Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011286

Physical Location & Seq

Genomic Coordinates Forward (+)

6208833 .. 6209869

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTGTAGGTCGACGGACTACCCGGGCTTCCAGGCCAAGAGAGAAGCCCTAAAGATTCAAGCCTTCTTCCTCCGCTTCAAGGGTTTGGATTCTCGCAAGCCCTTGCCGGAGTCGCTCACGCTTTCGTATCTCCCGAGGATCAACGGCACCGCGCTCGAGGTCGGCGGGTCGAAGATCCGACCCGACTCGGCGGCGTTCGTGACGCTCCACCGGGCGGTGAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCGGTTCGGGCCGGGGACGGGGTCCGGTTCGAGGCGTATTTGAGGGAGGAGAAGATGCTGAAGGGGATATTCAGGAAAGACGAGGGGCAGGATTGGAAATTGGAATGCAAGTGTGTGCTGGAGAGCGAGAGTGTCGGGGCGGAGATTACGGAGGCGGAGGTATGCGTGGCCGTCGAGGGACACGTGGCGATGAGCGAGAGGGTGAAAATGGTGGTGAAAAGGCGGGGAAAGTGTGGGTTTCATCCGCTGGAGGAGATTCCGGAGGTGGACGAGGAATCGGACGGCGAGTGCTTTTGTATATGTGGGGAAATGGACGGTGGAGATTTGGAGGAGGATGGTGACGTGGAGGAGGAGTTGGAGATGGATGTGGAGGGAGTGAGATGGGCTGTGGATGTGGGCTTTTGGGTCATGTGTTTGGGTGTGGGCTACTTGGTTTCCAAGGCCTCGTCCAAAAGTTTGAGACGCAGGAGATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.63

Weight (kDa)

