Rw7G006680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011286
Physical Location & Seq
Forward (+)
5714361 .. 5715104
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006680.1

Sequence Viewer

Length: 744 bp
ATGTGTAGGTCGACGGAGTACCCCGGCTTTCGGGCCAGAAGAGAAGCCCTAAAGATTCGAGCTTTCTTCATACGGTTTTCGGGTTTGGATTCTCATAAGCCGTTACCGGAATCGCTCACGCTTTCGTATCTTCCAAGAATCAACGGCACCGCGCTCGAGATCGACGGGTCCAAGATCCGACCCGACTCGCCGGCTTTCGTGACGCTCCACCGCGCGGTGAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCGGTTCGGGCCGGCGACGGGGTCCAGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGTTGAAGGGGGTTTTCAGGAAAGACGTGGGGCAGGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGGAGGAGGTCACGGCGGCGGAGGTGTGCGTGGCCGTGGAGGGACACGTGGCGATGAGCGAGAGGGTGGCGATGATTGTGAAAAGGCGGGGAAAGTGTGGGTTTCATCCGCTGGAGGAGATCCCGGAGGTGGACGAGGAATCGGACGGCGGGTGTTGCTGCACTTGCGGGGAAATGGACGGTGGAGATTTGGAGGAGGATGGTGACGTGGAGGAGGAGTTGGAGATGGATATGGAGGGAGTGAGATGGGCTGTGGATGTGGGCTTTTGGGTCATGTGTTTGGGTGTGGGCTACTTGGTTTCTAAGGCCTCATCCAAAAGCTTAAGACGCAGGAGATTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.52

Weight (kDa)

