Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011286

Physical Location & Seq

Genomic Coordinates Reverse (-)

25670105 .. 25670860

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1117900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTGTAGATCGACGGACTACCACGGATTCCAGTCACGCAGAGACCGATTGAAGATTCGGGAATTTTTTCTGCGGTTTTCGGGTTTGAATACCCGGGAAACGTTACCCGAATCGCTCAGTCTTATTTATCTTCCACGGATCAACGAAAACAAGCTTGAGATCGACGGGTCGAAGATCCGACCCGAGTCGCCGGCGTTTGTGACGCTGTACCGGGTCGTGAACGCGAAGGTGAGAGAAGGAGAGGTGGTATTCGGGTCCAGGGAACGGGTCGAGGCCGGCGACGGGATCCGGTTCGAGGTGTATCTGAGGGAGGAGAAGGTGTTGAAGGGACTTTTCAGGAAGGACGAGGGGCAAGAGTGGAAATTGGAGTGTAAGTGCGTGCTGGAGGGCGAGAGGGTCGCGGCGGAGGTCACGGAGGCTGAGGTCTGCGTGGCGGTGGAGGGACACGTGGCGATGAATGAGAGAGTGAGCATGGTGGTTAAAAAGACGATAAAGCACCGGAAATGCGGGTTCAAGCGGTTGGAGGAGATCCCTGAGGAGGGAGAGGTGGATGATGAATCGGACGGCTGCTGTTGTCACTGTGGATCGGACGGTGGAGATTCGGAGACGGGGAGTGACGTGGATGGTGAGGATGAGGGGGAGATGGAGATGGATATGGGAGGAGTGAGATGGGCCGTGGATGTGGGGATCTGGGTCATGTGTTTGGGTGTGGGCTACTTTGTTTCTAAAGCCTCTTCCAAAAGCTTAACACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.32

Weight (kDa)