5.31

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24110
fragaria_vesca	FvH4_5g10980
malus_domestica	MD06G1117900.v1.1 MD14G1125500.v1.1
prunus_persica	Prupe.5G129000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186241 RchiOBHm_Chr7g0186841
rosa_laevigata	RLG00000004811
rosa_multiflora	Rmu_sc0002609.1_g000002 Rmu_sc0012555.1_g000001 Rmu_ssc0000024.1_g000039
rosa_roxburghii	Rroxscaffold_3G00267780
rosa_rugosa	Rorug06G0472900 Rorug06G0477400
rosa_samantha	Rh7BG079800 Rh7CG079800 Rh7DG080300 Rh7DG085000
rosa_wichuraiana	Rw7G006680 Rw7G007300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	2 cut(s)	152, 259
AccIII	TCCGGA	1 cut(s)	523
AclWI	GGATC	2 cut(s)	146, 169
AcoI	YGGCCR	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	448
AfiI	CCNNNNNNNGG	4 cut(s)	79, 214, 282, 295
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	59, 79
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	2 cut(s)	146, 169
Ama87I	CYCGRG	3 cut(s)	22, 133, 155
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	4 cut(s)	33, 273, 432, 705
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	273, 286
AsuC2I	CCSGG	4 cut(s)	23, 24, 212, 277
AsuHPI	GGTGA	5 cut(s)	229, 241, 478, 490, 614
AvaI	CYCGRG	3 cut(s)	22, 133, 155
AvaII	GGWCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	448
BccI	CCATC	3 cut(s)	593, 619, 639
BceAI	ACGGC	3 cut(s)	160, 419, 562
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	4 cut(s)	23, 24, 212, 277
BcoDI	GTCTC	1 cut(s)	718
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	5 cut(s)	23, 24, 32, 212, 277
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	3 cut(s)	22, 133, 155
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	273, 286
BmiI	GGNNCC	2 cut(s)	148, 287
BmrFI	CCNGG	5 cut(s)	23, 24, 32, 212, 277
BmsI	GCATC	1 cut(s)	309
BpmI	CTGGAG	2 cut(s)	404, 533
BpuMI	CCSGG	4 cut(s)	23, 24, 212, 277
BsaAI	YACGTR	1 cut(s)	448
BsaJI	CCNNGG	4 cut(s)	22, 134, 276, 702
BsaWI	WCCGGW	2 cut(s)	288, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 214, 282, 295
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	22, 134, 276, 702
BseGI	GGATG	4 cut(s)	505, 604, 634, 661
BseLI	CCNNNNNNNGG	4 cut(s)	79, 214, 282, 295
BseRI	GAGGAG	5 cut(s)	326, 530, 608, 626, 629
Bsh1236I	CGCG	2 cut(s)	152, 259
BshFI	GGCC	4 cut(s)	35, 275, 434, 707
BshNI	GGYRCC	1 cut(s)	146
BsiHKCI	CYCGRG	3 cut(s)	22, 133, 155
BsiSI	CCGG	6 cut(s)	23, 107, 211, 276, 289, 524
BslFI	GGGAC	2 cut(s)	293, 456
BslI	CCNNNNNNNGG	4 cut(s)	79, 214, 282, 295
BsmAI	GTCTC	1 cut(s)	718
BsmBI	CGTCTC	1 cut(s)	718
BsmFI	GGGAC	2 cut(s)	293, 456
BsmI	GAATGC	2 cut(s)	226, 374
BsnI	GGCC	4 cut(s)	35, 275, 434, 707
BsoBI	CYCGRG	3 cut(s)	22, 133, 155
Bsp13I	TCCGGA	1 cut(s)	523
Bsp143I	GATC	2 cut(s)	138, 174
BspANI	GGCC	4 cut(s)	35, 275, 434, 707
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	2 cut(s)	152, 259
BspLI	GGNNCC	2 cut(s)	148, 287
BspPI	GGATC	2 cut(s)	146, 169
BspT107I	GGYRCC	1 cut(s)	146
BssECI	CCNNGG	4 cut(s)	22, 134, 276, 702
BssMI	GATC	2 cut(s)	138, 174
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	98
BstF5I	GGATG	4 cut(s)	505, 604, 634, 661
BstFNI	CGCG	2 cut(s)	152, 259
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	141, 177
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	2 cut(s)	138, 174
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 221, 272
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	5 cut(s)	21, 22, 30, 210, 275
BstUI	CGCG	2 cut(s)	152, 259
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	4 cut(s)	35, 275, 434, 707
BtgZI	GCGATG	1 cut(s)	467
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	4 cut(s)	505, 604, 634, 661
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	273, 286
Cfr9I	CCCGGG	1 cut(s)	22
CseI	GACGC	2 cut(s)	211, 735
CviAII	CATG	1 cut(s)	673
DpnI	GATC	2 cut(s)	140, 176
DpnII	GATC	2 cut(s)	138, 174
EaeI	YGGCCR	1 cut(s)	432
EciI	GGCGGA	2 cut(s)	419, 434
Eco130I	CCWWGG	1 cut(s)	702
Eco147I	AGGCCT	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	448
Eco88I	CYCGRG	3 cut(s)	22, 133, 155
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	702
Esp3I	CGTCTC	1 cut(s)	718
FaeI	CATG	1 cut(s)	676
FaiI	YATR	4 cut(s)	427, 563, 565, 674
FaqI	GGGAC	2 cut(s)	293, 456
FatI	CATG	1 cut(s)	672
FauI	CCCGC	3 cut(s)	158, 252, 480
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	4 cut(s)	492, 611, 641, 668
Fsp4HI	GCNGC	1 cut(s)	192
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	2 cut(s)	404, 533
HaeIII	GGCC	4 cut(s)	35, 275, 434, 707
HapII	CCGG	6 cut(s)	23, 107, 211, 276, 289, 524
HgaI	GACGC	2 cut(s)	211, 735
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	676
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	6 cut(s)	55, 89, 110, 185, 520, 539
HpaII	CCGG	6 cut(s)	23, 107, 211, 276, 289, 524
HphI	GGTGA	5 cut(s)	229, 241, 478, 490, 614
Hpy166II	GTNNAC	2 cut(s)	12, 532
Hpy188I	TCNGA	2 cut(s)	179, 544
Hpy188III	TCNNGA	4 cut(s)	133, 199, 337, 524
Hpy8I	GTNNAC	2 cut(s)	12, 532
Hpy99I	CGWCG	2 cut(s)	16, 440
HpyAV	CCTTC	4 cut(s)	73, 220, 229, 319
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	2 cut(s)	447, 606
HpyCH4V	TGCA	1 cut(s)	372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 221, 272
HpySE526I	ACGT	2 cut(s)	447, 606
Hsp92II	CATG	1 cut(s)	676
HspAI	GCGC	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	138, 174
LmnI	GCTCC	1 cut(s)	210
LweI	GCATC	1 cut(s)	309
MaeII	ACGT	2 cut(s)	447, 606
MaeIII	GTNAC	2 cut(s)	199, 602
MalI	GATC	2 cut(s)	140, 176
MboI	GATC	2 cut(s)	138, 174
MboII	GAAGA	3 cut(s)	58, 184, 328
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	1 cut(s)	362
MlyI	GAGTC	2 cut(s)	119, 179
MmeI	TCCRAC	2 cut(s)	202, 600
MroI	TCCGGA	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	6 cut(s)	23, 107, 211, 276, 289, 524
MspR9I	CCNGG	5 cut(s)	23, 24, 32, 212, 277
Mva1269I	GAATGC	2 cut(s)	226, 374
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	2 cut(s)	152, 259
MwoI	GCNNNNNNNGC	3 cut(s)	112, 221, 272
NciI	CCSGG	4 cut(s)	23, 24, 212, 277
NdeII	GATC	2 cut(s)	138, 174
NlaIII	CATG	1 cut(s)	676
NlaIV	GGNNCC	2 cut(s)	148, 287
NmeAIII	GCCGAG	1 cut(s)	167
NmuCI	GTSAC	2 cut(s)	199, 602
PaeR7I	CTCGAG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 444
PctI	GAATGC	2 cut(s)	226, 374
PfeI	GAWTC	4 cut(s)	55, 89, 520, 539
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	118, 179
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
PpsI	GAGTC	2 cut(s)	118, 179
Ppu21I	YACGTR	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	30
PspCI	CACGTG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	148, 287
PspPI	GGNCC	2 cut(s)	273, 286
PspXI	VCTCGAGB	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	284
SalI	GTCGAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	138, 174
Sau96I	GGNCC	2 cut(s)	273, 286
SchI	GAGTC	2 cut(s)	119, 179
ScrFI	CCNGG	5 cut(s)	23, 24, 32, 212, 277
SetI	ASST	7 cut(s)	11, 162, 231, 426, 450, 531, 609
SfaNI	GCATC	1 cut(s)	309
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	155
SmaI	CCCGGG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	362
SseBI	AGGCCT	1 cut(s)	707
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	5 cut(s)	21, 22, 30, 210, 275
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	2 cut(s)	450, 609
TaqI	TCGA	5 cut(s)	11, 156, 170, 294, 438
TasI	AATT	1 cut(s)	362
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	4 cut(s)	55, 89, 520, 539
TseFI	GTSAC	2 cut(s)	199, 602
Tsp45I	GTSAC	2 cut(s)	199, 602
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	2 cut(s)	29, 428
TspMI	CCCGGG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	155
XmaI	CCCGGG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.