Rmu_sc0002609.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002609.1
Physical Location & Seq
Reverse (-)
4179 .. 6044
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002609.1_g000002.1.cds

Sequence Viewer

Length: 1152 bp
atgtgtaggtcgacggagtaccccggctttcgggccagaagagaagccctaaagattcgagctttcttcatacggttttcgggtttggattctcataagccgttaccggaatcgctcacgctttcgtatcttccaagaatcaacggcaccgcgctcgagatcgacgggtccaagatccgacccgactcgccggctttcgtgacgctccaccgcgcggtgaatgcgaaggtggggaagggggaggcgatattcgggtcgcgggaggcggttcgggccggcgacggggcccagttcgaggcgtatttgagggaggagaaggtgttgaaggggattttcaggaaagacgtggggcaggagtggaatttggagtgcaagtgcgtgctggagagcgagagtgtcggggaggaggtcacggcggcggaggtgtgcgtggccgtggagggacacgtggcgatgagcgagagggtcgcgatgattgtgaaaaggccgggaaagtgtgggtttcatccgctggaggagatcccggaggtggacgaggaatcggacggcgggtgttgctgcacttgcgggaaaatggacggtggagatttggaggaggatggtgacgtggaggaggagttggacatggatgtggatgtggagggagtgagatgggctgtggatgtgggcttttgggtcatgtgtttgggtgtgggctacttggggtgcactgtggttcatggatctgtagtggctcgaagttttcatctgatcgagtcttgcttgggtcgaagcttctatatggctggggaagttgtggatccgattcaagggactacgtgggctcgtgttctggcaacggcggcatcacgggatgcagccggtgctctaggggcacaggggatcttttctttttggatcgggtctagtgtcgtttgggttacttgttgtcctcgtgatggtggtgctgtggtgtggcggtggctggcttgcaacgtgcggcgtcctcaacaagggaagacagaatcgcaacagggctgggtcagcttgggcttcgggctctgctcttctttgggccatcaggttgggaggaccgagccttctagcgcctccggcgtagtaccaaagggggaccccgctatgtctacgatgtattcaatgtcaaatgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

383

Amino Acids

41.44

Weight (kDa)

5.11

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 2 cut(s) 11, 1124
AccII CGCG 5 cut(s) 152, 213, 215, 259, 470
AclWI GGATC 7 cut(s) 169, 514, 730, 794, 807, 890, 905
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 361
AcvI CACGTG 1 cut(s) 448
AcyI GRCGYC 1 cut(s) 982
AfaI GTAC 2 cut(s) 20, 1101
AfiI CCNNNNNNNGG 8 cut(s) 30, 214, 282, 295, 529, 809, 938, 992
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 3 cut(s) 325, 809, 1137
AjiI CACGTC 2 cut(s) 346, 607
AluBI AGCT 3 cut(s) 62, 774, 1026
AluI AGCT 3 cut(s) 62, 774, 1026
Alw21I GWGCWC 2 cut(s) 710, 868
Alw44I GTGCAC 1 cut(s) 706
AlwI GGATC 7 cut(s) 169, 514, 730, 794, 807, 890, 905
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 6 cut(s) 33, 273, 285, 432, 485, 1054
ApaI GGGCCC 1 cut(s) 289
ApaLI GTGCAC 1 cut(s) 706
ApeKI GCWGC 2 cut(s) 558, 857
ApoI RAATTY 1 cut(s) 361
AspLEI GCGC 3 cut(s) 154, 215, 1088
AspS9I GGNCC 8 cut(s) 33, 168, 273, 285, 286, 1054, 1071, 1111
AsuC2I CCSGG 3 cut(s) 24, 489, 524
AsuHPI GGTGA 2 cut(s) 229, 614
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 3 cut(s) 168, 1071, 1111
