Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011286

Physical Location & Seq

Genomic Coordinates Reverse (-)

20052087 .. 20052863

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1125500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTGTAGATCGACGGACTTCCACGGATTTCAGTCGCGGAGAGACCGATTGAAGATTCGGGAATTTTTTCTTCGGTTTTCGGGTTTGATTACCCGGGAACCGTTACCCGAATCGCTCACGCTTATGTATCTTCCACGGATCAACGAGAACGAGCTTGAAATCGACGGGTCGAAGATCCGACCCGACTCACCGGCATTTGTGACGCTTTACCGGGTCGTGAGCGCGAAGGTGAGGGAGGGGGAGGTGGTGTTCGGGTCCCGGGAACGGGTCGGGGCTGGCGACGGAATCCGGTTCGAGGTGTATCTGAGGGAGGAGAAGGTGCTGAAGGGAATTTTCAGGAAGGACGAGCGGCAAGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGGGCGAGAGGGTGGCGGCGGAGGTCGCGGATGCTGAGGTCTGCGTGGCGGTGGAGGGACACGTGGCGATGAACGAGAGAGTGAAGATGGTGGTTAAAAAGACGAAAAAGCACCGGAAATGCGGGTTTAAGCGGCTGGAGGAGATTCCTGAGGAAGGAGCGGTGGATGATGAATATGATGAATCGGACGGCTGTTGTTGCAACTGTAGATCTGACGGTGGAGATTCGGAGATGGGGAGTGACGTGGAAGGTGACGATGAGGGGGAGTTGGAGATGGATATGGAAGGAGTGAGATGGGCCGTGGATGTGGGGATCTGGGTCGTGTGTTTGGGTGTGGGCTACTTTGTTTCTAAAGCCTCTTCCAAAAGCTTAAGACGCAGAAGATTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.4

Weight (kDa)

