Rmu_sc0012555.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012555.1
OG0011286
Physical Location & Seq
Forward (+)
1 .. 1386
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012555.1_g000001.1.cds

Sequence Viewer

Length: 732 bp
ccgggaaagtgtgggtttcatccgctggaggagatcccggaggtggacgaggaatcggacggcgggtgttgctgcacttgctggaaaatggacggtggagatttggaggaggatggtgacgtggaggaggaattggacattgatgtggatgtggatgtggagggagtgagatgggctgtggatgtgggcttttgggtcatgtgtttgggcgtgggctacttgttgcaacttgcaaggcatactggcatcgttatgataatagacaacatcaaaccaacgaaaagttttgatccatttttcaatgcgatgttggctcgaagttttcatctgatcgagtcttgcttgggtcgaagcttctatatggctggggaagttgtggatccgattcaagggactacgtgggctcgtgttctggcaacggcggcatcacgggatgcagccggtgctctaggggcacaggggatcttttctttttggatcgggtctagtgtcgtttgggttacttgttgtcctcgtgatggtggtgctgtggtgtggcggtggctggcttgcaacgtgcggcgtcctcaacaagggaagacagaatcgcaacagggctgggtcagcttgggcttcgggctctgctcttctttgggccatcaggttgggaggatcgagccttctagcgcctccggcgtagtaccaaagggggaccccgctatgtctacgatgtattcaatgtcaaatgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.31

Weight (kDa)