BaeGI GKGCMC 3 cut(s) 289, 710, 877
BamHI GGATCC 1 cut(s) 799
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 3 cut(s) 289, 826, 1041
BauI CACGAG 2 cut(s) 825, 933
BbrPI CACGTG 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 1004
Bbv12I GWGCWC 2 cut(s) 710, 868
BbvI GCAGC 2 cut(s) 545, 869
BccI CCATC 4 cut(s) 593, 645, 932, 1065
BceAI ACGGC 6 cut(s) 85, 160, 419, 429, 562, 855
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BcnI CCSGG 3 cut(s) 24, 489, 524
BfaI CTAG 3 cut(s) 869, 906, 1083
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 1089
BisI GCNGC 5 cut(s) 417, 559, 843, 858, 980
BlsI GCNGC 5 cut(s) 418, 560, 844, 859, 981
Bme1390I CCNGG 3 cut(s) 24, 489, 524
Bme18I GGWCC 3 cut(s) 168, 1071, 1111
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 2 cut(s) 346, 607
BmgT120I GGNCC 8 cut(s) 33, 168, 273, 285, 286, 1054, 1071, 1111
BmiI GGNNCC 7 cut(s) 148, 169, 286, 287, 801, 1112, 1113
BmrFI CCNGG 3 cut(s) 24, 489, 524
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 2 cut(s) 844, 854
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 1004
BpmI CTGGAG 2 cut(s) 404, 533
BpuMI CCSGG 3 cut(s) 24, 489, 524
BsaAI YACGTR 2 cut(s) 448, 819
BsaHI GRCGYC 1 cut(s) 982
BsaJI CCNNGG 2 cut(s) 22, 435
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 6 cut(s) 305, 335, 359, 389, 602, 632
Bsc4I CCNNNNNNNGG 8 cut(s) 30, 214, 282, 295, 529, 809, 938, 992
Bse118I RCCGGY 3 cut(s) 190, 275, 860
Bse1I ACTGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 22, 435
BseGI GGATG 6 cut(s) 505, 604, 634, 640, 667, 859
BseLI CCNNNNNNNGG 8 cut(s) 30, 214, 282, 295, 529, 809, 938, 992
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 6 cut(s) 326, 419, 530, 608, 626, 629
BseSI GKGCMC 3 cut(s) 289, 710, 877
BseXI GCAGC 2 cut(s) 545, 869
BseYI CCCAGC 2 cut(s) 785, 1017
BsgI GTGCAG 1 cut(s) 544
Bsh1236I CGCG 5 cut(s) 152, 213, 215, 259, 470
BshFI GGCC 6 cut(s) 35, 275, 287, 434, 487, 1056
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 710, 868
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 8 cut(s) 24, 107, 191, 276, 488, 524, 861, 1092
BslFI GGGAC 3 cut(s) 456, 826, 1124
BslI CCNNNNNNNGG 8 cut(s) 30, 214, 282, 295, 529, 809, 938, 992
BsmFI GGGAC 3 cut(s) 456, 826, 1124
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 6 cut(s) 35, 275, 287, 434, 487, 1056
BsoBI CYCGRG 1 cut(s) 155
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 6 cut(s) 289, 710, 826, 868, 877, 1041
Bsp143I GATC 8 cut(s) 159, 174, 519, 722, 750, 799, 882, 897
Bsp68I TCGCGA 1 cut(s) 470
BspANI GGCC 6 cut(s) 35, 275, 287, 434, 487, 1056
BspFNI CGCG 5 cut(s) 152, 213, 215, 259, 470
