Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

12566631 .. 12568866

Gene Structure 2236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGGTTTTCTTAGAGATGCTTCTCACGGCGGTTGTTGCTCTCTTGTTTTCTTTCCTTTTGGCCAAGCTCGTTTCTGTTGCTACGGTGGAGAACGATTTGAGTTCTGATCAGCCGCTCAAGCCCGAGATCGGTGTCGGTGTTACAGAGGATGTTCGTTTTGGTATGAAGATGGATGCTCGTGTTCTCGAAAGCCAGAGGAATTTCCAAGTTGTTGATGAGAATGTGGAACTTGTCGATCGGTTTCTTAGCGAAGAAGCTGATCGAGTTTATGAAGTCGATGAAGCTGTTACTGGAAACGCTAAAATCTGTGGTGACCGTGAAGCTGAGTCCTCGGCTGCAGCCTCGTCGGAAAATTATGTGATCGCCGAGGAGGTGATCTTAGTTCGAGGACAGGACGAACAGAGCGACTCGGCTGAAGCTGAGTCCATTTCTTCTGTCTCGCCGGAAAACGTGGTAGCGGAGGAGATTAAGAGTCAAGGACAAGAGGAAGTAACAGAATTAGGAAGAAGTGGTTGCGTAGAAAACGAAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTAGAGTTGAAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAGAGTTGACTATTGAAGAAGATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAATCCGGGAAAGCTGAAGAAATTGGTGCTGAAGCTAAGATGGAGTTGTTTGGCCTTCACAAGATCGCCACTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCGTGCCAAATGGAATGCGTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCAATGGAGCAGTATCTTGCACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCAGGATCATTAGAAGATCCGACCAACTTAGTCACAACTGGTGTTGATGAATCCAGCAAAAATGTTTCAGGGGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

364

Amino Acids

39.53

Weight (kDa)

