4 cut(s) 272, 555, 564, 732
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 22, 522
BstUI CGCG 3 cut(s) 152, 188, 259
BstV1I GCAGC 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BstZI CGGCCG 1 cut(s) 547
BsuRI GGCC 5 cut(s) 35, 275, 434, 549, 713
BtgI CCRYGG 1 cut(s) 435
BtgZI GCGATG 2 cut(s) 467, 485
BtrI CACGTC 2 cut(s) 346, 607
BtsCI GGATG 6 cut(s) 505, 604, 634, 640, 667, 716
Cac8I GCNNGC 3 cut(s) 192, 277, 380
CfoI GCGC 2 cut(s) 154, 190
Cfr10I RCCGGY 3 cut(s) 190, 275, 549
Cfr13I GGNCC 3 cut(s) 33, 273, 286
CseI GACGC 3 cut(s) 194, 211, 741
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 625, 679
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 708
DpnI GATC 2 cut(s) 161, 521
DpnII GATC 2 cut(s) 159, 519
EaeI YGGCCR 2 cut(s) 432, 547
EagI CGGCCG 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 2 cut(s) 419, 434
EclXI CGGCCG 1 cut(s) 547
Eco147I AGGCCT 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 547
Eco72I CACGTG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 2 cut(s) 628, 682
FaiI YATR 4 cut(s) 71, 96, 626, 680
FaqI GGGAC 1 cut(s) 456
FatI CATG 2 cut(s) 624, 678
FauI CCCGC 3 cut(s) 252, 480, 560
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 417, 559
FokI GGATG 6 cut(s) 492, 611, 641, 647, 674, 703
Fsp4HI GCNGC 2 cut(s) 417, 559
GlaI GCGC 2 cut(s) 153, 189
GluI GCNGC 2 cut(s) 417, 559
GsuI CTGGAG 2 cut(s) 404, 533
HaeIII GGCC 5 cut(s) 35, 275, 434, 549, 713
HapII CCGG 5 cut(s) 107, 191, 276, 524, 550
HgaI GACGC 3 cut(s) 194, 211, 741
HhaI GCGC 2 cut(s) 154, 190
Hin1II CATG 2 cut(s) 628, 682
Hin6I GCGC 2 cut(s) 152, 188
HinP1I GCGC 2 cut(s) 152, 188
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 60, 724
HinfI GANTC 6 cut(s) 55, 89, 110, 138, 175, 539
HpaII CCGG 5 cut(s) 107, 191, 276, 524, 550
HphI GGTGA 4 cut(s) 200, 229, 241, 614
Hpy166II GTNNAC 2 cut(s) 12, 532
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 3 cut(s) 157, 199, 337
Hpy8I GTNNAC 2 cut(s) 12, 532
Hpy99I CGWCG 4 cut(s) 16, 167, 188, 284
HpyAV CCTTC 4 cut(s) 220, 229, 310, 319
HpyCH4III ACNGT 2 cut(s) 75, 581
HpyCH4IV ACGT 3 cut(s) 345, 447, 606
HpyCH4V TGCA 2 cut(s) 372, 561
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 555, 564, 732
HpyF3I CTNAG 1 cut(s) 708
HpySE526I ACGT 3 cut(s) 345, 447, 606
Hsp92II CATG 2 cut(s) 628, 682
HspAI GCGC 2 cut(s) 152, 188
KroI GCCGGC 2 cut(s) 190, 275
KroNI GCCGGC 2 cut(s) 192, 277
Kzo9I GATC 2 cut(s) 159, 519
Lsp1109I GCAGC 1 cut(s) 545
MaeII ACGT 3 cut(s) 345, 447, 606
MaeIII GTNAC 4 cut(s) 102, 199, 409, 602
MalI GATC 2 cut(s) 161, 521
MbiI CCGCTC 1 cut(s) 213
MboI GATC 2 cut(s) 159, 519
MboII GAAGA 3 cut(s) 51, 58, 122
MflI RGATCY 1 cut(s) 519
MluCI AATT 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 600
MreI CGCCGGCG 1 cut(s) 190
MroNI GCCGGC 2 cut(s) 190, 275
MseI TTAA 1 cut(s) 728
MslI CAYNNNNRTG 1 cut(s) 629
MspA1I CMGCKG 1 cut(s) 511
MspCI CTTAAG 1 cut(s) 727
MspI CCGG 5 cut(s) 107, 191, 276, 524, 550
MspR9I CCNGG 2 cut(s) 24, 524
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 3 cut(s) 152, 188, 259
MwoI GCNNNNNNNGC 4 cut(s) 272, 555, 564, 732
NaeI GCCGGC 2 cut(s) 192, 277
NciI CCSGG 1 cut(s) 524
NdeII GATC 2 cut(s) 159, 519
NgoMIV GCCGGC 2 cut(s) 190, 275
NlaIII CATG 2 cut(s) 628, 682
NlaIV GGNNCC 2 cut(s) 148, 287
NmuCI GTSAC 3 cut(s) 199, 409, 602
PaeR7I CTCGAG 1 cut(s) 155
PceI AGGCCT 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PctI GAATGC 1 cut(s) 226
PdiI GCCGGC 2 cut(s) 192, 277
PfeI GAWTC 6 cut(s) 55, 89, 110, 138, 175, 539
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 2 cut(s) 418, 560
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
Ppu21I YACGTR 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 22
PspCI CACGTG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 148, 287
PspPI GGNCC 3 cut(s) 33, 273, 286
PsuI RGATCY 1 cut(s) 519
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 629
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 728
SatI GCNGC 2 cut(s) 417, 559
Sau3AI GATC 2 cut(s) 159, 519
Sau96I GGNCC 3 cut(s) 33, 273, 286
ScrFI CCNGG 2 cut(s) 24, 524
Sfr274I CTCGAG 1 cut(s) 155
SgrAI CRCCGGYG 1 cut(s) 190
SinI GGWCC 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 2 cut(s) 155, 727
SmoI CTYRAG 2 cut(s) 155, 727
Sse9I AATT 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 713
StuI AGGCCT 1 cut(s) 713
StyD4I CCNGG 2 cut(s) 22, 522
TaaI ACNGT 2 cut(s) 75, 581
TaiI ACGT 3 cut(s) 348, 450, 609
TaqI TCGA 5 cut(s) 11, 156, 162, 178, 294
TasI AATT 1 cut(s) 362
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 6 cut(s) 55, 89, 110, 138, 175, 539
Tru1I TTAA 1 cut(s) 728
Tru9I TTAA 1 cut(s) 728
TseFI GTSAC 3 cut(s) 199, 409, 602
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 3 cut(s) 199, 409, 602
TspDTI ATGAA 2 cut(s) 58, 494
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.