Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011286

Physical Location & Seq

Genomic Coordinates Reverse (-)

12509672 .. 12511944

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G129000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTGTAGATCGACTGACTACCACGGATTGCAACCGAGGAAAGACCGGTTGAAGATTCGGGCTTTCTTTCTGCGGTTTTCGGGTCTGAATACCCGGGCACCGTTACCCGAATCCCTCACTCTTTCGTTTCTTCCTCGGATTAACGAGAACGAGTTAGAGATCGACGGGTCGAAGATCCGACCCGATACGCCGGCATTCCTCACTCTCTACCGGGTCGTGAATGCCAAGGTGAAGGACGGGGAAGTGATATTCGGATCCCGGGAGCGGGTCGAGGCCGGCGATGGGATCCGGTTCGAGGTTTATCTGAGGGAAGAGAAGGTGCTGAAGGGAACTTTCAGGAAAGATGAGGGGCAAGAGTGGAAATTGGAGTGTAAGTGCGCGCTGGAGAGCGAGAGCGTCGCGACGGAGATAGCTGAGGCGCAGGTCTGCGTGGCCGTGGAGGGACACGTGACGATGATTGAGAGGGTGAGAATGGTGGTTAAAAAAACAAAAAAGCACCGGAACTGCGGGTTTAAGCGGCTGGAGGAGATTCCGGAGGAGGGAGACGTGGATTATGAATCAGACGGCTGTTGTTGTAAATGTGGATCGGACGGTGGAGATTCGGAGGTGGGTGGTGAGGTGGCCAGAGAGGATATGGAGTTAGAGGTAGATATGGAAGGAGTGAGATGGGCCGTTGATGTGGGTATTTGGGTCATGTGTTTAGGCGTGGGCTACTTTGTTTCCAAAGCCTCTGCCAAAACATTAAGACGCAGAAGATTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.8

Weight (kDa)