5.1

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24110
fragaria_vesca	FvH4_5g10980
malus_domestica	MD06G1117900.v1.1 MD14G1125500.v1.1
prunus_persica	Prupe.5G129000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186241 RchiOBHm_Chr7g0186841
rosa_laevigata	RLG00000004811
rosa_multiflora	Rmu_sc0002609.1_g000002 Rmu_sc0012555.1_g000001 Rmu_ssc0000024.1_g000039
rosa_roxburghii	Rroxscaffold_3G00267780
rosa_rugosa	Rorug06G0472900 Rorug06G0477400
rosa_samantha	Rh7BG079800 Rh7CG079800 Rh7DG080300 Rh7DG085000
rosa_wichuraiana	Rw7G006680 Rw7G007300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	224, 401
AciI	CCGC	6 cut(s)	73, 401, 404, 434, 507, 517
AclI	AACGTT	1 cut(s)	101
AclWI	GGATC	7 cut(s)	146, 169, 280, 293, 523, 592, 695
AcsI	RAATTY	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	448
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	5 cut(s)	264, 282, 295, 538, 539
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	4 cut(s)	52, 88, 325, 514
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	2 cut(s)	154, 744
AluI	AGCT	2 cut(s)	154, 744
Alw26I	GTCTC	2 cut(s)	36, 599
AlwI	GGATC	7 cut(s)	146, 169, 280, 293, 523, 592, 695
Ama87I	CYCGRG	2 cut(s)	93, 182
AoxI	GGCC	2 cut(s)	273, 672
ApeKI	GCWGC	1 cut(s)	567
ApoI	RAATTY	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	255, 672
AsuC2I	CCSGG	3 cut(s)	94, 95, 212
AsuHPI	GGTGA	2 cut(s)	241, 638
AvaI	CYCGRG	2 cut(s)	93, 182
AvaII	GGWCC	1 cut(s)	255
AxyI	CCTNAGG	1 cut(s)	534
BamHI	GGATCC	1 cut(s)	285
BbrPI	CACGTG	1 cut(s)	448
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	4 cut(s)	617, 637, 643, 663
BceAI	ACGGC	2 cut(s)	580, 659
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	3 cut(s)	94, 95, 212
BcoDI	GTCTC	2 cut(s)	36, 599
BisI	GCNGC	2 cut(s)	402, 568
BlsI	GCNGC	2 cut(s)	403, 569
Bme1390I	CCNGG	4 cut(s)	94, 95, 212, 259
Bme18I	GGWCC	1 cut(s)	255
BmeT110I	CYCGRG	2 cut(s)	93, 182
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	2 cut(s)	255, 672
BmiI	GGNNCC	2 cut(s)	256, 287
BmrFI	CCNGG	4 cut(s)	94, 95, 212, 259
BoxI	GACNNNNGTC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	3 cut(s)	94, 95, 212
BsaAI	YACGTR	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	5 cut(s)	22, 93, 134, 258, 675
BsaWI	WCCGGW	2 cut(s)	288, 498
BsaXI	ACNNNNNCTCC	6 cut(s)	231, 261, 305, 335, 359, 389
Bsc4I	CCNNNNNNNGG	5 cut(s)	264, 282, 295, 538, 539
Bse118I	RCCGGY	2 cut(s)	190, 275
Bse1I	ACTGG	1 cut(s)	31
Bse21I	CCTNAGG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	5 cut(s)	22, 93, 134, 258, 675
BseGI	GGATG	4 cut(s)	556, 628, 637, 685
BseLI	CCNNNNNNNGG	5 cut(s)	264, 282, 295, 538, 539
BseMII	CTCAG	4 cut(s)	130, 296, 411, 525
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	4 cut(s)	326, 539, 551, 675
BseXI	GCAGC	1 cut(s)	554
Bsh1236I	CGCG	2 cut(s)	224, 401
BshFI	GGCC	2 cut(s)	275, 674
BsiHKCI	CYCGRG	2 cut(s)	93, 182
BsiSI	CCGG	6 cut(s)	94, 191, 211, 276, 289, 499
BslFI	GGGAC	2 cut(s)	342, 456
BslI	CCNNNNNNNGG	5 cut(s)	264, 282, 295, 538, 539
BsmAI	GTCTC	2 cut(s)	36, 599
BsmBI	CGTCTC	1 cut(s)	599
BsmFI	GGGAC	2 cut(s)	342, 456
BsnI	GGCC	2 cut(s)	275, 674
Bso31I	GGTCTC	1 cut(s)	36
BsoBI	CYCGRG	2 cut(s)	93, 182
Bsp143I	GATC	8 cut(s)	8, 138, 159, 174, 285, 528, 584, 687
BspACI	CCGC	6 cut(s)	73, 401, 404, 434, 507, 517
BspANI	GGCC	2 cut(s)	275, 674
BspCNI	CTCAG	4 cut(s)	129, 297, 412, 526
BspFNI	CGCG	2 cut(s)	224, 401
BspLI	GGNNCC	2 cut(s)	256, 287
BspPI	GGATC	7 cut(s)	146, 169, 280, 293, 523, 592, 695
BspTNI	GGTCTC	1 cut(s)	36
BsrFI	RCCGGY	2 cut(s)	190, 275
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	2 cut(s)	190, 275
BssECI	CCNNGG	5 cut(s)	22, 93, 134, 258, 675
BssMI	GATC	8 cut(s)	8, 138, 159, 174, 285, 528, 584, 687
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	581, 593
Bst6I	CTCTTC	1 cut(s)	739
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	3 cut(s)	192, 277, 380
BstDEI	CTNAG	4 cut(s)	116, 305, 420, 534
BstDSI	CCRYGG	3 cut(s)	22, 134, 675
BstF5I	GGATG	4 cut(s)	556, 628, 637, 685
BstFNI	CGCG	2 cut(s)	224, 401
BstKTI	GATC	8 cut(s)	11, 141, 162, 177, 288, 531, 587, 690
BstMAI	GTCTC	2 cut(s)	36, 599
BstMBI	GATC	8 cut(s)	8, 138, 159, 174, 285, 528, 584, 687
BstMWI	GCNNNNNNNGC	1 cut(s)	750
BstNI	CCWGG	1 cut(s)	259
BstPAI	GACNNNNGTC	1 cut(s)	184
BstSCI	CCNGG	4 cut(s)	92, 93, 210, 257
BstUI	CGCG	2 cut(s)	224, 401
BstV1I	GCAGC	1 cut(s)	554
BstX2I	RGATCY	4 cut(s)	174, 285, 528, 687
BstYI	RGATCY	4 cut(s)	174, 285, 528, 687
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	275, 674
BtgI	CCRYGG	3 cut(s)	22, 134, 675
BtgZI	GCGATG	1 cut(s)	467
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	4 cut(s)	556, 628, 637, 685
