Rh7DG085000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011286
Physical Location & Seq
Reverse (-)
6784397 .. 6785517
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG085000.1

Sequence Viewer

Length: 696 bp
ATGTGTAGGTCGACGGAGTACCCTGGCTTTCAGGCCAGGAGAGAAGCCCTAAAGATTCAAGCTTTCTTTATACGGTTTTCGGGTTTGGATTCTCATAAGCCGTTACCGGAATCGCTCACGCTTTCGTATCTTCCAAGAATCAACGGCACCGCGCTCGAGATCGACGGGTCAAAGATCCGACCCGACGCGCCGGCGTTCGTGACGCTTCACCGCTCGGTGAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCGGTTCGGGCCGGCGACGGGGTCCAGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGTTGAAGGGGATTTTCAGGAAAGACGTGGGGCAGGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGAAGGAGAGGGTGGCGATGATTGTGAAAAGGCGGGGAAAGTGTGGGTTTCATCCGCTGGAGGAGATCCCGGAGGTGGACGAGGAATGGGACGGCGGGTGTTGCTGCACTTGCGGGGAAATGGACGGTGGAGATTTGGAGGAGGATGGTGACGTGGAGGAGGAGTTGGACATGGATGTGGATGTGGAGGGAGTGAGATGGGCTGTGGATGTGGGCTTTTGGGTCATGTGTTTGGGTGTGGGCTACTTGGTTTCTAAGGCCTCATCCAAAAGCTTGAGACGCAGGAGATTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.96

Weight (kDa)

