RLG00000004811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011286
Physical Location & Seq
Forward (+)
62755528 .. 62757921
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004811

Sequence Viewer

Length: 921 bp
ATGTGTAGGTCGACGGACTACCCTGGCTTTCAGGCCAGGAGAGAAGCCCTAAAGATTCAAGCATTCTTTATACGGTTTTCGGGTTTGGATTCTCATAAGCCGCTACCGGAATCGCTCACTCTTTCGTATCTTCCAAGAATCAACGGCACGGCGCTCGAGATCGACGGGTCCAAGATCCGACCCGACTCGCCGGCTTTCGTGACGCTCCACCGCGCGGTGAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCGGTTCGGGCTGGCGACGGGGTCCAGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGTTGAAGGGGATTTTCAGGAAAGATGAGGGGCAGGTGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGGAGGAGGTCACGGCGGCGGAGGTGTGCGTGGCCGTGGAGGGACACGTGGCGATGAGCGAGAGGGTGGCGATGATTGTGAAAAGGCGGGGAAAGTGTGGGTTTCATCCGCTGGAGGAGATTCCGGAGGTGGACGAGCAATCGGACGGCGGGTGTTGCTGCACTTGCGGGGAAATGGACGGTGGAGATTTGGAGGAGGTTGGTGACGTGGAGGAGGTTGAGGAGGAGTTGGAGATGGATGTGGAGGGATTGGAAACTTGGAATTGGACTGATATAGCTTTGAAGCCCATTCCTCCCAATCTCCTAGGGCTAAGAGTACTGTGTGATGTTCTCTGTGATGGGGATTGGCTTAAATTAAAAGTTTACAGCAGTTTGCATAAAGATTCTATGTGCTGGAGAAGCCCTTCCAATGATAGGGGTGAGTGGATGAATGGGGTCTCTGCCAAGTTGGGTATTAGTCAAGTTGTTGAAGCTGAATTTTGGAGGCTCTTTAAAGGGTATAGAAATGGCTTCTATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.28

Weight (kDa)