4.53

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 704
AciI CCGC 6 cut(s) 23, 63, 422, 538, 559, 696
AclWI GGATC 7 cut(s) 28, 284, 374, 387, 470, 485, 659
AcyI GRCGYC 1 cut(s) 562
AfaI GTAC 1 cut(s) 681
AfiI CCNNNNNNNGG 4 cut(s) 43, 389, 518, 572
AgsI TTSAA 3 cut(s) 301, 389, 717
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 2 cut(s) 354, 606
AluI AGCT 2 cut(s) 354, 606
Alw21I GWGCWC 1 cut(s) 448
AlwI GGATC 7 cut(s) 28, 284, 374, 387, 470, 485, 659
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 2 cut(s) 72, 437
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 2 cut(s) 634, 691
AsuC2I CCSGG 2 cut(s) 3, 38
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 691
BaeGI GKGCMC 1 cut(s) 457
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 2 cut(s) 406, 621
BauI CACGAG 2 cut(s) 405, 513
BbsI GAAGAC 1 cut(s) 584
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 59, 449
BccI CCATC 4 cut(s) 107, 165, 512, 645
BceAI ACGGC 2 cut(s) 76, 435
BcnI CCSGG 2 cut(s) 3, 38
BfaI CTAG 3 cut(s) 449, 486, 663
BfoI RGCGCY 1 cut(s) 669
BisI GCNGC 4 cut(s) 73, 423, 438, 560
BlsI GCNGC 4 cut(s) 74, 424, 439, 561
Bme1390I CCNGG 2 cut(s) 3, 38
Bme18I GGWCC 1 cut(s) 691
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 634, 691
BmiI GGNNCC 3 cut(s) 381, 692, 693
BmrFI CCNGG 2 cut(s) 3, 38
BmsI GCATC 3 cut(s) 255, 424, 434
BpiI GAAGAC 1 cut(s) 584
BpmI CTGGAG 1 cut(s) 47
BpuMI CCSGG 2 cut(s) 3, 38
BsaAI YACGTR 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 562
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 389, 518, 572
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 247
BseGI GGATG 6 cut(s) 19, 118, 154, 160, 187, 439
BseLI CCNNNNNNNGG 4 cut(s) 43, 389, 518, 572
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 3 cut(s) 44, 122, 140
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 2 cut(s) 59, 449
BseYI CCCAGC 2 cut(s) 365, 597
BsgI GTGCAG 1 cut(s) 58
BshFI GGCC 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 4 cut(s) 2, 38, 441, 672
BslFI GGGAC 2 cut(s) 406, 704
BslI CCNNNNNNNGG 4 cut(s) 43, 389, 518, 572
BsmFI GGGAC 2 cut(s) 406, 704
BsnI GGCC 1 cut(s) 636
Bsp1286I GDGCHC 4 cut(s) 406, 448, 457, 621
Bsp143I GATC 7 cut(s) 33, 289, 330, 379, 462, 477, 651
BspACI CCGC 6 cut(s) 23, 63, 422, 538, 559, 696
BspANI GGCC 1 cut(s) 636
BspLI GGNNCC 3 cut(s) 381, 692, 693
BspPI GGATC 7 cut(s) 28, 284, 374, 387, 470, 485, 659
BspQI GCTCTTC 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 440
BssMI GATC 7 cut(s) 33, 289, 330, 379, 462, 477, 651
BssNI GRCGYC 1 cut(s) 562
BssSI CACGAG 2 cut(s) 405, 513
Bst2BI CACGAG 2 cut(s) 405, 513
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 631
BstACI GRCGYC 1 cut(s) 562
BstAPI GCANNNNNTGC 1 cut(s) 443
BstBAI YACGTR 1 cut(s) 399
BstC8I GCNNGC 2 cut(s) 546, 550
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 6 cut(s) 19, 118, 154, 160, 187, 439
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 7 cut(s) 36, 292, 333, 382, 465, 480, 654
BstMBI GATC 7 cut(s) 33, 289, 330, 379, 462, 477, 651
BstMWI GCNNNNNNNGC 8 cut(s) 69, 78, 311, 422, 443, 452, 603, 672
BstSCI CCNGG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 59, 449
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 3 cut(s) 33, 379, 462
BstXI CCANNNNNNTGG 1 cut(s) 644
BstYI RGATCY 3 cut(s) 33, 379, 462
BsuRI GGCC 1 cut(s) 636
BtgZI GCGATG 1 cut(s) 320
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 6 cut(s) 19, 118, 154, 160, 187, 439
Cac8I GCNNGC 2 cut(s) 546, 550
CfoI GCGC 1 cut(s) 668
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 634, 691
CseI GACGC 1 cut(s) 551
Csp6I GTAC 1 cut(s) 680
CviAII CATG 1 cut(s) 199
CviQI GTAC 1 cut(s) 680
DpnI GATC 7 cut(s) 35, 291, 332, 381, 464, 479, 653
DpnII GATC 7 cut(s) 33, 289, 330, 379, 462, 477, 651
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