5.28

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 11
AccII CGCG 4 cut(s) 152, 213, 215, 259
AclWI GGATC 2 cut(s) 169, 514
AcoI YGGCCR 1 cut(s) 432
AcvI CACGTG 1 cut(s) 448
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 5 cut(s) 30, 214, 282, 295, 529
AflII CTTAAG 1 cut(s) 721
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 1 cut(s) 325
AjiI CACGTC 2 cut(s) 346, 607
AluBI AGCT 2 cut(s) 62, 720
AluI AGCT 2 cut(s) 62, 720
AlwI GGATC 2 cut(s) 169, 514
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 4 cut(s) 33, 273, 432, 705
ApeKI GCWGC 1 cut(s) 558
AspLEI GCGC 2 cut(s) 154, 215
AspS9I GGNCC 4 cut(s) 33, 168, 273, 286
AsuC2I CCSGG 2 cut(s) 24, 524
AsuHPI GGTGA 3 cut(s) 229, 241, 614
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 2 cut(s) 168, 286
BanI GGYRCC 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 448
BbvI GCAGC 1 cut(s) 545
BccI CCATC 3 cut(s) 593, 619, 639
BceAI ACGGC 5 cut(s) 85, 160, 419, 429, 562
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BcnI CCSGG 2 cut(s) 24, 524
BfrI CTTAAG 1 cut(s) 721
BisI GCNGC 2 cut(s) 417, 559
BlsI GCNGC 2 cut(s) 418, 560
Bme1390I CCNGG 2 cut(s) 24, 524
Bme18I GGWCC 2 cut(s) 168, 286
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 2 cut(s) 346, 607
BmgT120I GGNCC 4 cut(s) 33, 168, 273, 286
BmiI GGNNCC 3 cut(s) 148, 169, 287
BmrFI CCNGG 2 cut(s) 24, 524
BpmI CTGGAG 2 cut(s) 404, 533
BpuMI CCSGG 2 cut(s) 24, 524
BsaAI YACGTR 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 22, 435
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 6 cut(s) 305, 335, 359, 389, 602, 632
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 214, 282, 295, 529
Bse118I RCCGGY 2 cut(s) 190, 275
Bse1I ACTGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 22, 435
BseGI GGATG 4 cut(s) 505, 604, 661, 710
BseLI CCNNNNNNNGG 5 cut(s) 30, 214, 282, 295, 529
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 6 cut(s) 326, 419, 530, 608, 626, 629
BseXI GCAGC 1 cut(s) 545
BsgI GTGCAG 1 cut(s) 544
Bsh1236I CGCG 4 cut(s) 152, 213, 215, 259
BshFI GGCC 4 cut(s) 35, 275, 434, 707
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 5 cut(s) 24, 107, 191, 276, 524
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 5 cut(s) 30, 214, 282, 295, 529
BsmFI GGGAC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 4 cut(s) 35, 275, 434, 707
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 3 cut(s) 159, 174, 519
BspANI GGCC 4 cut(s) 35, 275, 434, 707
BspFNI CGCG 4 cut(s) 152, 213, 215, 259
BspLI GGNNCC 3 cut(s) 148, 169, 287
BspPI GGATC 2 cut(s) 169, 514
BspT107I GGYRCC 1 cut(s) 146
BspTI CTTAAG 1 cut(s) 721
BsrFI RCCGGY 2 cut(s) 190, 275
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 2 cut(s) 190, 275
BssECI CCNNGG 2 cut(s) 22, 435
BssMI GATC 3 cut(s) 159, 174, 519
Bst4CI ACNGT 2 cut(s) 75, 581
Bst6I CTCTTC 1 cut(s) 34
BstAFI CTTAAG 1 cut(s) 721
BstBAI YACGTR 1 cut(s) 448
BstC8I GCNNGC 3 cut(s) 192, 277, 380
BstDEI CTNAG 1 cut(s) 702
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 4 cut(s) 505, 604, 661, 710
BstFNI CGCG 4 cut(s) 152, 213, 215, 259
BstHHI GCGC 2 cut(s) 154, 215
BstKTI GATC 3 cut(s) 162, 177, 522
BstMBI GATC 3 cut(s) 159, 174, 519
BstMWI GCNNNNNNNGC 5 cut(s) 221, 272, 555, 564, 726
BstSCI CCNGG 2 cut(s) 22, 522
BstUI CGCG 4 cut(s) 152, 213, 215, 259
BstV1I GCAGC 1 cut(s) 545
BstX2I RGATCY 2 cut(s) 174, 519
BstYI RGATCY 2 cut(s) 174, 519
BsuRI GGCC 4 cut(s) 35, 275, 434, 707
BtgI CCRYGG 1 cut(s) 435
BtgZI GCGATG 2 cut(s) 467, 485
BtrI CACGTC 2 cut(s) 346, 607
BtsCI GGATG 4 cut(s) 505, 604, 661, 710
Cac8I GCNNGC 3 cut(s) 192, 277, 380
CfoI GCGC 2 cut(s) 154, 215
Cfr10I RCCGGY 2 cut(s) 190, 275
Cfr13I GGNCC 4 cut(s) 33, 168, 273, 286
CseI GACGC 2 cut(s) 211, 735
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 673
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 702
DpnI GATC 3 cut(s) 161, 176, 521
DpnII GATC 3 cut(s) 159, 174, 519
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 434
Eco147I AGGCCT 1 cut(s) 707