5.35

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24110
fragaria_vesca	FvH4_5g10980
malus_domestica	MD06G1117900.v1.1 MD14G1125500.v1.1
prunus_persica	Prupe.5G129000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186241 RchiOBHm_Chr7g0186841
rosa_laevigata	RLG00000004811
rosa_multiflora	Rmu_sc0002609.1_g000002 Rmu_sc0012555.1_g000001 Rmu_ssc0000024.1_g000039
rosa_roxburghii	Rroxscaffold_3G00267780
rosa_rugosa	Rorug06G0472900 Rorug06G0477400
rosa_samantha	Rh7BG079800 Rh7CG079800 Rh7DG080300 Rh7DG085000
rosa_wichuraiana	Rw7G006680 Rw7G007300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	349, 545
AccII	CGCG	3 cut(s)	37, 224, 413
AciI	CCGC	9 cut(s)	37, 349, 401, 404, 413, 434, 507, 517, 545
AclWI	GGATC	3 cut(s)	146, 169, 704
AcsI	RAATTY	2 cut(s)	62, 330
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	448
AfiI	CCNNNNNNNGG	4 cut(s)	264, 265, 295, 539
AflII	CTTAAG	1 cut(s)	754
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	52, 158
AjiI	CACGTC	1 cut(s)	628
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	2 cut(s)	154, 753
AluI	AGCT	2 cut(s)	154, 753
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	146, 169, 704
Ama87I	CYCGRG	2 cut(s)	93, 258
AoxI	GGCC	1 cut(s)	681
ApoI	RAATTY	2 cut(s)	62, 330
AseI	ATTAAT	1 cut(s)	770
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	255, 681
AsuC2I	CCSGG	5 cut(s)	94, 95, 212, 259, 260
AsuHPI	GGTGA	3 cut(s)	180, 241, 647
AvaI	CYCGRG	2 cut(s)	93, 258
AvaII	GGWCC	1 cut(s)	255
AxyI	CCTNAGG	1 cut(s)	534
BbrPI	CACGTG	1 cut(s)	448
BbvCI	CCTCAGC	1 cut(s)	420
BccI	CCATC	4 cut(s)	466, 610, 652, 672
BceAI	ACGGC	2 cut(s)	589, 668
BcnI	CCSGG	5 cut(s)	94, 95, 212, 259, 260
BcoDI	GTCTC	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	589
BfrI	CTTAAG	1 cut(s)	754
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	3 cut(s)	350, 402, 518
BlsI	GCNGC	3 cut(s)	351, 403, 519
Bme1390I	CCNGG	5 cut(s)	94, 95, 212, 259, 260
Bme18I	GGWCC	1 cut(s)	255
BmeT110I	CYCGRG	2 cut(s)	93, 258
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	255, 681
BmiI	GGNNCC	3 cut(s)	99, 256, 257
BmrFI	CCNGG	5 cut(s)	94, 95, 212, 259, 260
BmsI	GCATC	1 cut(s)	406
BpmI	CTGGAG	2 cut(s)	404, 542
Bpu10I	CCTNAGC	1 cut(s)	420
BpuMI	CCSGG	5 cut(s)	94, 95, 212, 259, 260
BsaAI	YACGTR	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	5 cut(s)	22, 93, 134, 258, 684
BsaWI	WCCGGW	2 cut(s)	288, 498
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 359, 389
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 265, 295, 539
Bse118I	RCCGGY	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	534
BseDI	CCNNGG	5 cut(s)	22, 93, 134, 258, 684
BseGI	GGATG	3 cut(s)	421, 556, 694
BseLI	CCNNNNNNNGG	4 cut(s)	264, 265, 295, 539
BseMII	CTCAG	3 cut(s)	296, 411, 525
BseRI	GAGGAG	2 cut(s)	326, 539
Bsh1236I	CGCG	3 cut(s)	37, 224, 413
BshFI	GGCC	1 cut(s)	683
BsiHKCI	CYCGRG	2 cut(s)	93, 258
BsiSI	CCGG	6 cut(s)	94, 191, 211, 259, 289, 499
BslFI	GGGAC	2 cut(s)	241, 456
BslI	CCNNNNNNNGG	4 cut(s)	264, 265, 295, 539
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	241, 456
BsnI	GGCC	1 cut(s)	683
Bso31I	GGTCTC	1 cut(s)	36
BsoBI	CYCGRG	2 cut(s)	93, 258
Bsp143I	GATC	5 cut(s)	8, 138, 174, 593, 696
BspACI	CCGC	9 cut(s)	37, 349, 401, 404, 413, 434, 507, 517, 545
BspANI	GGCC	1 cut(s)	683
BspCNI	CTCAG	3 cut(s)	297, 412, 526
BspFNI	CGCG	3 cut(s)	37, 224, 413
BspLI	GGNNCC	3 cut(s)	99, 256, 257
BspPI	GGATC	3 cut(s)	146, 169, 704
BspTI	CTTAAG	1 cut(s)	754
BspTNI	GGTCTC	1 cut(s)	36
BsrBI	CCGCTC	2 cut(s)	349, 545
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	5 cut(s)	22, 93, 134, 258, 684
BssMI	GATC	5 cut(s)	8, 138, 174, 593, 696
Bst4CI	ACNGT	3 cut(s)	102, 590, 602
Bst6I	CTCTTC	1 cut(s)	748
BstAFI	CTTAAG	1 cut(s)	754
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	277, 380
BstDEI	CTNAG	3 cut(s)	305, 420, 534
BstDSI	CCRYGG	3 cut(s)	22, 134, 684
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	3 cut(s)	421, 556, 694
BstFNI	CGCG	3 cut(s)	37, 224, 413
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	5 cut(s)	11, 141, 177, 596, 699
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	5 cut(s)	8, 138, 174, 593, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 582, 759
BstSCI	CCNGG	5 cut(s)	92, 93, 210, 257, 258
BstSFI	CTRYAG	1 cut(s)	589
BstUI	CGCG	3 cut(s)	37, 224, 413
BstX2I	RGATCY	3 cut(s)	174, 593, 696
BstYI	RGATCY	3 cut(s)	174, 593, 696
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	683
BtgI	CCRYGG	3 cut(s)	22, 134, 684
BtgZI	GCGATG	1 cut(s)	467