5.36

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 11
AccII CGCG 3 cut(s) 152, 188, 259
AciI CCGC 8 cut(s) 150, 211, 259, 266, 433, 455, 495, 513
AclWI GGATC 2 cut(s) 169, 460
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 3 cut(s) 282, 295, 475
AgsI TTSAA 2 cut(s) 59, 325
AjiI CACGTC 2 cut(s) 346, 553
AjnI CCWGG 2 cut(s) 22, 35
AluBI AGCT 2 cut(s) 62, 672
AluI AGCT 2 cut(s) 62, 672
Alw26I GTCTC 1 cut(s) 670
AlwI GGATC 2 cut(s) 169, 460
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 3 cut(s) 33, 273, 657
ApeKI GCWGC 1 cut(s) 504
AspLEI GCGC 2 cut(s) 154, 190
AspS9I GGNCC 2 cut(s) 273, 286
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 4 cut(s) 200, 229, 241, 560
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 491
BccI CCATC 2 cut(s) 539, 591
BceAI ACGGC 3 cut(s) 85, 160, 508
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 2 cut(s) 24, 37
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 670
BisI GCNGC 1 cut(s) 505
BlsI GCNGC 1 cut(s) 506
Bme1390I CCNGG 3 cut(s) 24, 37, 470
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 2 cut(s) 346, 553
BmgT120I GGNCC 2 cut(s) 273, 286
BmiI GGNNCC 2 cut(s) 148, 287
BmrFI CCNGG 3 cut(s) 24, 37, 470
BpmI CTGGAG 2 cut(s) 404, 479
BpuEI CTTGAG 1 cut(s) 694
BpuMI CCSGG 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 6 cut(s) 305, 335, 359, 389, 548, 578
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 295, 475
Bse118I RCCGGY 2 cut(s) 190, 275
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 24, 37
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 6 cut(s) 451, 550, 580, 586, 613, 662
BseLI CCNNNNNNNGG 3 cut(s) 282, 295, 475
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 5 cut(s) 326, 476, 554, 572, 575
BseXI GCAGC 1 cut(s) 491
BsgI GTGCAG 1 cut(s) 490
Bsh1236I CGCG 3 cut(s) 152, 188, 259
BshFI GGCC 3 cut(s) 35, 275, 659
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 4 cut(s) 107, 191, 276, 470
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 3 cut(s) 282, 295, 475
BsmAI GTCTC 1 cut(s) 670
BsmBI CGTCTC 1 cut(s) 670
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 3 cut(s) 35, 275, 659
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 3 cut(s) 159, 174, 465
BspACI CCGC 8 cut(s) 150, 211, 259, 266, 433, 455, 495, 513
BspANI GGCC 3 cut(s) 35, 275, 659
BspFNI CGCG 3 cut(s) 152, 188, 259
BspLI GGNNCC 2 cut(s) 148, 287
BspPI GGATC 2 cut(s) 169, 460
BspT107I GGYRCC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 213
BsrFI RCCGGY 2 cut(s) 190, 275
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 2 cut(s) 190, 275
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 159, 174, 465
Bst2UI CCWGG 2 cut(s) 24, 37
Bst4CI ACNGT 2 cut(s) 75, 527
BstC8I GCNNGC 3 cut(s) 192, 277, 380
BstDEI CTNAG 1 cut(s) 654
BstF5I GGATG 6 cut(s) 451, 550, 580, 586, 613, 662
BstFNI CGCG 3 cut(s) 152, 188, 259
BstHHI GCGC 2 cut(s) 154, 190
BstKTI GATC 3 cut(s) 162, 177, 468
BstMAI GTCTC 1 cut(s) 670
BstMBI GATC 3 cut(s) 159, 174, 465
BstMWI GCNNNNNNNGC 4 cut(s) 272, 501, 510, 678
BstNI CCWGG 2 cut(s) 24, 37
BstSCI CCNGG 3 cut(s) 22, 35, 468
BstUI CGCG 3 cut(s) 152, 188, 259
BstV1I GCAGC 1 cut(s) 491
BstX2I RGATCY 2 cut(s) 174, 465
BstYI RGATCY 2 cut(s) 174, 465
BsuRI GGCC 3 cut(s) 35, 275, 659
BtgZI GCGATG 1 cut(s) 431
BtrI CACGTC 2 cut(s) 346, 553
BtsCI GGATG 6 cut(s) 451, 550, 580, 586, 613, 662
Cac8I GCNNGC 3 cut(s) 192, 277, 380
CfoI GCGC 2 cut(s) 154, 190
Cfr10I RCCGGY 2 cut(s) 190, 275
Cfr13I GGNCC 2 cut(s) 273, 286
CseI GACGC 3 cut(s) 194, 211, 687
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 571, 625
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 654
