Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

20628657 .. 20630516

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAACGCGCTACACGCGCTCAGAGTCGAGTAACTATGGGAAATTGGGGCTTAGGGTTTTTGATCAAAATCTTCTTGATCTCGTGGGTAGTTAGGAGGATTGCTGTATTAGTCCTTGACACGCTCTCGCTCTGCAAGCTGCAAATCTCCGACCCCGGCTCCGAGATCTCTCTGCCGCCGCCACCGCAAATGGTTGATAAAGGAAACTGGTTACCTTGTCCCAGGAATGCTTGGCATCAGCTTGGCAACATGAGTGCAGAGGTAGCAATGGAGCAGTACATCACTCTTCTTTCAGAAAGTGTTCCTGGGTGGATGCAAGATGTTCATAGTGACTTTGCAGATCCCCAAGTACATGAGACGGTAACTGCTGATCTGAACACATTGATTCAAAACCAATCAAAAGCTGCAGGTGTAAGAAAAGTAGAAGAACTAAAGCCTGATGTTAAAGGTTTAGATGAGATTGGGGTGGGGGTCGTAACTTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

163

Amino Acids

17.85

Weight (kDa)

5.32

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	398
AccII	CGCG	2 cut(s)	9, 18
AciI	CCGC	3 cut(s)	176, 179, 185
AclWI	GGATC	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	2 cut(s)	278, 351
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	221, 304
AluBI	AGCT	4 cut(s)	139, 241, 404, 485
AluI	AGCT	4 cut(s)	139, 241, 404, 485
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	139, 404
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	2 cut(s)	11, 20
AsuC2I	CCSGG	1 cut(s)	156
BauI	CACGAG	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	126, 391
BciT130I	CCWGG	2 cut(s)	223, 306
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	4 cut(s)	140, 176, 179, 405
BlsI	GCNGC	4 cut(s)	141, 177, 180, 406
Bme1390I	CCNGG	3 cut(s)	156, 223, 306
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	156, 223, 306
BmsI	GCATC	2 cut(s)	244, 303
Bpu10I	CCTNAGC	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	154, 221, 305
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	223, 306
BseDI	CCNNGG	3 cut(s)	154, 221, 305
BseGI	GGATG	1 cut(s)	318
BseJI	GATNNNNATC	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	126, 391
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	2 cut(s)	9, 18
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	350
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	63, 78, 165, 340, 370
BspACI	CCGC	3 cut(s)	176, 179, 185
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	2 cut(s)	9, 18
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	154, 221, 305
BssMI	GATC	5 cut(s)	63, 78, 165, 340, 370
BssSI	CACGAG	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	82
Bst2UI	CCWGG	2 cut(s)	223, 306
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	21, 52
BstEII	GGTNACC	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	2 cut(s)	9, 18
BstHHI	GCGC	2 cut(s)	11, 20
BstKTI	GATC	5 cut(s)	66, 81, 168, 343, 373
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	5 cut(s)	63, 78, 165, 340, 370
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 17, 136, 184, 263
BstNI	CCWGG	2 cut(s)	223, 306
BstPI	GGTNACC	1 cut(s)	210
BstSCI	CCNGG	3 cut(s)	154, 221, 304
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	2 cut(s)	9, 18
BstV1I	GCAGC	2 cut(s)	126, 391
BstX2I	RGATCY	2 cut(s)	165, 340
BstYI	RGATCY	2 cut(s)	165, 340
BtsCI	GGATG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	2 cut(s)	11, 20
Csp6I	GTAC	2 cut(s)	277, 350
CviAII	CATG	2 cut(s)	250, 353
CviJI	RGCY	7 cut(s)	51, 139, 159, 241, 404, 436, 485
CviKI_1	RGCY	7 cut(s)	51, 139, 159, 241, 404, 436, 485
CviQI	GTAC	2 cut(s)	277, 350
DdeI	CTNAG	2 cut(s)	21, 52
DpnI	GATC	5 cut(s)	65, 80, 167, 342, 372
DpnII	GATC	5 cut(s)	63, 78, 165, 340, 370
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	210
EcoO65I	GGTNACC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	221, 304
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	2 cut(s)	253, 356
FaiI	YATR	4 cut(s)	38, 251, 327, 354
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	2 cut(s)	249, 352
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	140, 176, 179, 405
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	4 cut(s)	140, 176, 179, 405
GlaI	GCGC	2 cut(s)	10, 19
GluI	GCNGC	4 cut(s)	140, 176, 179, 405
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	2 cut(s)	11, 20
Hin1II	CATG	2 cut(s)	253, 356
Hin6I	GCGC	2 cut(s)	9, 18
HinP1I	GCGC	2 cut(s)	9, 18
HinfI	GANTC	2 cut(s)	25, 385
HpaII	CCGG	1 cut(s)	156
Hpy188I	TCNGA	5 cut(s)	24, 151, 163, 295, 375
Hpy188III	TCNNGA	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	6 cut(s)	135, 142, 257, 316, 338, 407
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 17, 136, 184, 263
HpyF3I	CTNAG	2 cut(s)	21, 52
Hsp92II	CATG	2 cut(s)	253, 356
HspAI	GCGC	2 cut(s)	9, 18
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	63, 78, 165, 340, 370
LmnI	GCTCC	2 cut(s)	164, 271
LpnPI	CCDG	8 cut(s)	169, 193, 208, 235, 291, 318, 393, 450
Lsp1109I	GCAGC	2 cut(s)	126, 391
LweI	GCATC	2 cut(s)	244, 303
MaeIII	GTNAC	5 cut(s)	31, 210, 329, 361, 475
MalI	GATC	5 cut(s)	65, 80, 167, 342, 372
MboI	GATC	5 cut(s)	63, 78, 165, 340, 370
MboII	GAAGA	3 cut(s)	64, 278, 437
MflI	RGATCY	2 cut(s)	165, 340
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	2 cut(s)	90, 253
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	2 cut(s)	444, 487
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	3 cut(s)	156, 223, 306
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	2 cut(s)	223, 306
MvnI	CGCG	2 cut(s)	9, 18
MwoI	GCNNNNNNNGC	5 cut(s)	15, 17, 136, 184, 263
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	5 cut(s)	63, 78, 165, 340, 370
NlaIII	CATG	2 cut(s)	253, 356
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	329
PaqCI	CACCTGC	1 cut(s)	398
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	141, 177, 180, 406
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	221, 304
PspEI	GGTNACC	1 cut(s)	210
PspGI	CCWGG	2 cut(s)	221, 304
PspN4I	GGNNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	165, 340
RsaI	GTAC	2 cut(s)	278, 351
RsaNI	GTAC	2 cut(s)	277, 350
SaqAI	TTAA	2 cut(s)	444, 487
SatI	GCNGC	4 cut(s)	140, 176, 179, 405
Sau3AI	GATC	5 cut(s)	63, 78, 165, 340, 370
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	3 cut(s)	156, 223, 306
SetI	ASST	8 cut(s)	141, 217, 243, 264, 406, 412, 451, 487
SfaNI	GCATC	2 cut(s)	244, 303
SfcI	CTRYAG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	3 cut(s)	176, 179, 185
StyD4I	CCNGG	3 cut(s)	154, 221, 304
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	43
TatI	WGTACW	2 cut(s)	276, 349
TauI	GCSGC	2 cut(s)	178, 181
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	2 cut(s)	444, 487
Tru9I	TTAA	2 cut(s)	444, 487
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	2 cut(s)	139, 404
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.