BspLI GGNNCC 7 cut(s) 148, 169, 286, 287, 801, 1112, 1113
BspPI GGATC 7 cut(s) 169, 514, 730, 794, 807, 890, 905
BspQI GCTCTTC 1 cut(s) 1051
BspT107I GGYRCC 1 cut(s) 146
BsrFI RCCGGY 3 cut(s) 190, 275, 860
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 3 cut(s) 190, 275, 860
BssECI CCNNGG 2 cut(s) 22, 435
BssMI GATC 8 cut(s) 159, 174, 519, 722, 750, 799, 882, 897
BssNI GRCGYC 1 cut(s) 982
BssSI CACGAG 2 cut(s) 825, 933
Bst2BI CACGAG 2 cut(s) 825, 933
Bst4CI ACNGT 3 cut(s) 75, 581, 712
Bst6I CTCTTC 2 cut(s) 34, 1051
BstACI GRCGYC 1 cut(s) 982
BstAPI GCANNNNNTGC 1 cut(s) 863
BstBAI YACGTR 2 cut(s) 448, 819
BstC8I GCNNGC 5 cut(s) 192, 277, 380, 966, 970
BstDSI CCRYGG 1 cut(s) 435
BstENI CCTNNNNNAGG 1 cut(s) 990
BstF5I GGATG 6 cut(s) 505, 604, 634, 640, 667, 859
BstFNI CGCG 5 cut(s) 152, 213, 215, 259, 470
BstH2I RGCGCY 1 cut(s) 1089
BstHHI GCGC 3 cut(s) 154, 215, 1088
BstKTI GATC 8 cut(s) 162, 177, 522, 725, 753, 802, 885, 900
BstMBI GATC 8 cut(s) 159, 174, 519, 722, 750, 799, 882, 897
BstMWI GCNNNNNNNGC 9 cut(s) 221, 272, 555, 564, 842, 863, 872, 1023, 1092
BstSCI CCNGG 3 cut(s) 22, 487, 522
BstSFI CTRYAG 1 cut(s) 726
BstSLI GKGCMC 3 cut(s) 289, 710, 877
BstUI CGCG 5 cut(s) 152, 213, 215, 259, 470
BstV1I GCAGC 2 cut(s) 545, 869
BstV2I GAAGAC 1 cut(s) 1004
BstX2I RGATCY 5 cut(s) 174, 519, 722, 799, 882
BstXI CCANNNNNNTGG 1 cut(s) 1064
BstYI RGATCY 5 cut(s) 174, 519, 722, 799, 882
BsuRI GGCC 6 cut(s) 35, 275, 287, 434, 487, 1056
BtgI CCRYGG 1 cut(s) 435
BtgZI GCGATG 2 cut(s) 467, 485
BtrI CACGTC 2 cut(s) 346, 607
BtsCI GGATG 6 cut(s) 505, 604, 634, 640, 667, 859
BtsIMutI CAGTG 1 cut(s) 708
BtuMI TCGCGA 1 cut(s) 470
Cac8I GCNNGC 5 cut(s) 192, 277, 380, 966, 970
CfoI GCGC 3 cut(s) 154, 215, 1088
Cfr10I RCCGGY 3 cut(s) 190, 275, 860
Cfr13I GGNCC 8 cut(s) 33, 168, 273, 285, 286, 1054, 1071, 1111
CseI GACGC 2 cut(s) 211, 971
Csp6I GTAC 2 cut(s) 19, 1100
CviAII CATG 3 cut(s) 625, 679, 719
CviQI GTAC 2 cut(s) 19, 1100
DpnI GATC 8 cut(s) 161, 176, 521, 724, 752, 801, 884, 899
DpnII GATC 8 cut(s) 159, 174, 519, 722, 750, 799, 882, 897
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 2 cut(s) 34, 1051
EarI CTCTTC 2 cut(s) 34, 1051
EciI GGCGGA 1 cut(s) 434
Eco24I GRGCYC 3 cut(s) 289, 826, 1041
Eco47I GGWCC 3 cut(s) 168, 1071, 1111
Eco72I CACGTG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 990
EcoO109I RGGNCCY 2 cut(s) 285, 1111
EcoT38I GRGCYC 3 cut(s) 289, 826, 1041
FaeI CATG 3 cut(s) 628, 682, 722
FaiI YATR 8 cut(s) 71, 96, 626, 680, 720, 780, 782, 1121
FaqI GGGAC 3 cut(s) 456, 826, 1124
FatI CATG 3 cut(s) 624, 678, 718
