Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011286

Physical Location & Seq

Genomic Coordinates Forward (+)

5790336 .. 5793792

Gene Structure 3457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG079800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTGTAGGTCGACGGACTACCCTGGCTTTCAGGCCAGGAGAGAAGCCCTAAAGATTCAAGCTTTCTTTATACGGTTTTCGGGTTTGGATTTTCGTAAGCCGTTACCGGAATCGCTCACTCTTTCGTATCTTCCGAGGATCAACGGCACCGCGCTCGAGATCGACGGGTCAAAGATCCGACCCGACTCGCCGGCGTTCGTGACGCTTCACCGCTCGGTTAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCGGTTCGGGCCGGCGACGGGGTCCGGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGCTGAAGGGGATTTTCAGGAAAGATGAGGGGCAGGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGGAGGAGTTAAATGTCAACTTAGAAACGAACAATGTTCGTCATATAGAAAACAACACAGAAACGACCAATCCTGATAACGCCCACAATGAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.74

Weight (kDa)

6.34

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24110
fragaria_vesca	FvH4_5g10980
malus_domestica	MD06G1117900.v1.1 MD14G1125500.v1.1
prunus_persica	Prupe.5G129000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186241 RchiOBHm_Chr7g0186841
rosa_laevigata	RLG00000004811
rosa_multiflora	Rmu_sc0002609.1_g000002 Rmu_sc0012555.1_g000001 Rmu_ssc0000024.1_g000039
rosa_roxburghii	Rroxscaffold_3G00267780
rosa_rugosa	Rorug06G0472900 Rorug06G0477400
rosa_samantha	Rh7BG079800 Rh7CG079800 Rh7DG080300 Rh7DG085000
rosa_wichuraiana	Rw7G006680 Rw7G007300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	2 cut(s)	152, 259
AciI	CCGC	4 cut(s)	150, 211, 259, 266
AclWI	GGATC	2 cut(s)	146, 169
AcuI	CTGAAG	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	282, 295
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	2 cut(s)	22, 35
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AlwI	GGATC	2 cut(s)	146, 169
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	33, 273
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	273, 286
AsuHPI	GGTGA	2 cut(s)	200, 241
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	146
BceAI	ACGGC	2 cut(s)	85, 160
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	24, 37
Bme1390I	CCNGG	2 cut(s)	24, 37
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	273, 286
BmiI	GGNNCC	2 cut(s)	148, 287
BmrFI	CCNGG	2 cut(s)	24, 37
BpmI	CTGGAG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	22, 134
BsaWI	WCCGGW	2 cut(s)	106, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 295
Bse118I	RCCGGY	2 cut(s)	190, 275
BseBI	CCWGG	2 cut(s)	24, 37
BseDI	CCNNGG	2 cut(s)	22, 134
BseLI	CCNNNNNNNGG	2 cut(s)	282, 295
BseRI	GAGGAG	2 cut(s)	326, 419
Bsh1236I	CGCG	2 cut(s)	152, 259
BshFI	GGCC	2 cut(s)	35, 275
BshNI	GGYRCC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	4 cut(s)	107, 191, 276, 289
BslI	CCNNNNNNNGG	2 cut(s)	282, 295
BsnI	GGCC	2 cut(s)	35, 275
BsoBI	CYCGRG	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	138, 159, 174
BspACI	CCGC	4 cut(s)	150, 211, 259, 266
BspANI	GGCC	2 cut(s)	35, 275
BspFNI	CGCG	2 cut(s)	152, 259
BspLI	GGNNCC	2 cut(s)	148, 287
BspPI	GGATC	2 cut(s)	146, 169
BspT107I	GGYRCC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	213
BsrFI	RCCGGY	2 cut(s)	190, 275
BssAI	RCCGGY	2 cut(s)	190, 275
BssECI	CCNNGG	2 cut(s)	22, 134
BssMI	GATC	3 cut(s)	138, 159, 174
Bst2UI	CCWGG	2 cut(s)	24, 37