DpnI GATC 3 cut(s) 161, 176, 467
DpnII GATC 3 cut(s) 159, 174, 465
Eco147I AGGCCT 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 22, 35
Esp3I CGTCTC 1 cut(s) 670
FaeI CATG 2 cut(s) 574, 628
FaiI YATR 4 cut(s) 71, 96, 572, 626
FaqI GGGAC 1 cut(s) 503
FatI CATG 2 cut(s) 570, 624
FauI CCCGC 4 cut(s) 252, 426, 488, 506
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 505
FokI GGATG 6 cut(s) 438, 557, 587, 593, 620, 649
Fsp4HI GCNGC 1 cut(s) 505
GlaI GCGC 2 cut(s) 153, 189
GluI GCNGC 1 cut(s) 505
GsuI CTGGAG 2 cut(s) 404, 479
HaeIII GGCC 3 cut(s) 35, 275, 659
HapII CCGG 4 cut(s) 107, 191, 276, 470
HgaI GACGC 3 cut(s) 194, 211, 687
HhaI GCGC 2 cut(s) 154, 190
Hin1II CATG 2 cut(s) 574, 628
Hin6I GCGC 2 cut(s) 152, 188
HinP1I GCGC 2 cut(s) 152, 188
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 60, 670
HinfI GANTC 4 cut(s) 55, 89, 110, 138
HpaII CCGG 4 cut(s) 107, 191, 276, 470
HphI GGTGA 4 cut(s) 200, 229, 241, 560
Hpy166II GTNNAC 2 cut(s) 12, 478
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 4 cut(s) 157, 199, 337, 400
Hpy8I GTNNAC 2 cut(s) 12, 478
Hpy99I CGWCG 4 cut(s) 16, 167, 188, 284
HpyAV CCTTC 5 cut(s) 220, 229, 310, 319, 397
HpyCH4III ACNGT 2 cut(s) 75, 527
HpyCH4IV ACGT 2 cut(s) 345, 552
HpyCH4V TGCA 2 cut(s) 372, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 501, 510, 678
HpySE526I ACGT 2 cut(s) 345, 552
Hsp92II CATG 2 cut(s) 574, 628
HspAI GCGC 2 cut(s) 152, 188
KroI GCCGGC 2 cut(s) 190, 275
KroNI GCCGGC 2 cut(s) 192, 277
Kzo9I GATC 3 cut(s) 159, 174, 465
Lsp1109I GCAGC 1 cut(s) 491
MaeII ACGT 2 cut(s) 345, 552
MaeIII GTNAC 3 cut(s) 102, 199, 548
MalI GATC 3 cut(s) 161, 176, 467
MbiI CCGCTC 1 cut(s) 213
MboI GATC 3 cut(s) 159, 174, 465
MboII GAAGA 1 cut(s) 122
MflI RGATCY 2 cut(s) 174, 465
MluCI AATT 1 cut(s) 362
MmeI TCCRAC 2 cut(s) 202, 546
MreI CGCCGGCG 1 cut(s) 190
MroNI GCCGGC 2 cut(s) 190, 275
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 4 cut(s) 107, 191, 276, 470
MspR9I CCNGG 3 cut(s) 24, 37, 470
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 2 cut(s) 24, 37
MvnI CGCG 3 cut(s) 152, 188, 259
MwoI GCNNNNNNNGC 4 cut(s) 272, 501, 510, 678
NaeI GCCGGC 2 cut(s) 192, 277
NciI CCSGG 1 cut(s) 470
NdeII GATC 3 cut(s) 159, 174, 465
NgoMIV GCCGGC 2 cut(s) 190, 275
NlaIII CATG 2 cut(s) 574, 628
NlaIV GGNNCC 2 cut(s) 148, 287
NmuCI GTSAC 2 cut(s) 199, 548
PaeR7I CTCGAG 1 cut(s) 155
PceI AGGCCT 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PctI GAATGC 1 cut(s) 226
PdiI GCCGGC 2 cut(s) 192, 277
PfeI GAWTC 4 cut(s) 55, 89, 110, 138
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 22, 35
PspGI CCWGG 2 cut(s) 22, 35
PspN4I GGNNCC 2 cut(s) 148, 287
PspPI GGNCC 2 cut(s) 273, 286
PsuI RGATCY 2 cut(s) 174, 465
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 575
SalI GTCGAC 1 cut(s) 10
SatI GCNGC 1 cut(s) 505
Sau3AI GATC 3 cut(s) 159, 174, 465
Sau96I GGNCC 2 cut(s) 273, 286
ScrFI CCNGG 3 cut(s) 24, 37, 470
SetI ASST 8 cut(s) 11, 64, 231, 321, 348, 477, 555, 674
Sfr274I CTCGAG 1 cut(s) 155
SgrAI CRCCGGYG 1 cut(s) 190
SinI GGWCC 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 2 cut(s) 155, 673
SmoI CTYRAG 2 cut(s) 155, 673
Sse9I AATT 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 659
SsiI CCGC 8 cut(s) 150, 211, 259, 266, 433, 455, 495, 513
StuI AGGCCT 1 cut(s) 659
StyD4I CCNGG 3 cut(s) 22, 35, 468
TaaI ACNGT 2 cut(s) 75, 527
TaiI ACGT 2 cut(s) 348, 555
TaqI TCGA 4 cut(s) 11, 156, 162, 294
TasI AATT 1 cut(s) 362
TfiI GAWTC 4 cut(s) 55, 89, 110, 138
TseFI GTSAC 2 cut(s) 199, 548
TseI GCWGC 1 cut(s) 504
Tsp45I GTSAC 2 cut(s) 199, 548
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.