Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011286

Physical Location & Seq

Genomic Coordinates Forward (+)

5778582 .. 5779305

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG079800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTGTAGGTCGACGGACTACCCTGGCTTTCAGGCCAGGAGAGAAGCCCTAAAGATTCAAGCTTTCTTTATACGGTTTTCGGGTTTGGATTTTCATAAGCCGTTACCGGAATCGCTCACTCTTTCGTATCTTCCGAGGATCAACGGCACCGCGCTCGAGATCGACGGGTCCAAGATCCGACCCGACTTGCCGGCGTTCGTGACGCTCCACCGCGCGGTGAATGCGAAGGTGAGGAAGGGGGAGGTGATATTCGGGTCGCGGGAGGCGGTTCGGGCCGGCGACGGGGTCCAGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGTTGAAGGGGATTTTCAGGAAAGACGAGGGGCAGGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGGAGGAGGTCACGGCGGCGGAGGTGTGCGTGGCCGTGGAGGGACACGTGGCGATGAGCGAGAGGGTGGCGATGATTGTGAAAAGGCGGGGAAAGTGTGGGTTTCATCCGCTGGAGGAGATCCCGGAGGTGGACGAGGAATCGGACGGCGGGCCTCATCCAAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.09

Weight (kDa)

6.01

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24110
fragaria_vesca	FvH4_5g10980
malus_domestica	MD06G1117900.v1.1 MD14G1125500.v1.1
prunus_persica	Prupe.5G129000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186241 RchiOBHm_Chr7g0186841
rosa_laevigata	RLG00000004811
rosa_multiflora	Rmu_sc0002609.1_g000002 Rmu_sc0012555.1_g000001 Rmu_ssc0000024.1_g000039
rosa_roxburghii	Rroxscaffold_3G00267780
rosa_rugosa	Rorug06G0472900 Rorug06G0477400
rosa_samantha	Rh7BG079800 Rh7CG079800 Rh7DG080300 Rh7DG085000
rosa_wichuraiana	Rw7G006680 Rw7G007300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	4 cut(s)	152, 213, 215, 259
AclWI	GGATC	3 cut(s)	146, 169, 514
AcoI	YGGCCR	1 cut(s)	432
AcvI	CACGTG	1 cut(s)	448
AfiI	CCNNNNNNNGG	4 cut(s)	214, 282, 295, 529
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	59, 325
AjnI	CCWGG	2 cut(s)	22, 35
AluBI	AGCT	2 cut(s)	62, 566
AluI	AGCT	2 cut(s)	62, 566
AlwI	GGATC	3 cut(s)	146, 169, 514
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	33, 273, 432, 551
AspLEI	GCGC	2 cut(s)	154, 215
AspS9I	GGNCC	4 cut(s)	168, 273, 286, 551
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	3 cut(s)	229, 241, 256
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	168, 286
BanI	GGYRCC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	448
BceAI	ACGGC	5 cut(s)	85, 160, 419, 429, 562
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	24, 37
BcnI	CCSGG	1 cut(s)	524
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	3 cut(s)	24, 37, 524
Bme18I	GGWCC	2 cut(s)	168, 286
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	4 cut(s)	168, 273, 286, 551
BmiI	GGNNCC	3 cut(s)	148, 169, 287
BmrFI	CCNGG	3 cut(s)	24, 37, 524
BpmI	CTGGAG	2 cut(s)	404, 533
BpuMI	CCSGG	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	22, 134, 435
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 359, 389
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 282, 295, 529
Bse118I	RCCGGY	2 cut(s)	190, 275
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	24, 37
BseDI	CCNNGG	3 cut(s)	22, 134, 435
BseGI	GGATG	2 cut(s)	505, 556
BseLI	CCNNNNNNNGG	4 cut(s)	214, 282, 295, 529
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	3 cut(s)	326, 419, 530
Bsh1236I	CGCG	4 cut(s)	152, 213, 215, 259
BshFI	GGCC	4 cut(s)	35, 275, 434, 553
BshNI	GGYRCC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	4 cut(s)	107, 191, 276, 524
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	4 cut(s)	214, 282, 295, 529
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	35, 275, 434, 553
BsoBI	CYCGRG	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	138, 159, 174, 519
BspANI	GGCC	4 cut(s)	35, 275, 434, 553
BspFNI	CGCG	4 cut(s)	152, 213, 215, 259
BspLI	GGNNCC	3 cut(s)	148, 169, 287
BspPI	GGATC	3 cut(s)	146, 169, 514
BspT107I	GGYRCC	1 cut(s)	146
BsrFI	RCCGGY	2 cut(s)	190, 275
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	2 cut(s)	190, 275
BssECI	CCNNGG	3 cut(s)	22, 134, 435
BssMI	GATC	4 cut(s)	138, 159, 174, 519
Bst2UI	CCWGG	2 cut(s)	24, 37
Bst4CI	ACNGT	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	4 cut(s)	192, 277, 380, 551
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	505, 556