4.92

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 11
AccII CGCG 3 cut(s) 213, 215, 259
AccIII TCCGGA 1 cut(s) 523
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 875
AcvI CACGTG 1 cut(s) 448
AfaI GTAC 1 cut(s) 717
AfiI CCNNNNNNNGG 3 cut(s) 214, 295, 813
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 4 cut(s) 59, 325, 682, 869
AjiI CACGTC 1 cut(s) 607
AjnI CCWGG 2 cut(s) 22, 35
AluBI AGCT 2 cut(s) 677, 872
AluI AGCT 2 cut(s) 677, 872
Alw26I GTCTC 1 cut(s) 841
AlwI GGATC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 2 cut(s) 33, 432
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 1 cut(s) 875
Asp700I GAANNNNTTC 1 cut(s) 802
AspA2I CCTAGG 1 cut(s) 703
AspLEI GCGC 2 cut(s) 154, 215
AspS9I GGNCC 2 cut(s) 168, 286
AsuHPI GGTGA 4 cut(s) 229, 241, 614, 830
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 2 cut(s) 168, 286
AvrII CCTAGG 1 cut(s) 703
BbrPI CACGTG 1 cut(s) 448
BbvI GCAGC 1 cut(s) 545
BccI CCATC 2 cut(s) 628, 731
BceAI ACGGC 5 cut(s) 160, 165, 419, 429, 562
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 2 cut(s) 24, 37
BcoDI GTCTC 1 cut(s) 841
BfaI CTAG 1 cut(s) 704
BfoI RGCGCY 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 3 cut(s) 101, 417, 559
BlnI CCTAGG 1 cut(s) 703
BlsI GCNGC 3 cut(s) 102, 418, 560
BmcAI AGTACT 1 cut(s) 717
Bme1390I CCNGG 2 cut(s) 24, 37
Bme18I GGWCC 2 cut(s) 168, 286
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 607
BmgT120I GGNCC 2 cut(s) 168, 286
BmiI GGNNCC 2 cut(s) 169, 287
BmrFI CCNGG 2 cut(s) 24, 37
BpmI CTGGAG 3 cut(s) 404, 533, 814
BsaAI YACGTR 1 cut(s) 448
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 3 cut(s) 22, 435, 703
BsaWI WCCGGW 2 cut(s) 106, 523
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 295, 813
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 523
BseBI CCWGG 2 cut(s) 24, 37
BseDI CCNNGG 3 cut(s) 22, 435, 703
BseGI GGATG 3 cut(s) 505, 643, 831
BseLI CCNNNNNNNGG 3 cut(s) 214, 295, 813
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 7 cut(s) 326, 419, 530, 608, 626, 635, 638
BseXI GCAGC 1 cut(s) 545
BsgI GTGCAG 1 cut(s) 544
Bsh1236I CGCG 3 cut(s) 213, 215, 259
BshFI GGCC 2 cut(s) 35, 434
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 3 cut(s) 107, 191, 524
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 214, 295, 813
BsmAI GTCTC 1 cut(s) 841
BsmFI GGGAC 1 cut(s) 456
BsmI GAATGC 2 cut(s) 62, 226
BsnI GGCC 2 cut(s) 35, 434
Bso31I GGTCTC 1 cut(s) 841
BsoBI CYCGRG 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 2 cut(s) 159, 174
BspANI GGCC 2 cut(s) 35, 434
BspEI TCCGGA 1 cut(s) 523
BspFNI CGCG 3 cut(s) 213, 215, 259
BspLI GGNNCC 2 cut(s) 169, 287
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 841
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 3 cut(s) 22, 435, 703
BssMI GATC 2 cut(s) 159, 174
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 2 cut(s) 24, 37
Bst4CI ACNGT 3 cut(s) 75, 581, 720
BstBAI YACGTR 1 cut(s) 448
BstC8I GCNNGC 3 cut(s) 192, 277, 380
BstDEI CTNAG 1 cut(s) 710
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 3 cut(s) 505, 643, 831
BstFNI CGCG 3 cut(s) 213, 215, 259
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 2 cut(s) 154, 215
BstKTI GATC 2 cut(s) 162, 177
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 2 cut(s) 159, 174
BstMWI GCNNNNNNNGC 5 cut(s) 221, 272, 555, 564, 798
BstNI CCWGG 2 cut(s) 24, 37
BstSCI CCNGG 2 cut(s) 22, 35
BstUI CGCG 3 cut(s) 213, 215, 259
BstV1I GCAGC 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 2 cut(s) 35, 434
BtgI CCRYGG 1 cut(s) 435
BtgZI GCGATG 2 cut(s) 467, 485
BtrI CACGTC 1 cut(s) 607
BtsCI GGATG 3 cut(s) 505, 643, 831
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 192, 277, 380
CfoI GCGC 2 cut(s) 154, 215
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 168, 286
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 716
CviQI GTAC 1 cut(s) 716
DdeI CTNAG 1 cut(s) 710
DpnI GATC 2 cut(s) 161, 176
DpnII GATC 2 cut(s) 159, 174
DraI TTTAAA 1 cut(s) 892
EaeI YGGCCR 1 cut(s) 432
EciI GGCGGA 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 703
Eco31I GGTCTC 1 cut(s) 841
Eco47I GGWCC 2 cut(s) 168, 286
Eco72I CACGTG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 22, 35