4.18

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	232 - 309	2.2e-22	Acyl CoA binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	118
AciI	CCGC	4 cut(s)	32, 116, 461, 707
AclWI	GGATC	2 cut(s)	1025, 1027
AcoI	YGGCCR	2 cut(s)	63, 831
AcsI	RAATTY	2 cut(s)	202, 1012
AcuI	CTGAAG	5 cut(s)	438, 636, 765, 780, 822
AfiI	CCNNNNNNNGG	3 cut(s)	131, 804, 1016
AgsI	TTSAA	2 cut(s)	581, 653
AjnI	CCWGG	1 cut(s)	940
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	8 cut(s)	70, 260, 287, 326, 422, 743, 764, 956
AluI	AGCT	8 cut(s)	70, 260, 287, 326, 422, 743, 764, 956
Alw26I	GTCTC	2 cut(s)	445, 931
AlwI	GGATC	2 cut(s)	1025, 1027
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	3 cut(s)	63, 781, 831
ApeKI	GCWGC	3 cut(s)	338, 341, 710
ApoI	RAATTY	2 cut(s)	202, 1012
AsuC2I	CCSGG	1 cut(s)	736
AsuHPI	GGTGA	2 cut(s)	326, 388
AvaI	CYCGRG	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	65
BauI	CACGAG	2 cut(s)	180, 849
BbvI	GCAGC	3 cut(s)	325, 353, 697
BccI	CCATC	2 cut(s)	166, 763
BceAI	ACGGC	2 cut(s)	45, 818
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	1 cut(s)	942
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	736
BcoDI	GTCTC	2 cut(s)	445, 931
BfmI	CTRYAG	2 cut(s)	339, 966
BglI	GCCNNNNNGGC	1 cut(s)	707
BisI	GCNGC	5 cut(s)	116, 339, 342, 708, 711
BlsI	GCNGC	5 cut(s)	117, 340, 343, 709, 712
Bme1390I	CCNGG	2 cut(s)	736, 942
BmeT110I	CYCGRG	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	736, 942
BmsI	GCATC	3 cut(s)	9, 166, 601
BpuEI	CTTGAG	2 cut(s)	104, 713
BpuMI	CCSGG	1 cut(s)	736
BsaJI	CCNNGG	3 cut(s)	333, 369, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 804, 1016
Bse1I	ACTGG	2 cut(s)	298, 1057
Bse3DI	GCAATG	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	3 cut(s)	333, 369, 940
BseGI	GGATG	2 cut(s)	157, 181
BseLI	CCNNNNNNNGG	3 cut(s)	131, 804, 1016
BseMI	GCAATG	1 cut(s)	909
BseMII	CTCAG	3 cut(s)	318, 414, 555
BseNI	ACTGG	2 cut(s)	298, 1057
BseRI	GAGGAG	5 cut(s)	386, 479, 581, 617, 697
BseXI	GCAGC	3 cut(s)	325, 353, 697
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	3 cut(s)	65, 783, 833
BsiEI	CGRYCG	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	446, 735
BslI	CCNNNNNNNGG	3 cut(s)	131, 804, 1016
BsmAI	GTCTC	2 cut(s)	445, 931
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	3 cut(s)	65, 783, 833
BsoBI	CYCGRG	1 cut(s)	125
BspACI	CCGC	4 cut(s)	32, 116, 461, 707
BspANI	GGCC	3 cut(s)	65, 783, 833
BspCNI	CTCAG	3 cut(s)	319, 415, 556
BspHI	TCATGA	1 cut(s)	837
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	2 cut(s)	1025, 1027
BsrBI	CCGCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	298, 1057
BssECI	CCNNGG	3 cut(s)	333, 369, 940
BssSI	CACGAG	2 cut(s)	180, 849
Bst2BI	CACGAG	2 cut(s)	180, 849
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	3 cut(s)	88, 320, 967
Bst6I	CTCTTC	2 cut(s)	624, 891
BstC8I	GCNNGC	1 cut(s)	1004
BstDEI	CTNAG	9 cut(s)	13, 248, 327, 382, 423, 550, 564, 765, 1042
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	157, 181
BstMAI	GTCTC	2 cut(s)	445, 931
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 121, 707
BstNI	CCWGG	1 cut(s)	942
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	734, 940
BstSFI	CTRYAG	2 cut(s)	339, 966
BstV1I	GCAGC	3 cut(s)	325, 353, 697
BstX2I	RGATCY	1 cut(s)	1030
BstYI	RGATCY	1 cut(s)	1030
BsuRI	GGCC	3 cut(s)	65, 783, 833
BtsCI	GGATG	2 cut(s)	157, 181
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	1004
CciI	TCATGA	1 cut(s)	837
CviAII	CATG	3 cut(s)	810, 838, 886
DdeI	CTNAG	9 cut(s)	13, 248, 327, 382, 423, 550, 564, 765, 1042
EaeI	YGGCCR	2 cut(s)	63, 831
Eam1104I	CTCTTC	2 cut(s)	624, 891
EarI	CTCTTC	2 cut(s)	624, 891
Eco57I	CTGAAG	5 cut(s)	438, 636, 765, 780, 822
Eco88I	CYCGRG	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	1012
EcoRII	CCWGG	1 cut(s)	940
FaeI	CATG	3 cut(s)	813, 841, 889
FaiI	YATR	9 cut(s)	167, 273, 360, 596, 811, 830, 839, 887, 963
FatI	CATG	3 cut(s)	809, 837, 885
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	5 cut(s)	116, 339, 342, 708, 711
FokI	GGATG	2 cut(s)	164, 188
Fsp4HI	GCNGC	5 cut(s)	116, 339, 342, 708, 711
GluI	GCNGC	5 cut(s)	116, 339, 342, 708, 711
HaeIII	GGCC	3 cut(s)	65, 783, 833
HapII	CCGG	2 cut(s)	446, 735
Hin1II	CATG	3 cut(s)	813, 841, 889
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HinfI	GANTC	8 cut(s)	329, 410, 425, 475, 560, 731, 889, 1064
HpaII	CCGG	2 cut(s)	446, 735
HphI	GGTGA	2 cut(s)	326, 388
Hpy166II	GTNNAC	2 cut(s)	645, 689
Hpy188I	TCNGA	6 cut(s)	109, 352, 565, 982, 1011, 1035
Hpy188III	TCNNGA	4 cut(s)	188, 838, 893, 1017
Hpy8I	GTNNAC	2 cut(s)	645, 689
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	3 cut(s)	665, 794, 797
HpyCH4III	ACNGT	3 cut(s)	88, 320, 967
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	341, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 121, 707
HpyF3I	CTNAG	9 cut(s)	13, 248, 327, 382, 423, 550, 564, 765, 1042
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	813, 841, 889
Ksp22I	TGATCA	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	907
Lsp1109I	GCAGC	3 cut(s)	325, 353, 697
LweI	GCATC	3 cut(s)	9, 166, 601
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	5 cut(s)	142, 289, 314, 493, 1045
MbiI	CCGCTC	1 cut(s)	118
MflI	RGATCY	1 cut(s)	1030
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	6 cut(s)	202, 355, 500, 675, 750, 1012
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	5 cut(s)	338, 404, 434, 484, 898
MmeI	TCCRAC	2 cut(s)	330, 1058
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	446, 735
MspR9I	CCNGG	2 cut(s)	736, 942
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	942
MwoI	GCNNNNNNNGC	3 cut(s)	38, 121, 707
NciI	CCSGG	1 cut(s)	736
NlaIII	CATG	3 cut(s)	813, 841, 889
NmeAIII	GCCGAG	3 cut(s)	314, 392, 394
NmuCI	GTSAC	2 cut(s)	314, 1045
PagI	TCATGA	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	3 cut(s)	560, 731, 1064
PfoI	TCCNGGA	1 cut(s)	734
PkrI	GCNGC	5 cut(s)	117, 340, 343, 709, 712
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	5 cut(s)	337, 404, 433, 483, 897
PpsI	GAGTC	5 cut(s)	337, 404, 433, 483, 897
Psp6I	CCWGG	1 cut(s)	940
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	940
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	1030
PvuI	CGATCG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	5 cut(s)	116, 339, 342, 708, 711
SchI	GAGTC	5 cut(s)	338, 404, 434, 484, 898
ScrFI	CCNGG	2 cut(s)	736, 942
SfaNI	GCATC	3 cut(s)	9, 166, 601
SfcI	CTRYAG	2 cut(s)	339, 966
SmlI	CTYRAG	2 cut(s)	119, 692
SmoI	CTYRAG	2 cut(s)	119, 692
Sse9I	AATT	6 cut(s)	202, 355, 500, 675, 750, 1012
SsiI	CCGC	4 cut(s)	32, 116, 461, 707
StyD4I	CCNGG	2 cut(s)	734, 940
TaaI	ACNGT	3 cut(s)	88, 320, 967
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	5 cut(s)	189, 237, 265, 279, 388
TasI	AATT	6 cut(s)	202, 355, 500, 675, 750, 1012
TauI	GCSGC	2 cut(s)	118, 710
TfiI	GAWTC	3 cut(s)	560, 731, 1064
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	2 cut(s)	314, 1045
TseI	GCWGC	3 cut(s)	338, 341, 710
Tsp45I	GTSAC	2 cut(s)	314, 1045
TspDTI	ATGAA	5 cut(s)	182, 288, 297, 642, 1077
TspRI	CASTG	1 cut(s)	805
XapI	RAATTY	2 cut(s)	202, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.