Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

56480073 .. 56483302

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGTGCAGAGGTAGCAATGGAGCAGTACATCACTCTTCTTTCAGAAAGTGTTCCTTGGTGGATGCAAGATGTTCATGGTGACTTTGCAGATCCCCAAGTACATGAGACGGTAACTACTTATCTGGACACATTGATTCAAAACCAATCAAACGCTGCAGGTGTAAGAAGAGTAGAAGAACTAAAGCCTAATGTTAAAGGTTTAGATGAGATTGGGGTGGGGGTCGTAACTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

79

Amino Acids

8.75

Weight (kDa)

4.3

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	149
Acc36I	ACCTGC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	86
AfaI	GTAC	2 cut(s)	29, 102
AgsI	TTSAA	2 cut(s)	140, 234
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	42, 163
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	69
BveI	ACCTGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	28, 101
CviAII	CATG	2 cut(s)	77, 104
CviJI	RGCY	1 cut(s)	187
CviKI_1	RGCY	1 cut(s)	187
CviQI	GTAC	2 cut(s)	28, 101
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	42, 163
EarI	CTCTTC	2 cut(s)	42, 163
Eco130I	CCWWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	80, 107
FaiI	YATR	2 cut(s)	78, 105
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	2 cut(s)	76, 103
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	80, 107
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	8, 67, 89, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	80, 107
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	2 cut(s)	110, 144
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	54
MaeIII	GTNAC	3 cut(s)	80, 112, 226
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	29, 180, 188
MflI	RGATCY	1 cut(s)	91
MnlI	CCTC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	195, 238
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	80, 107
NmuCI	GTSAC	1 cut(s)	80
PaqCI	CACCTGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	2 cut(s)	29, 102
RsaNI	GTAC	2 cut(s)	28, 101
SaqAI	TTAA	2 cut(s)	195, 238
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	91
SetI	ASST	3 cut(s)	15, 163, 202
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	156
SgeI	CNNG	7 cut(s)	69, 80, 89, 110, 116, 137, 171
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	112
TatI	WGTACW	2 cut(s)	27, 100
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	195, 238
Tru9I	TTAA	2 cut(s)	195, 238
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.