Bst4CI	ACNGT	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	192, 277, 380
BstDEI	CTNAG	1 cut(s)	421
BstFNI	CGCG	2 cut(s)	152, 259
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	141, 162, 177
BstMBI	GATC	3 cut(s)	138, 159, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	24, 37
BstSCI	CCNGG	2 cut(s)	22, 35
BstUI	CGCG	2 cut(s)	152, 259
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	35, 275
Cac8I	GCNNGC	3 cut(s)	192, 277, 380
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	2 cut(s)	190, 275
Cfr13I	GGNCC	2 cut(s)	273, 286
CseI	GACGC	1 cut(s)	211
CviJI	RGCY	6 cut(s)	27, 35, 47, 62, 100, 275
CviKI_1	RGCY	6 cut(s)	27, 35, 47, 62, 100, 275
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	3 cut(s)	140, 161, 176
DpnII	GATC	3 cut(s)	138, 159, 174
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	22, 35
FaiI	YATR	3 cut(s)	71, 444, 446
FauI	CCCGC	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	11
GlaI	GCGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	35, 275
HapII	CCGG	4 cut(s)	107, 191, 276, 289
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	2 cut(s)	12, 418
HindII	GTYRAC	2 cut(s)	12, 418
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	3 cut(s)	55, 110, 185
HpaII	CCGG	4 cut(s)	107, 191, 276, 289
HphI	GGTGA	2 cut(s)	200, 241
Hpy166II	GTNNAC	2 cut(s)	12, 418
Hpy188I	TCNGA	2 cut(s)	135, 179
Hpy188III	TCNNGA	4 cut(s)	157, 199, 337, 473
Hpy8I	GTNNAC	2 cut(s)	12, 418
Hpy99I	CGWCG	3 cut(s)	16, 167, 284
HpyAV	CCTTC	4 cut(s)	220, 229, 310, 319
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	421
HspAI	GCGC	1 cut(s)	152
KroI	GCCGGC	2 cut(s)	190, 275
KroNI	GCCGGC	2 cut(s)	192, 277
Kzo9I	GATC	3 cut(s)	138, 159, 174
MaeIII	GTNAC	2 cut(s)	102, 199
MalI	GATC	3 cut(s)	140, 161, 176
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	3 cut(s)	138, 159, 174
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	9 cut(s)	129, 225, 235, 256, 289, 300, 304, 340, 397
MreI	CGCCGGCG	1 cut(s)	190
MroNI	GCCGGC	2 cut(s)	190, 275
MseI	TTAA	2 cut(s)	219, 410
MspI	CCGG	4 cut(s)	107, 191, 276, 289
MspR9I	CCNGG	2 cut(s)	24, 37
MvaI	CCWGG	2 cut(s)	24, 37
MvnI	CGCG	2 cut(s)	152, 259
MwoI	GCNNNNNNNGC	1 cut(s)	272
NaeI	GCCGGC	2 cut(s)	192, 277
NdeII	GATC	3 cut(s)	138, 159, 174
NgoMIV	GCCGGC	2 cut(s)	190, 275
NlaIV	GGNNCC	2 cut(s)	148, 287
NmuCI	GTSAC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 221
PdiI	GCCGGC	2 cut(s)	192, 277
PfeI	GAWTC	2 cut(s)	55, 110
PflFI	GACNNNGTC	1 cut(s)	284
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	22, 35
PspGI	CCWGG	2 cut(s)	22, 35
PspN4I	GGNNCC	2 cut(s)	148, 287
PspPI	GGNCC	2 cut(s)	273, 286
PsuI	RGATCY	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	284
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	219, 410
Sau3AI	GATC	3 cut(s)	138, 159, 174
Sau96I	GGNCC	2 cut(s)	273, 286
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	24, 37
SetI	ASST	4 cut(s)	11, 64, 231, 321
Sfr274I	CTCGAG	1 cut(s)	155
SgrAI	CRCCGGYG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	4 cut(s)	150, 211, 259, 266
StyD4I	CCNGG	2 cut(s)	22, 35
TaaI	ACNGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	11, 156, 162, 294
TasI	AATT	1 cut(s)	362
TfiI	GAWTC	2 cut(s)	55, 110
Tru1I	TTAA	2 cut(s)	219, 410
Tru9I	TTAA	2 cut(s)	219, 410
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.