Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

9948829 .. 9952557

Gene Structure 3729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGGACTTTATTTCAGATTTTGTATTGACAATTGTTCTGTGTTTCCTGGTACCTTTCTTGCTTTGCTTCCTTTTGCCTGTGATTGTTGCTTTGTGTCCGAGCAGGGATGACCATGTGGGAAAAAGACGGGTTCTTTATGAGTGTAAGCCCAGAGTTCATCGGTGGGAGAGTGAGGTAGGAAGTGGGTTTGTTGAGAAAGCTGTGGAAGTTGATGAGTTTTTGAGTGAGCCCAAAAAGGAAAGTTTGGTTCTTGATGAGTTTTTGGATGAGGGTTTGGATGAGAAGGAGGTTTTGAGAGGAGTTGGAGTTGGTTGTGTGGAGGAGAAGAGTGTTGAGGAAGAAAGGTTTGATGGGTTTGGTGGTTTGTGTGAGTGTGTGGAGAACGTGTTTGATGAAAGTTTGGAGAGGTGTGAGTTTGGGGGAGTTGAGTTTGGTTCGGGGGAAGATGAAGTGGGGGTTGTTTGTTTTGGGGAGAGGAATGTTGAAGAAGAAGGCCTTGATGGGCATGGTGGTGTGGAGAACTTGTTTGAGGAAAGTTGTGTGAGGCATGAGTTTGGTTTGGGGAAAAATGAAGTGGGAGTTTGTTTGATGGAGCGGAATGTTGAAGAAGAAAGTTTTGATGGGGGTGTTGGGGTATGTAGGTATGTAGATTCCTTGGTTGATGAAAGTTCTGAGAGGCATGAAAATGGCGTTGTTGAGTTTGATTTGGGGAAAACCCAAGTGGGAGTTGTTACATTGACTGAGAAGAATGTTGAACAAGAAAGGTTTGAGGGGGATGGTGGTGTGTGTGAGTGTGGAGAGAACTTGGTTGATGAAAGTTCCGAGAGGCATGAATTTGGCGAAGTTGAGTCTGGTTTGGCAAGAAATGAAGCGGGGGTTGTTTGTTTGCCAGAGAAGGATGTTGAGGAAGAATGCTGTGTCGGGGACTGTGGTATATGTGGCTGCAGGGAAAACTTGGCTGATGATAGTTCGGAGAGGCATGAATTTGACGAGATTGAGTTTGATTTGGCAAGAAACCAAGTGGGAACTCTGGAAAGTGAAGAGATCAAGGTGTCAAAATGTGTTGGAAATGATGAAACTGATGAAGCAAAGAACAATGTAGTTGATGGTCAAGCTAATGAGGGGTTATTCAGTGAGGATAATGATTGGGAGGATATAGAAAGAACTGAATTGGAGAGGCTCTTTGCTGCTGCAGTGGTGTTTGTCGGGTCTAAGAGTAATGCTGATAGAGTTTCAAGTCTTGGGAGTGATGTCAAGATGAGGTTGGATGGGCTTCACAAGATTGCTACTCGAGGGCCTTGCTTGGAACCCCAGCCTATGGCATTCAAGATCTCGGCAAGAGCAAAATGGAATGCTTGGCAGCAGCTTGGCAACATGAGTGCAGAGGTAGCAATGGAGCAGTACATCGCCCTTCTTTCAGAAAGTGTACCTGGGTGGATGCAAGATGTTCACGGTGATTTTGTAGATTCCCAAGTGCATAAGAGTGATAAGTCCGTAACTGCTGATCTGAACACAGTGATACAAAACCAATCAGAAGCTGCAGGTAAAAGTAGAAGAACTAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

523

Amino Acids

57.73

Weight (kDa)