5.86

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24110
fragaria_vesca	FvH4_5g10980
malus_domestica	MD06G1117900.v1.1 MD14G1125500.v1.1
prunus_persica	Prupe.5G129000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186241 RchiOBHm_Chr7g0186841
rosa_laevigata	RLG00000004811
rosa_multiflora	Rmu_sc0002609.1_g000002 Rmu_sc0012555.1_g000001 Rmu_ssc0000024.1_g000039
rosa_roxburghii	Rroxscaffold_3G00267780
rosa_rugosa	Rorug06G0472900 Rorug06G0477400
rosa_samantha	Rh7BG079800 Rh7CG079800 Rh7DG080300 Rh7DG085000
rosa_wichuraiana	Rw7G006680 Rw7G007300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	265
AccII	CGCG	2 cut(s)	380, 401
AccIII	TCCGGA	1 cut(s)	532
AciI	CCGC	4 cut(s)	73, 265, 507, 517
AclWI	GGATC	6 cut(s)	169, 249, 262, 280, 293, 592
AcoI	YGGCCR	2 cut(s)	432, 621
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	448
AfiI	CCNNNNNNNGG	5 cut(s)	264, 265, 282, 295, 539
AflIII	ACRYGT	1 cut(s)	445
AgeI	ACCGGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	52
AjiI	CACGTC	1 cut(s)	547
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	6 cut(s)	169, 249, 262, 280, 293, 592
Ama87I	CYCGRG	2 cut(s)	93, 258
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	4 cut(s)	273, 432, 621, 669
AsiGI	ACCGGT	1 cut(s)	45
AspLEI	GCGC	3 cut(s)	380, 382, 421
AspS9I	GGNCC	1 cut(s)	669
AsuC2I	CCSGG	5 cut(s)	94, 95, 212, 259, 260
AsuHPI	GGTGA	3 cut(s)	241, 478, 626
AvaI	CYCGRG	2 cut(s)	93, 258
BaeGI	GKGCMC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	623
BamHI	GGATCC	2 cut(s)	254, 285
BanI	GGYRCC	1 cut(s)	97
BbrPI	CACGTG	1 cut(s)	448
BbvCI	CCTCAGC	1 cut(s)	414
BccI	CCATC	2 cut(s)	275, 660
BceAI	ACGGC	3 cut(s)	419, 580, 656
BcnI	CCSGG	5 cut(s)	94, 95, 212, 259, 260
BcoDI	GTCTC	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	5 cut(s)	94, 95, 212, 259, 260
BmeT110I	CYCGRG	2 cut(s)	93, 258
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	669
BmiI	GGNNCC	3 cut(s)	99, 256, 287
BmrFI	CCNGG	5 cut(s)	94, 95, 212, 259, 260
BpmI	CTGGAG	2 cut(s)	404, 542
Bpu10I	CCTNAGC	1 cut(s)	414
BpuMI	CCSGG	5 cut(s)	94, 95, 212, 259, 260
BsaAI	YACGTR	1 cut(s)	448
BsaJI	CCNNGG	7 cut(s)	22, 35, 93, 134, 225, 258, 435
BsaWI	WCCGGW	4 cut(s)	45, 288, 498, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	5 cut(s)	264, 265, 282, 295, 539
Bse118I	RCCGGY	3 cut(s)	45, 190, 275
BseAI	TCCGGA	1 cut(s)	532
BseDI	CCNNGG	7 cut(s)	22, 35, 93, 134, 225, 258, 435
BseLI	CCNNNNNNNGG	5 cut(s)	264, 265, 282, 295, 539
BseMII	CTCAG	2 cut(s)	296, 405
BsePI	GCGCGC	1 cut(s)	378
BseRI	GAGGAG	2 cut(s)	539, 551
BseSI	GKGCMC	1 cut(s)	100
Bsh1236I	CGCG	2 cut(s)	380, 401
BshFI	GGCC	4 cut(s)	275, 434, 623, 671
BshNI	GGYRCC	1 cut(s)	97
BshTI	ACCGGT	1 cut(s)	45
BsiHKCI	CYCGRG	2 cut(s)	93, 258
BsiSI	CCGG	9 cut(s)	46, 94, 191, 211, 259, 276, 289, 499, 533
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	5 cut(s)	264, 265, 282, 295, 539
BsmAI	GTCTC	1 cut(s)	537
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	2 cut(s)	194, 226
BsnI	GGCC	4 cut(s)	275, 434, 623, 671
BsoBI	CYCGRG	2 cut(s)	93, 258
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	6 cut(s)	8, 159, 174, 254, 285, 584
Bsp68I	TCGCGA	1 cut(s)	401
BspACI	CCGC	4 cut(s)	73, 265, 507, 517
BspANI	GGCC	4 cut(s)	275, 434, 623, 671
BspCNI	CTCAG	2 cut(s)	297, 406
BspEI	TCCGGA	1 cut(s)	532
BspFNI	CGCG	2 cut(s)	380, 401
BspLI	GGNNCC	3 cut(s)	99, 256, 287
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	6 cut(s)	169, 249, 262, 280, 293, 592
BspT107I	GGYRCC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	265
BsrFI	RCCGGY	3 cut(s)	45, 190, 275
BssAI	RCCGGY	3 cut(s)	45, 190, 275
BssECI	CCNNGG	7 cut(s)	22, 35, 93, 134, 225, 258, 435
BssHII	GCGCGC	1 cut(s)	378
BssMI	GATC	6 cut(s)	8, 159, 174, 254, 285, 584
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	102, 593
Bst6I	CTCTTC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	3 cut(s)	192, 277, 380
BstDEI	CTNAG	2 cut(s)	305, 414
BstDSI	CCRYGG	2 cut(s)	22, 435
BstFNI	CGCG	2 cut(s)	380, 401
BstHHI	GCGC	3 cut(s)	380, 382, 421
BstKTI	GATC	6 cut(s)	11, 162, 177, 257, 288, 587
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	6 cut(s)	8, 159, 174, 254, 285, 584
BstSCI	CCNGG	5 cut(s)	92, 93, 210, 257, 258
BstSLI	GKGCMC	1 cut(s)	100
BstUI	CGCG	2 cut(s)	380, 401
BstX2I	RGATCY	3 cut(s)	174, 254, 285
BstYI	RGATCY	3 cut(s)	174, 254, 285
BsuRI	GGCC	4 cut(s)	275, 434, 623, 671
BtgI	CCRYGG	2 cut(s)	22, 435