FauI CCCGC 4 cut(s) 252, 542, 560, 1123
FblI GTMKAC 2 cut(s) 11, 1124
Fnu4HI GCNGC 5 cut(s) 417, 559, 843, 858, 980
FokI GGATG 6 cut(s) 492, 611, 641, 647, 674, 866
FriOI GRGCYC 3 cut(s) 289, 826, 1041
Fsp4HI GCNGC 5 cut(s) 417, 559, 843, 858, 980
FspBI CTAG 3 cut(s) 869, 906, 1083
GlaI GCGC 3 cut(s) 153, 214, 1087
GluI GCNGC 5 cut(s) 417, 559, 843, 858, 980
GsaI CCCAGC 2 cut(s) 789, 1021
GsuI CTGGAG 2 cut(s) 404, 533
HaeII RGCGCY 1 cut(s) 1089
HaeIII GGCC 6 cut(s) 35, 275, 287, 434, 487, 1056
HapII CCGG 8 cut(s) 24, 107, 191, 276, 488, 524, 861, 1092
HgaI GACGC 2 cut(s) 211, 971
HhaI GCGC 3 cut(s) 154, 215, 1088
Hin1I GRCGYC 1 cut(s) 982
Hin1II CATG 3 cut(s) 628, 682, 722
Hin6I GCGC 3 cut(s) 152, 213, 1086
HinP1I GCGC 3 cut(s) 152, 213, 1086
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 772
HinfI GANTC 9 cut(s) 55, 89, 110, 138, 185, 539, 755, 805, 1004
HpaII CCGG 8 cut(s) 24, 107, 191, 276, 488, 524, 861, 1092
HphI GGTGA 2 cut(s) 229, 614
Hpy166II GTNNAC 4 cut(s) 12, 532, 708, 1125
Hpy188I TCNGA 4 cut(s) 179, 544, 750, 804
Hpy188III TCNNGA 5 cut(s) 157, 199, 337, 469, 935
Hpy8I GTNNAC 4 cut(s) 12, 532, 708, 1125
Hpy99I CGWCG 3 cut(s) 16, 167, 284
HpyAV CCTTC 5 cut(s) 220, 229, 310, 319, 1089
HpyCH4III ACNGT 3 cut(s) 75, 581, 712
HpyCH4IV ACGT 5 cut(s) 345, 447, 606, 818, 975
HpyCH4V TGCA 5 cut(s) 372, 561, 708, 857, 972
HpyF10VI GCNNNNNNNGC 9 cut(s) 221, 272, 555, 564, 842, 863, 872, 1023, 1092
HpySE526I ACGT 5 cut(s) 345, 447, 606, 818, 975
Hsp92I GRCGYC 1 cut(s) 982
Hsp92II CATG 3 cut(s) 628, 682, 722
HspAI GCGC 3 cut(s) 152, 213, 1086
KflI GGGWCCC 1 cut(s) 1111
KroI GCCGGC 2 cut(s) 190, 275
KroNI GCCGGC 2 cut(s) 192, 277
Kzo9I GATC 8 cut(s) 159, 174, 519, 722, 750, 799, 882, 897
LguI GCTCTTC 1 cut(s) 1051
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 545, 869
LweI GCATC 2 cut(s) 844, 854
MaeI CTAG 3 cut(s) 869, 906, 1083
MaeII ACGT 5 cut(s) 345, 447, 606, 818, 975
MaeIII GTNAC 5 cut(s) 102, 199, 409, 602, 919
MalI GATC 8 cut(s) 161, 176, 521, 724, 752, 801, 884, 899
MboI GATC 8 cut(s) 159, 174, 519, 722, 750, 799, 882, 897
MboII GAAGA 5 cut(s) 51, 58, 122, 1009, 1038
MflI RGATCY 5 cut(s) 174, 519, 722, 799, 882
MhlI GDGCHC 6 cut(s) 289, 710, 826, 868, 877, 1041
MluCI AATT 1 cut(s) 361
MlyI GAGTC 2 cut(s) 179, 764
MmeI TCCRAC 2 cut(s) 202, 600
MroNI GCCGGC 2 cut(s) 190, 275
MslI CAYNNNNRTG 1 cut(s) 629
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 8 cut(s) 24, 107, 191, 276, 488, 524, 861, 1092
MspR9I CCNGG 3 cut(s) 24, 489, 524
Mva1269I GAATGC 1 cut(s) 226
MvnI CGCG 5 cut(s) 152, 213, 215, 259, 470