4.34

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	393 - 472	2.8e-21	Acyl CoA binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1532
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AccB7I	CCANNNNNTGG	1 cut(s)	1318
AccBSI	CCGCTC	1 cut(s)	595
AciI	CCGC	2 cut(s)	595, 872
AcsI	RAATTY	2 cut(s)	833, 983
AfaI	GTAC	3 cut(s)	51, 1403, 1428
AfiI	CCNNNNNNNGG	1 cut(s)	1318
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	5 cut(s)	485, 605, 755, 1236, 1327
AjnI	CCWGG	2 cut(s)	45, 1429
AluBI	AGCT	4 cut(s)	200, 1115, 1366, 1538
AluI	AGCT	4 cut(s)	200, 1115, 1366, 1538
AlwNI	CAGNNNCTG	1 cut(s)	1538
Ama87I	CYCGRG	1 cut(s)	1290
AoxI	GGCC	2 cut(s)	493, 1295
ApeKI	GCWGC	6 cut(s)	942, 1187, 1190, 1360, 1363, 1538
ApoI	RAATTY	2 cut(s)	833, 983
Asp718I	GGTACC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	1295
AsuHPI	GGTGA	1 cut(s)	1466
AvaI	CYCGRG	1 cut(s)	1290
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	6 cut(s)	929, 1174, 1177, 1372, 1375, 1525
BccI	CCATC	7 cut(s)	344, 494, 583, 614, 770, 1100, 1262
BcgI	CGANNNNNNTGC	2 cut(s)	1281, 1315
BciT130I	CCWGG	2 cut(s)	47, 1431
BfmI	CTRYAG	3 cut(s)	943, 1191, 1539
BfuAI	ACCTGC	1 cut(s)	1532
BglII	AGATCT	1 cut(s)	1329
BisI	GCNGC	6 cut(s)	943, 1188, 1191, 1361, 1364, 1539
BlsI	GCNGC	6 cut(s)	944, 1189, 1192, 1362, 1365, 1540
Bme1390I	CCNGG	2 cut(s)	47, 1431
BmeT110I	CYCGRG	1 cut(s)	1290
BmgT120I	GGNCC	1 cut(s)	1295
BmiI	GGNNCC	2 cut(s)	51, 1308
BmrFI	CCNGG	2 cut(s)	47, 1431
BmsI	GCATC	1 cut(s)	1428
BsaJI	CCNNGG	2 cut(s)	654, 1430
BsaXI	ACNNNNNCTCC	6 cut(s)	291, 321, 371, 401, 509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	1318
Bse3DI	GCAATG	1 cut(s)	1398
BseBI	CCWGG	2 cut(s)	47, 1431
BseDI	CCNNGG	2 cut(s)	654, 1430
BseGI	GGATG	7 cut(s)	112, 271, 283, 781, 904, 1273, 1443
BseLI	CCNNNNNNNGG	1 cut(s)	1318
BseMI	GCAATG	1 cut(s)	1398
BseMII	CTCAG	2 cut(s)	663, 732
BseRI	GAGGAG	2 cut(s)	312, 335
BseXI	GCAGC	6 cut(s)	929, 1174, 1177, 1372, 1375, 1525
BseYI	CCCAGC	1 cut(s)	1311
BsgI	GTGCAG	1 cut(s)	1401
BshFI	GGCC	2 cut(s)	495, 1297
BshNI	GGYRCC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	1290
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	1318
BsmFI	GGGAC	1 cut(s)	938
BsmI	GAATGC	3 cut(s)	917, 1322, 1357
BsnI	GGCC	2 cut(s)	495, 1297
BsoBI	CYCGRG	1 cut(s)	1290
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	1044, 1329, 1504
BspACI	CCGC	2 cut(s)	595, 872
BspANI	GGCC	2 cut(s)	495, 1297
BspCNI	CTCAG	2 cut(s)	664, 733
BspLI	GGNNCC	2 cut(s)	51, 1308
BspMAI	CTGCAG	3 cut(s)	947, 1195, 1543
BspMI	ACCTGC	1 cut(s)	1532
BspT107I	GGYRCC	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	1398