Eco47I GGWCC 2 cut(s) 168, 286
Eco72I CACGTG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 155
FaeI CATG 1 cut(s) 676
FaiI YATR 4 cut(s) 71, 96, 632, 674
FaqI GGGAC 1 cut(s) 456
FatI CATG 1 cut(s) 672
FauI CCCGC 4 cut(s) 252, 480, 542, 560
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 417, 559
FokI GGATG 4 cut(s) 492, 611, 668, 697
Fsp4HI GCNGC 2 cut(s) 417, 559
GlaI GCGC 2 cut(s) 153, 214
GluI GCNGC 2 cut(s) 417, 559
GsuI CTGGAG 2 cut(s) 404, 533
HaeIII GGCC 4 cut(s) 35, 275, 434, 707
HapII CCGG 5 cut(s) 24, 107, 191, 276, 524
HgaI GACGC 2 cut(s) 211, 735
HhaI GCGC 2 cut(s) 154, 215
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 2 cut(s) 152, 213
HinP1I GCGC 2 cut(s) 152, 213
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 718
HinfI GANTC 6 cut(s) 55, 89, 110, 138, 185, 539
HpaII CCGG 5 cut(s) 24, 107, 191, 276, 524
HphI GGTGA 3 cut(s) 229, 241, 614
Hpy166II GTNNAC 2 cut(s) 12, 532
Hpy188I TCNGA 2 cut(s) 179, 544
Hpy188III TCNNGA 3 cut(s) 157, 199, 337
Hpy8I GTNNAC 2 cut(s) 12, 532
Hpy99I CGWCG 3 cut(s) 16, 167, 284
HpyAV CCTTC 4 cut(s) 220, 229, 310, 319
HpyCH4III ACNGT 2 cut(s) 75, 581
HpyCH4IV ACGT 3 cut(s) 345, 447, 606
HpyCH4V TGCA 2 cut(s) 372, 561
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 272, 555, 564, 726
HpyF3I CTNAG 1 cut(s) 702
HpySE526I ACGT 3 cut(s) 345, 447, 606
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 2 cut(s) 152, 213
KroI GCCGGC 2 cut(s) 190, 275
KroNI GCCGGC 2 cut(s) 192, 277
Kzo9I GATC 3 cut(s) 159, 174, 519
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 1 cut(s) 545
MaeII ACGT 3 cut(s) 345, 447, 606
MaeIII GTNAC 4 cut(s) 102, 199, 409, 602
MalI GATC 3 cut(s) 161, 176, 521
MboI GATC 3 cut(s) 159, 174, 519
MboII GAAGA 3 cut(s) 51, 58, 122
MflI RGATCY 2 cut(s) 174, 519
MluCI AATT 1 cut(s) 362
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 202, 600
MroNI GCCGGC 2 cut(s) 190, 275
MseI TTAA 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 511
MspCI CTTAAG 1 cut(s) 721
MspI CCGG 5 cut(s) 24, 107, 191, 276, 524
MspR9I CCNGG 2 cut(s) 24, 524
Mva1269I GAATGC 1 cut(s) 226
MvnI CGCG 4 cut(s) 152, 213, 215, 259
MwoI GCNNNNNNNGC 5 cut(s) 221, 272, 555, 564, 726
NaeI GCCGGC 2 cut(s) 192, 277
NciI CCSGG 2 cut(s) 24, 524
NdeII GATC 3 cut(s) 159, 174, 519
NgoMIV GCCGGC 2 cut(s) 190, 275
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 3 cut(s) 148, 169, 287
NmuCI GTSAC 3 cut(s) 199, 409, 602
PaeR7I CTCGAG 1 cut(s) 155
PceI AGGCCT 1 cut(s) 707
PctI GAATGC 1 cut(s) 226
PdiI GCCGGC 2 cut(s) 192, 277
PfeI GAWTC 5 cut(s) 55, 89, 110, 138, 539
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 2 cut(s) 418, 560
PleI GAGTC 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
PpsI GAGTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 448
PspCI CACGTG 1 cut(s) 448
PspN4I GGNNCC 3 cut(s) 148, 169, 287
PspPI GGNCC 4 cut(s) 33, 168, 273, 286
PsuI RGATCY 2 cut(s) 174, 519
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 2 cut(s) 417, 559
Sau3AI GATC 3 cut(s) 159, 174, 519
Sau96I GGNCC 4 cut(s) 33, 168, 273, 286
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 24, 524
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 2 cut(s) 168, 286
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 155, 721
SmoI CTYRAG 2 cut(s) 155, 721
Sse9I AATT 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 707
StuI AGGCCT 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 22, 522
TaaI ACNGT 2 cut(s) 75, 581
TaiI ACGT 3 cut(s) 348, 450, 609
TaqI TCGA 5 cut(s) 11, 58, 156, 162, 294
TasI AATT 1 cut(s) 362
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 5 cut(s) 55, 89, 110, 138, 539
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TseFI GTSAC 3 cut(s) 199, 409, 602
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 3 cut(s) 199, 409, 602
TspDTI ATGAA 2 cut(s) 58, 494
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 721
VpaK11BI GGWCC 2 cut(s) 168, 286
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.