BtgZI	GCGATG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	547
BtuMI	TCGCGA	1 cut(s)	401
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	192, 277, 380
CfoI	GCGC	3 cut(s)	380, 382, 421
Cfr10I	RCCGGY	3 cut(s)	45, 190, 275
Cfr13I	GGNCC	1 cut(s)	669
Cfr9I	CCCGGG	2 cut(s)	93, 258
CseI	GACGC	2 cut(s)	385, 756
CspAI	ACCGGT	1 cut(s)	45
CviAII	CATG	1 cut(s)	694
DdeI	CTNAG	2 cut(s)	305, 414
DpnI	GATC	6 cut(s)	10, 161, 176, 256, 287, 586
DpnII	GATC	6 cut(s)	8, 159, 174, 254, 285, 584
EaeI	YGGCCR	2 cut(s)	432, 621
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	448
Eco88I	CYCGRG	2 cut(s)	93, 258
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	1 cut(s)	697
FaiI	YATR	4 cut(s)	555, 635, 653, 695
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	693
FauI	CCCGC	2 cut(s)	258, 500
Fnu4HI	GCNGC	1 cut(s)	518
Fsp4HI	GCNGC	1 cut(s)	518
GlaI	GCGC	3 cut(s)	379, 381, 420
GluI	GCNGC	1 cut(s)	518
GsuI	CTGGAG	2 cut(s)	404, 542
HaeIII	GGCC	4 cut(s)	275, 434, 623, 671
HapII	CCGG	9 cut(s)	46, 94, 191, 211, 259, 276, 289, 499, 533
HgaI	GACGC	2 cut(s)	385, 756
HhaI	GCGC	3 cut(s)	380, 382, 421
Hin1II	CATG	1 cut(s)	697
Hin6I	GCGC	3 cut(s)	378, 380, 419
HinP1I	GCGC	3 cut(s)	378, 380, 419
HinfI	GANTC	5 cut(s)	55, 110, 529, 557, 599
HpaII	CCGG	9 cut(s)	46, 94, 191, 211, 259, 276, 289, 499, 533
HphI	GGTGA	3 cut(s)	241, 478, 626
Hpy188I	TCNGA	8 cut(s)	87, 138, 179, 254, 306, 562, 589, 604
Hpy188III	TCNNGA	4 cut(s)	217, 337, 400, 533
Hpy99I	CGWCG	3 cut(s)	167, 401, 406
HpyAV	CCTTC	4 cut(s)	226, 310, 319, 650
HpyCH4III	ACNGT	2 cut(s)	102, 593
HpyCH4IV	ACGT	2 cut(s)	447, 546
HpyCH4V	TGCA	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	305, 414
HpySE526I	ACGT	2 cut(s)	447, 546
Hsp92II	CATG	1 cut(s)	697
HspAI	GCGC	3 cut(s)	378, 380, 419
Kpn2I	TCCGGA	1 cut(s)	532
KroI	GCCGGC	2 cut(s)	190, 275
KroNI	GCCGGC	2 cut(s)	192, 277
Kzo9I	GATC	6 cut(s)	8, 159, 174, 254, 285, 584
LmnI	GCTCC	1 cut(s)	262
MaeII	ACGT	2 cut(s)	447, 546
MaeIII	GTNAC	2 cut(s)	102, 448
MalI	GATC	6 cut(s)	10, 161, 176, 256, 287, 586
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	6 cut(s)	8, 159, 174, 254, 285, 584
MboII	GAAGA	5 cut(s)	64, 122, 184, 323, 765
MflI	RGATCY	3 cut(s)	174, 254, 285
MhlI	GDGCHC	1 cut(s)	100
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	1 cut(s)	362
MluNI	TGGCCA	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	202
Mox20I	TGGCCA	1 cut(s)	623
MroI	TCCGGA	1 cut(s)	532
MroNI	GCCGGC	2 cut(s)	190, 275
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	5 cut(s)	141, 480, 513, 743, 763
Msp20I	TGGCCA	1 cut(s)	623
MspI	CCGG	9 cut(s)	46, 94, 191, 211, 259, 276, 289, 499, 533
MspR9I	CCNGG	5 cut(s)	94, 95, 212, 259, 260
Mva1269I	GAATGC	2 cut(s)	194, 226
MvnI	CGCG	2 cut(s)	380, 401
NaeI	GCCGGC	2 cut(s)	192, 277
NciI	CCSGG	5 cut(s)	94, 95, 212, 259, 260
NdeII	GATC	6 cut(s)	8, 159, 174, 254, 285, 584
NgoMIV	GCCGGC	2 cut(s)	190, 275
NlaIII	CATG	1 cut(s)	697
NlaIV	GGNNCC	3 cut(s)	99, 256, 287
NmuCI	GTSAC	1 cut(s)	448
NruI	TCGCGA	1 cut(s)	401
PauI	GCGCGC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	2 cut(s)	194, 226
PdiI	GCCGGC	2 cut(s)	192, 277
PfeI	GAWTC	5 cut(s)	55, 110, 529, 557, 599
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	519
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	448
PspCI	CACGTG	1 cut(s)	448
PspN4I	GGNNCC	3 cut(s)	99, 256, 287
PspPI	GGNCC	1 cut(s)	669
PsuI	RGATCY	3 cut(s)	174, 254, 285
PteI	GCGCGC	1 cut(s)	378
RruI	TCGCGA	1 cut(s)	401
SaqAI	TTAA	5 cut(s)	141, 480, 513, 743, 763
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	6 cut(s)	8, 159, 174, 254, 285, 584
Sau96I	GGNCC	1 cut(s)	669
ScrFI	CCNGG	5 cut(s)	94, 95, 212, 259, 260
SduI	GDGCHC	1 cut(s)	100
SmaI	CCCGGG	2 cut(s)	95, 260
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	4 cut(s)	73, 265, 507, 517
StyD4I	CCNGG	5 cut(s)	92, 93, 210, 257, 258
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	102, 593
TaiI	ACGT	2 cut(s)	450, 549
TaqI	TCGA	5 cut(s)	11, 162, 170, 270, 294
TasI	AATT	1 cut(s)	362
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	5 cut(s)	55, 110, 529, 557, 599
Tru1I	TTAA	5 cut(s)	141, 480, 513, 743, 763
Tru9I	TTAA	5 cut(s)	141, 480, 513, 743, 763
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	2 cut(s)	39, 419
TspMI	CCCGGG	2 cut(s)	93, 258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmaI	CCCGGG	2 cut(s)	93, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.