BssECI	CCNNGG	2 cut(s)	654, 1430
BssMI	GATC	3 cut(s)	1044, 1329, 1504
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	2 cut(s)	47, 1431
Bst4CI	ACNGT	3 cut(s)	929, 1454, 1516
Bst6I	CTCTTC	2 cut(s)	320, 1035
BstDEI	CTNAG	3 cut(s)	672, 741, 1212
BstF5I	GGATG	7 cut(s)	112, 271, 283, 781, 904, 1273, 1443
BstKTI	GATC	3 cut(s)	1047, 1332, 1507
BstMBI	GATC	3 cut(s)	1044, 1329, 1504
BstMWI	GCNNNNNNNGC	1 cut(s)	1388
BstNI	CCWGG	2 cut(s)	47, 1431
BstSCI	CCNGG	2 cut(s)	45, 1429
BstSFI	CTRYAG	3 cut(s)	943, 1191, 1539
BstV1I	GCAGC	6 cut(s)	929, 1174, 1177, 1372, 1375, 1525
BstX2I	RGATCY	1 cut(s)	1329
BstYI	RGATCY	1 cut(s)	1329
BsuRI	GGCC	2 cut(s)	495, 1297
BtgZI	GCGATG	1 cut(s)	1390
BtsCI	GGATG	7 cut(s)	112, 271, 283, 781, 904, 1273, 1443
BtsI	GCAGTG	1 cut(s)	1200
BtsIMutI	CAGTG	3 cut(s)	1138, 1200, 1521
BveI	ACCTGC	1 cut(s)	1532
CaiI	CAGNNNCTG	1 cut(s)	1538
Cfr13I	GGNCC	1 cut(s)	1295
Csp6I	GTAC	3 cut(s)	50, 1402, 1427
CviAII	CATG	7 cut(s)	113, 506, 548, 680, 830, 980, 1375
CviQI	GTAC	3 cut(s)	50, 1402, 1427
DdeI	CTNAG	3 cut(s)	672, 741, 1212
DpnI	GATC	3 cut(s)	1046, 1331, 1506
DpnII	GATC	3 cut(s)	1044, 1329, 1504
Eam1104I	CTCTTC	2 cut(s)	320, 1035
EarI	CTCTTC	2 cut(s)	320, 1035
Eco130I	CCWWGG	1 cut(s)	654
Eco147I	AGGCCT	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	1290
EcoO109I	RGGNCCY	1 cut(s)	1295
EcoRII	CCWGG	2 cut(s)	45, 1429
EcoT14I	CCWWGG	1 cut(s)	654
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	654
FaeI	CATG	7 cut(s)	116, 509, 551, 683, 833, 983, 1378
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	1 cut(s)	938
FatI	CATG	7 cut(s)	112, 505, 547, 679, 829, 979, 1374
FauI	CCCGC	1 cut(s)	865
Fnu4HI	GCNGC	6 cut(s)	943, 1188, 1191, 1361, 1364, 1539
FokI	GGATG	7 cut(s)	119, 278, 290, 788, 911, 1280, 1450
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	6 cut(s)	943, 1188, 1191, 1361, 1364, 1539
GluI	GCNGC	6 cut(s)	943, 1188, 1191, 1361, 1364, 1539
GsaI	CCCAGC	1 cut(s)	1315
HaeIII	GGCC	2 cut(s)	495, 1297
Hin1II	CATG	7 cut(s)	116, 509, 551, 683, 833, 983, 1378
HinfI	GANTC	3 cut(s)	650, 848, 1466
HphI	GGTGA	1 cut(s)	1466
Hpy166II	GTNNAC	2 cut(s)	1427, 1450
Hpy188I	TCNGA	9 cut(s)	16, 99, 673, 823, 973, 1420, 1509, 1534, 1568
Hpy188III	TCNNGA	4 cut(s)	251, 1031, 1255, 1327
Hpy8I	GTNNAC	2 cut(s)	1427, 1450
HpyAV	CCTTC	4 cut(s)	277, 485, 889, 1421
HpyCH4III	ACNGT	3 cut(s)	929, 1454, 1516
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	6 cut(s)	945, 1193, 1382, 1441, 1477, 1541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1388
HpyF3I	CTNAG	3 cut(s)	672, 741, 1212