Eco24I GRGCYC 2 cut(s) 406, 621
Eco47I GGWCC 1 cut(s) 691
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 691
EcoT38I GRGCYC 2 cut(s) 406, 621
FaeI CATG 1 cut(s) 202
FaiI YATR 6 cut(s) 200, 240, 254, 360, 362, 701
FaqI GGGAC 2 cut(s) 406, 704
FatI CATG 1 cut(s) 198
FauI CCCGC 2 cut(s) 56, 703
FblI GTMKAC 1 cut(s) 704
Fnu4HI GCNGC 4 cut(s) 73, 423, 438, 560
FokI GGATG 6 cut(s) 6, 125, 161, 167, 194, 446
FriOI GRGCYC 2 cut(s) 406, 621
Fsp4HI GCNGC 4 cut(s) 73, 423, 438, 560
FspBI CTAG 3 cut(s) 449, 486, 663
GlaI GCGC 1 cut(s) 667
GluI GCNGC 4 cut(s) 73, 423, 438, 560
GsaI CCCAGC 2 cut(s) 369, 601
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 1 cut(s) 636
HapII CCGG 4 cut(s) 2, 38, 441, 672
HgaI GACGC 1 cut(s) 551
HhaI GCGC 1 cut(s) 668
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 4 cut(s) 53, 335, 385, 584
HpaII CCGG 4 cut(s) 2, 38, 441, 672
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 46, 705
Hpy188I TCNGA 3 cut(s) 58, 330, 384
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 2 cut(s) 46, 705
HpyAV CCTTC 1 cut(s) 669
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 3 cut(s) 120, 398, 555
HpyCH4V TGCA 5 cut(s) 75, 226, 233, 437, 552
HpyF10VI GCNNNNNNNGC 8 cut(s) 69, 78, 311, 422, 443, 452, 603, 672
HpySE526I ACGT 3 cut(s) 120, 398, 555
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 666
KflI GGGWCCC 1 cut(s) 691
Kzo9I GATC 7 cut(s) 33, 289, 330, 379, 462, 477, 651
LguI GCTCTTC 1 cut(s) 631
Lsp1109I GCAGC 2 cut(s) 59, 449
LweI GCATC 3 cut(s) 255, 424, 434
MaeI CTAG 3 cut(s) 449, 486, 663
MaeII ACGT 3 cut(s) 120, 398, 555
MaeIII GTNAC 2 cut(s) 116, 499
MalI GATC 7 cut(s) 35, 291, 332, 381, 464, 479, 653
MboI GATC 7 cut(s) 33, 289, 330, 379, 462, 477, 651
MboII GAAGA 2 cut(s) 589, 618
MflI RGATCY 3 cut(s) 33, 379, 462
MhlI GDGCHC 4 cut(s) 406, 448, 457, 621
MluCI AATT 1 cut(s) 131
MlyI GAGTC 1 cut(s) 344
MslI CAYNNNNRTG 2 cut(s) 143, 251
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 4 cut(s) 2, 38, 441, 672
MspR9I CCNGG 2 cut(s) 3, 38
MwoI GCNNNNNNNGC 8 cut(s) 69, 78, 311, 422, 443, 452, 603, 672
NciI CCSGG 2 cut(s) 3, 38
NdeII GATC 7 cut(s) 33, 289, 330, 379, 462, 477, 651
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 3 cut(s) 381, 692, 693
NmuCI GTSAC 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 631
PfeI GAWTC 3 cut(s) 53, 385, 584
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 4 cut(s) 74, 424, 439, 561
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Ppu21I YACGTR 1 cut(s) 399
PpuMI RGGWCCY 1 cut(s) 691
Psp5II RGGWCCY 1 cut(s) 691
PspFI CCCAGC 2 cut(s) 365, 597
PspN4I GGNNCC 3 cut(s) 381, 692, 693
PspPI GGNCC 2 cut(s) 634, 691
PspPPI RGGWCCY 1 cut(s) 691
PsuI RGATCY 3 cut(s) 33, 379, 462
RsaI GTAC 1 cut(s) 681
RsaNI GTAC 1 cut(s) 680
RseI CAYNNNNRTG 2 cut(s) 143, 251
SapI GCTCTTC 1 cut(s) 631
SatI GCNGC 4 cut(s) 73, 423, 438, 560
Sau3AI GATC 7 cut(s) 33, 289, 330, 379, 462, 477, 651
Sau96I GGNCC 2 cut(s) 634, 691
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 3, 38
SduI GDGCHC 4 cut(s) 406, 448, 457, 621
SetI ASST 7 cut(s) 45, 123, 356, 401, 558, 608, 645
SfaNI GCATC 3 cut(s) 255, 424, 434
SinI GGWCC 1 cut(s) 691
SmiMI CAYNNNNRTG 2 cut(s) 143, 251
Sse9I AATT 1 cut(s) 131
SsiI CCGC 6 cut(s) 23, 63, 422, 538, 559, 696
SspMI CTAG 3 cut(s) 449, 486, 663
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 3 cut(s) 123, 401, 558
TaqI TCGA 4 cut(s) 316, 333, 349, 654
TasI AATT 1 cut(s) 131
TauI GCSGC 2 cut(s) 425, 562
TfiI GAWTC 3 cut(s) 53, 385, 584
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 72, 437
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 8, 314
VpaK11BI GGWCC 1 cut(s) 691
XagI CCTNNNNNAGG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 704
XspI CTAG 3 cut(s) 449, 486, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.