EcoT14I CCWWGG 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 703
FaiI YATR 7 cut(s) 71, 96, 674, 777, 788, 900, 915
FaqI GGGAC 1 cut(s) 456
FauI CCCGC 4 cut(s) 252, 480, 542, 560
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 101, 417, 559
FokI GGATG 3 cut(s) 492, 650, 838
Fsp4HI GCNGC 3 cut(s) 101, 417, 559
FspBI CTAG 1 cut(s) 704
GlaI GCGC 2 cut(s) 153, 214
GluI GCNGC 3 cut(s) 101, 417, 559
GsuI CTGGAG 3 cut(s) 404, 533, 814
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 2 cut(s) 35, 434
HapII CCGG 3 cut(s) 107, 191, 524
HgaI GACGC 1 cut(s) 211
HhaI GCGC 2 cut(s) 154, 215
Hin6I GCGC 2 cut(s) 152, 213
HinP1I GCGC 2 cut(s) 152, 213
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 7 cut(s) 55, 89, 110, 138, 185, 520, 782
HpaII CCGG 3 cut(s) 107, 191, 524
HphI GGTGA 4 cut(s) 229, 241, 614, 830
Hpy166II GTNNAC 3 cut(s) 12, 532, 763
Hpy188I TCNGA 2 cut(s) 179, 544
Hpy188III TCNNGA 4 cut(s) 157, 199, 337, 524
Hpy8I GTNNAC 3 cut(s) 12, 532, 763
Hpy99I CGWCG 3 cut(s) 16, 167, 284
HpyAV CCTTC 5 cut(s) 220, 229, 310, 319, 813
HpyCH4III ACNGT 3 cut(s) 75, 581, 720
HpyCH4IV ACGT 2 cut(s) 447, 606
HpyCH4V TGCA 3 cut(s) 372, 561, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 272, 555, 564, 798
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 2 cut(s) 447, 606
HspAI GCGC 2 cut(s) 152, 213
Kpn2I TCCGGA 1 cut(s) 523
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
Kzo9I GATC 2 cut(s) 159, 174
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 1 cut(s) 545
MaeI CTAG 1 cut(s) 704
MaeII ACGT 2 cut(s) 447, 606
MaeIII GTNAC 3 cut(s) 199, 409, 602
MalI GATC 2 cut(s) 161, 176
MboI GATC 2 cut(s) 159, 174
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 174
MluCI AATT 4 cut(s) 362, 661, 752, 875
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 202, 609
MroI TCCGGA 1 cut(s) 523
MroNI GCCGGC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 802
MseI TTAA 3 cut(s) 750, 755, 891
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 3 cut(s) 107, 191, 524
MspR9I CCNGG 2 cut(s) 24, 37
Mva1269I GAATGC 2 cut(s) 62, 226
MvaI CCWGG 2 cut(s) 24, 37
MvnI CGCG 3 cut(s) 213, 215, 259
MwoI GCNNNNNNNGC 5 cut(s) 221, 272, 555, 564, 798
NaeI GCCGGC 1 cut(s) 192
NdeII GATC 2 cut(s) 159, 174
NgoMIV GCCGGC 1 cut(s) 190
NlaIV GGNNCC 2 cut(s) 169, 287
NmuCI GTSAC 3 cut(s) 199, 409, 602
PaeR7I CTCGAG 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 343
PctI GAATGC 2 cut(s) 62, 226
PdiI GCCGGC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 802
PfeI GAWTC 6 cut(s) 55, 89, 110, 138, 520, 782
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 3 cut(s) 102, 418, 560
PleI GAGTC 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
PpsI GAGTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 448
Psp6I CCWGG 2 cut(s) 22, 35
PspCI CACGTG 1 cut(s) 448
PspGI CCWGG 2 cut(s) 22, 35
PspN4I GGNNCC 2 cut(s) 169, 287
PspPI GGNCC 2 cut(s) 168, 286
PsuI RGATCY 1 cut(s) 174
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 717
RsaNI GTAC 1 cut(s) 716
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 750, 755, 891
SatI GCNGC 3 cut(s) 101, 417, 559
Sau3AI GATC 2 cut(s) 159, 174
Sau96I GGNCC 2 cut(s) 168, 286
ScaI AGTACT 1 cut(s) 717
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 24, 37
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 2 cut(s) 168, 286
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 4 cut(s) 362, 661, 752, 875
SspMI CTAG 1 cut(s) 704
StyD4I CCNGG 2 cut(s) 22, 35
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 3 cut(s) 75, 581, 720
TaiI ACGT 2 cut(s) 450, 609
TaqI TCGA 4 cut(s) 11, 156, 162, 294
TasI AATT 4 cut(s) 362, 661, 752, 875
TatI WGTACW 1 cut(s) 715
TauI GCSGC 2 cut(s) 103, 419
TfiI GAWTC 6 cut(s) 55, 89, 110, 138, 520, 782
Tru1I TTAA 3 cut(s) 750, 755, 891
Tru9I TTAA 3 cut(s) 750, 755, 891
TseFI GTSAC 3 cut(s) 199, 409, 602
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 3 cut(s) 199, 409, 602
TspDTI ATGAA 2 cut(s) 494, 842
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 168, 286
XapI RAATTY 1 cut(s) 875
XhoI CTCGAG 1 cut(s) 155
XmaJI CCTAGG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 802
XspI CTAG 1 cut(s) 704
ZrmI AGTACT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.