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	192, 277, 380
Cfr10I	RCCGGY	2 cut(s)	190, 275
Cfr13I	GGNCC	2 cut(s)	255, 672
Cfr9I	CCCGGG	1 cut(s)	93
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	472, 697
CviJI	RGCY	8 cut(s)	154, 275, 419, 567, 674, 714, 731, 744
CviKI_1	RGCY	8 cut(s)	154, 275, 419, 567, 674, 714, 731, 744
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	116, 305, 420, 534
DpnI	GATC	8 cut(s)	10, 140, 161, 176, 287, 530, 586, 689
DpnII	GATC	8 cut(s)	8, 138, 159, 174, 285, 528, 584, 687
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
EciI	GGCGGA	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	255
Eco72I	CACGTG	1 cut(s)	448
Eco81I	CCTNAGG	1 cut(s)	534
Eco88I	CYCGRG	2 cut(s)	93, 182
EcoRII	CCWGG	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	599
FaeI	CATG	2 cut(s)	475, 700
FaiI	YATR	3 cut(s)	473, 656, 698
FaqI	GGGAC	2 cut(s)	342, 456
FatI	CATG	2 cut(s)	471, 696
FauI	CCCGC	1 cut(s)	500
Fnu4HI	GCNGC	2 cut(s)	402, 568
FokI	GGATG	4 cut(s)	563, 635, 644, 692
Fsp4HI	GCNGC	2 cut(s)	402, 568
GluI	GCNGC	2 cut(s)	402, 568
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	275, 674
HapII	CCGG	6 cut(s)	94, 191, 211, 276, 289, 499
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	475, 700
HindIII	AAGCTT	2 cut(s)	152, 742
HinfI	GANTC	6 cut(s)	27, 55, 110, 185, 557, 599
HpaII	CCGG	6 cut(s)	94, 191, 211, 276, 289, 499
HphI	GGTGA	2 cut(s)	241, 638
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	179, 306, 562, 589, 604
Hpy188III	TCNNGA	3 cut(s)	59, 217, 337
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	3 cut(s)	16, 167, 284
HpyAV	CCTTC	5 cut(s)	220, 230, 310, 319, 334
HpyCH4III	ACNGT	2 cut(s)	581, 593
HpyCH4IV	ACGT	3 cut(s)	101, 447, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	750
HpyF3I	CTNAG	4 cut(s)	116, 305, 420, 534
HpySE526I	ACGT	3 cut(s)	101, 447, 618
Hsp92II	CATG	2 cut(s)	475, 700
KroI	GCCGGC	2 cut(s)	190, 275
KroNI	GCCGGC	2 cut(s)	192, 277
Kzo9I	GATC	8 cut(s)	8, 138, 159, 174, 285, 528, 584, 687
Lsp1109I	GCAGC	1 cut(s)	554
MaeII	ACGT	3 cut(s)	101, 447, 618
MaeIII	GTNAC	6 cut(s)	33, 102, 199, 409, 575, 614
MalI	GATC	8 cut(s)	10, 140, 161, 176, 287, 530, 586, 689
MboI	GATC	8 cut(s)	8, 138, 159, 174, 285, 528, 584, 687
MboII	GAAGA	4 cut(s)	64, 122, 184, 726
MflI	RGATCY	4 cut(s)	174, 285, 528, 687
MluCI	AATT	2 cut(s)	62, 362
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	202, 501
MreI	CGCCGGCG	1 cut(s)	190
MroNI	GCCGGC	2 cut(s)	190, 275
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	480, 746
MspI	CCGG	6 cut(s)	94, 191, 211, 276, 289, 499
MspR9I	CCNGG	4 cut(s)	94, 95, 212, 259
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	2 cut(s)	224, 401
MwoI	GCNNNNNNNGC	1 cut(s)	750
NaeI	GCCGGC	2 cut(s)	192, 277
NciI	CCSGG	3 cut(s)	94, 95, 212
NdeII	GATC	8 cut(s)	8, 138, 159, 174, 285, 528, 584, 687
NgoMIV	GCCGGC	2 cut(s)	190, 275
NlaIII	CATG	2 cut(s)	475, 700
NlaIV	GGNNCC	2 cut(s)	256, 287
NmuCI	GTSAC	5 cut(s)	33, 199, 409, 575, 614
PcsI	WCGNNNNNNNCGW	2 cut(s)	43, 276
PdiI	GCCGGC	2 cut(s)	192, 277
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	5 cut(s)	27, 55, 110, 557, 599
PkrI	GCNGC	2 cut(s)	403, 569
PleI	GAGTC	1 cut(s)	193
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	448
PshAI	GACNNNNGTC	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	257
PspCI	CACGTG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	256, 287
PspPI	GGNCC	2 cut(s)	255, 672
PsuI	RGATCY	4 cut(s)	174, 285, 528, 687
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	480, 746
SatI	GCNGC	2 cut(s)	402, 568
Sau3AI	GATC	8 cut(s)	8, 138, 159, 174, 285, 528, 584, 687
Sau96I	GGNCC	2 cut(s)	255, 672
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	4 cut(s)	94, 95, 212, 259
SgrAI	CRCCGGYG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	255
SmaI	CCCGGG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	62, 362
SsiI	CCGC	6 cut(s)	73, 401, 404, 434, 507, 517
StyD4I	CCNGG	4 cut(s)	92, 93, 210, 257
TaaI	ACNGT	2 cut(s)	581, 593
TaiI	ACGT	3 cut(s)	104, 450, 621
TaqI	TCGA	5 cut(s)	11, 162, 170, 270, 294
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	62, 362
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	5 cut(s)	27, 55, 110, 557, 599
Tru1I	TTAA	2 cut(s)	480, 746
Tru9I	TTAA	2 cut(s)	480, 746
TscAI	CASTG	1 cut(s)	584
TseFI	GTSAC	5 cut(s)	33, 199, 409, 575, 614
TseI	GCWGC	1 cut(s)	567
Tsp45I	GTSAC	5 cut(s)	33, 199, 409, 575, 614
TspDTI	ATGAA	2 cut(s)	470, 570
TspGWI	ACGGA	4 cut(s)	29, 39, 151, 428
TspMI	CCCGGG	1 cut(s)	93
TspRI	CASTG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	1 cut(s)	62
XmaI	CCCGGG	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.