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	421, 556, 694
Cac8I	GCNNGC	2 cut(s)	277, 380
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	255, 681
Cfr9I	CCCGGG	2 cut(s)	93, 258
CseI	GACGC	2 cut(s)	211, 768
CviJI	RGCY	8 cut(s)	154, 275, 520, 576, 683, 723, 740, 753
CviKI_1	RGCY	8 cut(s)	154, 275, 520, 576, 683, 723, 740, 753
DdeI	CTNAG	3 cut(s)	305, 420, 534
DpnI	GATC	5 cut(s)	10, 140, 176, 595, 698
DpnII	GATC	5 cut(s)	8, 138, 174, 593, 696
Eam1104I	CTCTTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	748
EciI	GGCGGA	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	448
Eco81I	CCTNAGG	1 cut(s)	534
Eco88I	CYCGRG	2 cut(s)	93, 258
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	255
FaiI	YATR	3 cut(s)	125, 561, 665
FaqI	GGGAC	2 cut(s)	241, 456
FauI	CCCGC	1 cut(s)	500
Fnu4HI	GCNGC	3 cut(s)	350, 402, 518
FokI	GGATG	3 cut(s)	428, 563, 701
Fsp4HI	GCNGC	3 cut(s)	350, 402, 518
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	3 cut(s)	350, 402, 518
GsuI	CTGGAG	2 cut(s)	404, 542
HaeIII	GGCC	1 cut(s)	683
HapII	CCGG	6 cut(s)	94, 191, 211, 259, 289, 499
HgaI	GACGC	2 cut(s)	211, 768
HhaI	GCGC	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	751
HinfI	GANTC	7 cut(s)	55, 110, 185, 285, 529, 566, 608
HpaII	CCGG	6 cut(s)	94, 191, 211, 259, 289, 499
HphI	GGTGA	3 cut(s)	180, 241, 647
Hpy188I	TCNGA	5 cut(s)	179, 306, 571, 598, 613
Hpy188III	TCNNGA	4 cut(s)	59, 217, 337, 533
Hpy99I	CGWCG	3 cut(s)	16, 167, 284
HpyAV	CCTTC	7 cut(s)	220, 310, 319, 334, 533, 626, 662
HpyCH4III	ACNGT	3 cut(s)	102, 590, 602
HpyCH4IV	ACGT	2 cut(s)	447, 627
HpyCH4V	TGCA	2 cut(s)	372, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 582, 759
HpyF3I	CTNAG	3 cut(s)	305, 420, 534
HpySE526I	ACGT	2 cut(s)	447, 627
HspAI	GCGC	1 cut(s)	222
KflI	GGGWCCC	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	8, 138, 174, 593, 696
LmnI	GCTCC	1 cut(s)	542
LweI	GCATC	1 cut(s)	406
MaeII	ACGT	2 cut(s)	447, 627
MaeIII	GTNAC	4 cut(s)	102, 199, 623, 635
MalI	GATC	5 cut(s)	10, 140, 176, 595, 698
MbiI	CCGCTC	2 cut(s)	349, 545
MboI	GATC	5 cut(s)	8, 138, 174, 593, 696
MboII	GAAGA	7 cut(s)	62, 64, 122, 184, 481, 735, 777
MflI	RGATCY	3 cut(s)	174, 593, 696
MluCI	AATT	3 cut(s)	62, 330, 362
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	202, 633
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	4 cut(s)	480, 513, 755, 770
MslI	CAYNNNNRTG	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	754
MspI	CCGG	6 cut(s)	94, 191, 211, 259, 289, 499
MspR9I	CCNGG	5 cut(s)	94, 95, 212, 259, 260
MvnI	CGCG	3 cut(s)	37, 224, 413
MwoI	GCNNNNNNNGC	3 cut(s)	410, 582, 759
NciI	CCSGG	5 cut(s)	94, 95, 212, 259, 260
NdeII	GATC	5 cut(s)	8, 138, 174, 593, 696
NlaIV	GGNNCC	3 cut(s)	99, 256, 257
NmuCI	GTSAC	3 cut(s)	199, 623, 635
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	6 cut(s)	55, 110, 285, 529, 566, 608
PkrI	GCNGC	3 cut(s)	351, 403, 519
PleI	GAGTC	1 cut(s)	179
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	255
PspCI	CACGTG	1 cut(s)	448
PspN4I	GGNNCC	3 cut(s)	99, 256, 257
PspPI	GGNCC	2 cut(s)	255, 681
PspPPI	RGGWCCY	1 cut(s)	255
PsuI	RGATCY	3 cut(s)	174, 593, 696
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	4 cut(s)	480, 513, 755, 770
SatI	GCNGC	3 cut(s)	350, 402, 518
Sau3AI	GATC	5 cut(s)	8, 138, 174, 593, 696
Sau96I	GGNCC	2 cut(s)	255, 681
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	5 cut(s)	94, 95, 212, 259, 260
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	1 cut(s)	255
SmaI	CCCGGG	2 cut(s)	95, 260
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	754
SmoI	CTYRAG	1 cut(s)	754
Sse9I	AATT	3 cut(s)	62, 330, 362
SsiI	CCGC	9 cut(s)	37, 349, 401, 404, 413, 434, 507, 517, 545
StyD4I	CCNGG	5 cut(s)	92, 93, 210, 257, 258
TaaI	ACNGT	3 cut(s)	102, 590, 602
TaiI	ACGT	2 cut(s)	450, 630
TaqI	TCGA	4 cut(s)	11, 162, 170, 294
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	3 cut(s)	62, 330, 362
TauI	GCSGC	3 cut(s)	352, 404, 520
TfiI	GAWTC	6 cut(s)	55, 110, 285, 529, 566, 608
Tru1I	TTAA	4 cut(s)	480, 513, 755, 770
Tru9I	TTAA	4 cut(s)	480, 513, 755, 770
TseFI	GTSAC	3 cut(s)	199, 623, 635
Tsp45I	GTSAC	3 cut(s)	199, 623, 635
TspDTI	ATGAA	3 cut(s)	470, 570, 579
TspGWI	ACGGA	4 cut(s)	29, 39, 151, 297
TspMI	CCCGGG	2 cut(s)	93, 258
Vha464I	CTTAAG	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	255
VspI	ATTAAT	1 cut(s)	770
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	2 cut(s)	62, 330
XmaI	CCCGGG	2 cut(s)	93, 258
XmnI	GAANNNNTTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.