BstFNI	CGCG	4 cut(s)	152, 213, 215, 259
BstHHI	GCGC	2 cut(s)	154, 215
BstKTI	GATC	4 cut(s)	141, 162, 177, 522
BstMBI	GATC	4 cut(s)	138, 159, 174, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 272
BstNI	CCWGG	2 cut(s)	24, 37
BstSCI	CCNGG	3 cut(s)	22, 35, 522
BstUI	CGCG	4 cut(s)	152, 213, 215, 259
BstX2I	RGATCY	2 cut(s)	174, 519
BstYI	RGATCY	2 cut(s)	174, 519
BsuRI	GGCC	4 cut(s)	35, 275, 434, 553
BtgI	CCRYGG	1 cut(s)	435
BtgZI	GCGATG	2 cut(s)	467, 485
BtsCI	GGATG	2 cut(s)	505, 556
Cac8I	GCNNGC	4 cut(s)	192, 277, 380, 551
CfoI	GCGC	2 cut(s)	154, 215
Cfr10I	RCCGGY	2 cut(s)	190, 275
Cfr13I	GGNCC	4 cut(s)	168, 273, 286, 551
CseI	GACGC	1 cut(s)	211
CviJI	RGCY	9 cut(s)	27, 35, 47, 62, 100, 275, 434, 553, 566
CviKI_1	RGCY	9 cut(s)	27, 35, 47, 62, 100, 275, 434, 553, 566
DpnI	GATC	4 cut(s)	140, 161, 176, 521
DpnII	GATC	4 cut(s)	138, 159, 174, 519
EaeI	YGGCCR	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	168, 286
Eco72I	CACGTG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	22, 35
FaiI	YATR	2 cut(s)	71, 96
FaqI	GGGAC	1 cut(s)	456
FauI	CCCGC	3 cut(s)	252, 480, 542
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	2 cut(s)	492, 543
Fsp4HI	GCNGC	1 cut(s)	417
GlaI	GCGC	2 cut(s)	153, 214
GluI	GCNGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	404, 533
HaeIII	GGCC	4 cut(s)	35, 275, 434, 553
HapII	CCGG	4 cut(s)	107, 191, 276, 524
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	2 cut(s)	154, 215
Hin6I	GCGC	2 cut(s)	152, 213
HinP1I	GCGC	2 cut(s)	152, 213
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	60, 564
HinfI	GANTC	3 cut(s)	55, 110, 539
HpaII	CCGG	4 cut(s)	107, 191, 276, 524
HphI	GGTGA	3 cut(s)	229, 241, 256
Hpy166II	GTNNAC	2 cut(s)	12, 532
Hpy188I	TCNGA	3 cut(s)	135, 179, 544
Hpy188III	TCNNGA	3 cut(s)	157, 199, 337
Hpy8I	GTNNAC	2 cut(s)	12, 532
Hpy99I	CGWCG	3 cut(s)	16, 167, 284
HpyAV	CCTTC	4 cut(s)	220, 229, 310, 319
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	1 cut(s)	372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 272
HpySE526I	ACGT	1 cut(s)	447
HspAI	GCGC	2 cut(s)	152, 213
KroI	GCCGGC	2 cut(s)	190, 275
KroNI	GCCGGC	2 cut(s)	192, 277
Kzo9I	GATC	4 cut(s)	138, 159, 174, 519
LmnI	GCTCC	1 cut(s)	210
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	102, 199, 409
MalI	GATC	4 cut(s)	140, 161, 176, 521
MboI	GATC	4 cut(s)	138, 159, 174, 519
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	2 cut(s)	174, 519
MluCI	AATT	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	202
MroNI	GCCGGC	2 cut(s)	190, 275
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	4 cut(s)	107, 191, 276, 524
MspR9I	CCNGG	3 cut(s)	24, 37, 524
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	2 cut(s)	24, 37
MvnI	CGCG	4 cut(s)	152, 213, 215, 259
MwoI	GCNNNNNNNGC	2 cut(s)	221, 272
NaeI	GCCGGC	2 cut(s)	192, 277
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	4 cut(s)	138, 159, 174, 519
NgoMIV	GCCGGC	2 cut(s)	190, 275
NlaIV	GGNNCC	3 cut(s)	148, 169, 287
NmuCI	GTSAC	2 cut(s)	199, 409
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	1 cut(s)	226
PdiI	GCCGGC	2 cut(s)	192, 277
PfeI	GAWTC	3 cut(s)	55, 110, 539
PflFI	GACNNNGTC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	418
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	22, 35
PspCI	CACGTG	1 cut(s)	448
PspGI	CCWGG	2 cut(s)	22, 35
PspN4I	GGNNCC	3 cut(s)	148, 169, 287
PspPI	GGNCC	4 cut(s)	168, 273, 286, 551
PsuI	RGATCY	2 cut(s)	174, 519
PsyI	GACNNNGTC	1 cut(s)	284
SalI	GTCGAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	138, 159, 174, 519
Sau96I	GGNCC	4 cut(s)	168, 273, 286, 551
ScrFI	CCNGG	3 cut(s)	24, 37, 524
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	168, 286
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	22, 35, 522
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	4 cut(s)	11, 156, 162, 294
TasI	AATT	1 cut(s)	362
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	55, 110, 539
TseFI	GTSAC	2 cut(s)	199, 409
Tsp45I	GTSAC	2 cut(s)	199, 409
TspDTI	ATGAA	2 cut(s)	83, 494
TspGWI	ACGGA	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	168, 286
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.