MwoI GCNNNNNNNGC 9 cut(s) 221, 272, 555, 564, 842, 863, 872, 1023, 1092
NaeI GCCGGC 2 cut(s) 192, 277
NciI CCSGG 3 cut(s) 24, 489, 524
NdeII GATC 8 cut(s) 159, 174, 519, 722, 750, 799, 882, 897
NgoMIV GCCGGC 2 cut(s) 190, 275
NlaIII CATG 3 cut(s) 628, 682, 722
NlaIV GGNNCC 7 cut(s) 148, 169, 286, 287, 801, 1112, 1113
NmuCI GTSAC 3 cut(s) 199, 409, 602
NruI TCGCGA 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 1051
PctI GAATGC 1 cut(s) 226
PdiI GCCGGC 2 cut(s) 192, 277
PfeI GAWTC 7 cut(s) 55, 89, 110, 138, 539, 805, 1004
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 5 cut(s) 418, 560, 844, 859, 981
PleI GAGTC 2 cut(s) 179, 763
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
PpsI GAGTC 2 cut(s) 179, 763
Ppu21I YACGTR 2 cut(s) 448, 819
PpuMI RGGWCCY 1 cut(s) 1111
Psp5II RGGWCCY 1 cut(s) 1111
PspCI CACGTG 1 cut(s) 448
PspFI CCCAGC 2 cut(s) 785, 1017
PspN4I GGNNCC 7 cut(s) 148, 169, 286, 287, 801, 1112, 1113
PspOMI GGGCCC 1 cut(s) 285
PspPI GGNCC 8 cut(s) 33, 168, 273, 285, 286, 1054, 1071, 1111
PspPPI RGGWCCY 1 cut(s) 1111
PsuI RGATCY 5 cut(s) 174, 519, 722, 799, 882
RruI TCGCGA 1 cut(s) 470
RsaI GTAC 2 cut(s) 20, 1101
RsaNI GTAC 2 cut(s) 19, 1100
RseI CAYNNNNRTG 1 cut(s) 629
SalI GTCGAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 1051
SatI GCNGC 5 cut(s) 417, 559, 843, 858, 980
Sau3AI GATC 8 cut(s) 159, 174, 519, 722, 750, 799, 882, 897
Sau96I GGNCC 8 cut(s) 33, 168, 273, 285, 286, 1054, 1071, 1111
SchI GAGTC 2 cut(s) 179, 764
ScrFI CCNGG 3 cut(s) 24, 489, 524
SduI GDGCHC 6 cut(s) 289, 710, 826, 868, 877, 1041
SfaNI GCATC 2 cut(s) 844, 854
SfcI CTRYAG 1 cut(s) 726
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 3 cut(s) 168, 1071, 1111
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 361
SspMI CTAG 3 cut(s) 869, 906, 1083
StyD4I CCNGG 3 cut(s) 22, 487, 522
TaaI ACNGT 3 cut(s) 75, 581, 712
TaiI ACGT 5 cut(s) 348, 450, 609, 821, 978
TaqI TCGA 8 cut(s) 11, 58, 156, 162, 294, 736, 753, 769
TaqII GACCGA 1 cut(s) 1088
TasI AATT 1 cut(s) 361
TauI GCSGC 3 cut(s) 419, 845, 982
TfiI GAWTC 7 cut(s) 55, 89, 110, 138, 539, 805, 1004
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 3 cut(s) 199, 409, 602
TseI GCWGC 2 cut(s) 558, 857
Tsp45I GTSAC 3 cut(s) 199, 409, 602
TspDTI ATGAA 4 cut(s) 58, 494, 707, 734
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 715
VneI GTGCAC 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 168, 1071, 1111
XagI CCTNNNNNAGG 1 cut(s) 990
XapI RAATTY 1 cut(s) 361
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 2 cut(s) 11, 1124
XspI CTAG 3 cut(s) 869, 906, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.