Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000264.1

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

168676 .. 172364

Gene Structure 3689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000264.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgcgacgccattggattggtgtaaaagatatctttcgatacttgagatgtatgaatgatatgggcttattctatccctatagagagatgatggattcggacccatcacacaccagaaacgccgccaacgctggcctgcgttctctacccccatcccaaaacgacatgtgttttggaaggctgcaaacctccgacgccggctccaatctctctgccgccgcagccgcaaatgggaatgcttggcatcagcttggcaacatgagtgcagaggtagcaatggagcagtatatcactcttcttttagaaagtgttccttggtggatgcaagatgttcatggtgactttgcagatccccaagtacatgagacggtaactgctgatctggacacattgattcaaaaccaatcaaacgctgcaggtgtaagaagagtagaagaactaaagcctgatgttaaaggtttagatgagattggggtgggggtcgtaacttcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

165

Amino Acids

18.3

Weight (kDa)

4.95

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
AciI	CCGC	4 cut(s)	123, 216, 219, 225
AclWI	GGATC	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	7, 195
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	398
AluBI	AGCT	2 cut(s)	250, 494
AluI	AGCT	2 cut(s)	250, 494
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	181, 221, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	100
BbvI	GCAGC	3 cut(s)	168, 233, 400
BccI	CCATC	3 cut(s)	85, 112, 160
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	2 cut(s)	79, 414
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	7 cut(s)	123, 182, 216, 219, 222, 225, 414
BlsI	GCNGC	7 cut(s)	124, 183, 217, 220, 223, 226, 415
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	102, 202
BmsI	GCATC	2 cut(s)	253, 312
BpuEI	CTTGAG	1 cut(s)	64
BsaHI	GRCGYC	2 cut(s)	7, 195
BsaJI	CCNNGG	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	152, 327
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	168, 233, 400
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	359
BsmBI	CGTCTC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	349, 379
BspACI	CCGC	4 cut(s)	123, 216, 219, 225
BspANI	GGCC	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	102, 202
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	2 cut(s)	349, 379
BssNI	GRCGYC	2 cut(s)	7, 195
BssT1I	CCWWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	300, 421
BstACI	GRCGYC	2 cut(s)	7, 195
BstC8I	GCNNGC	3 cut(s)	133, 137, 199
BstF5I	GGATG	2 cut(s)	152, 327
BstKTI	GATC	2 cut(s)	352, 382
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	2 cut(s)	349, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 221, 224, 272
BstNSI	RCATGY	1 cut(s)	169
BstSFI	CTRYAG	2 cut(s)	79, 414
BstV1I	GCAGC	3 cut(s)	168, 233, 400
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	152, 327
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	3 cut(s)	133, 137, 199
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	2 cut(s)	15, 203
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	4 cut(s)	166, 259, 335, 362
CviJI	RGCY	8 cut(s)	66, 135, 181, 201, 224, 250, 445, 494
CviKI_1	RGCY	8 cut(s)	66, 135, 181, 201, 224, 250, 445, 494
CviQI	GTAC	1 cut(s)	359
DpnI	GATC	2 cut(s)	351, 381
DpnII	GATC	2 cut(s)	349, 379
Eam1104I	CTCTTC	2 cut(s)	300, 421
EarI	CTCTTC	2 cut(s)	300, 421
Eco130I	CCWWGG	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	4 cut(s)	169, 262, 338, 365
FaiI	YATR	8 cut(s)	53, 62, 81, 167, 260, 288, 336, 363
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FatI	CATG	4 cut(s)	165, 258, 334, 361
Fnu4HI	GCNGC	7 cut(s)	123, 182, 216, 219, 222, 225, 414
FokI	GGATG	2 cut(s)	139, 334
Fsp4HI	GCNGC	7 cut(s)	123, 182, 216, 219, 222, 225, 414
GluI	GCNGC	7 cut(s)	123, 182, 216, 219, 222, 225, 414
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	2 cut(s)	15, 203
Hin1I	GRCGYC	2 cut(s)	7, 195
Hin1II	CATG	4 cut(s)	169, 262, 338, 365
HinfI	GANTC	2 cut(s)	95, 394
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	100, 193
Hpy188III	TCNNGA	1 cut(s)	383
Hpy99I	CGWCG	2 cut(s)	9, 197
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	184, 266, 325, 347, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 221, 224, 272
Hsp92I	GRCGYC	2 cut(s)	7, 195
Hsp92II	CATG	4 cut(s)	169, 262, 338, 365
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	349, 379
LmnI	GCTCC	2 cut(s)	206, 280
LpnPI	CCDG	7 cut(s)	117, 127, 149, 211, 368, 402, 459
Lsp1109I	GCAGC	3 cut(s)	168, 233, 400
LweI	GCATC	2 cut(s)	253, 312
MaeIII	GTNAC	3 cut(s)	338, 370, 484
MalI	GATC	2 cut(s)	351, 381
MboI	GATC	2 cut(s)	349, 379
MboII	GAAGA	3 cut(s)	287, 438, 446
MflI	RGATCY	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	199, 262
MroNI	GCCGGC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	453, 496
MspI	CCGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	4 cut(s)	128, 221, 224, 272
NaeI	GCCGGC	1 cut(s)	199
NdeII	GATC	2 cut(s)	349, 379
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	4 cut(s)	169, 262, 338, 365
NlaIV	GGNNCC	2 cut(s)	102, 202
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	169
PaqCI	CACCTGC	1 cut(s)	407
PciI	ACATGT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	95, 394
PkrI	GCNGC	7 cut(s)	124, 183, 217, 220, 223, 226, 415
PscI	ACATGT	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	102, 202
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	453, 496
SatI	GCNGC	7 cut(s)	123, 182, 216, 219, 222, 225, 414
Sau3AI	GATC	2 cut(s)	349, 379
Sau96I	GGNCC	1 cut(s)	100
SetI	ASST	6 cut(s)	191, 252, 273, 421, 460, 496
SfaNI	GCATC	2 cut(s)	253, 312
SfcI	CTRYAG	2 cut(s)	79, 414
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
SsiI	CCGC	4 cut(s)	123, 216, 219, 225
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	37
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	4 cut(s)	125, 218, 221, 227
TfiI	GAWTC	2 cut(s)	95, 394
Tru1I	TTAA	2 cut(s)	453, 496
Tru9I	TTAA	2 cut(s)	453, 496
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	3 cut(s)	181, 221, 413
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	68, 323
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.