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	7 cut(s)	116, 509, 551, 683, 833, 983, 1378
KpnI	GGTACC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	1044, 1329, 1504
LmnI	GCTCC	2 cut(s)	592, 1396
Lsp1109I	GCAGC	6 cut(s)	929, 1174, 1177, 1372, 1375, 1525
LweI	GCATC	1 cut(s)	1428
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	730, 1495
MalI	GATC	3 cut(s)	1046, 1331, 1506
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	3 cut(s)	1044, 1329, 1504
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	1 cut(s)	1329
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	30, 833, 983, 1169
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	3 cut(s)	283, 1045, 1245
MslI	CAYNNNNRTG	3 cut(s)	510, 684, 1482
MspR9I	CCNGG	2 cut(s)	47, 1431
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	3 cut(s)	917, 1322, 1357
MvaI	CCWGG	2 cut(s)	47, 1431
MwoI	GCNNNNNNNGC	1 cut(s)	1388
NdeII	GATC	3 cut(s)	1044, 1329, 1504
NlaIII	CATG	7 cut(s)	116, 509, 551, 683, 833, 983, 1378
NlaIV	GGNNCC	2 cut(s)	51, 1308
NmeAIII	GCCGAG	1 cut(s)	1313
PaeR7I	CTCGAG	1 cut(s)	1290
PceI	AGGCCT	1 cut(s)	495
PctI	GAATGC	3 cut(s)	917, 1322, 1357
PfeI	GAWTC	2 cut(s)	650, 1466
PflMI	CCANNNNNTGG	1 cut(s)	1318
PkrI	GCNGC	6 cut(s)	944, 1189, 1192, 1362, 1365, 1540
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
Psp6I	CCWGG	2 cut(s)	45, 1429
PspFI	CCCAGC	1 cut(s)	1311
PspGI	CCWGG	2 cut(s)	45, 1429
PspN4I	GGNNCC	2 cut(s)	51, 1308
PspPI	GGNCC	1 cut(s)	1295
PspXI	VCTCGAGB	1 cut(s)	1290
PstI	CTGCAG	3 cut(s)	947, 1195, 1543
PstNI	CAGNNNCTG	1 cut(s)	1538
PsuI	RGATCY	1 cut(s)	1329
RsaI	GTAC	3 cut(s)	51, 1403, 1428
RsaNI	GTAC	3 cut(s)	50, 1402, 1427
RseI	CAYNNNNRTG	3 cut(s)	510, 684, 1482
SatI	GCNGC	6 cut(s)	943, 1188, 1191, 1361, 1364, 1539
Sau3AI	GATC	3 cut(s)	1044, 1329, 1504
Sau96I	GGNCC	1 cut(s)	1295
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	2 cut(s)	47, 1431
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	1428
SfcI	CTRYAG	3 cut(s)	943, 1191, 1539
Sfr274I	CTCGAG	1 cut(s)	1290
SlaI	CTCGAG	1 cut(s)	1290
SmiMI	CAYNNNNRTG	3 cut(s)	510, 684, 1482
SmlI	CTYRAG	1 cut(s)	1290
SmoI	CTYRAG	1 cut(s)	1290
Sse9I	AATT	4 cut(s)	30, 833, 983, 1169
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	595, 872
StuI	AGGCCT	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	45, 1429
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	3 cut(s)	929, 1454, 1516
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	1 cut(s)	1291
TasI	AATT	4 cut(s)	30, 833, 983, 1169
TatI	WGTACW	1 cut(s)	1401
TfiI	GAWTC	2 cut(s)	650, 1466
TscAI	CASTG	3 cut(s)	1138, 1200, 1521
TseI	GCWGC	6 cut(s)	942, 1187, 1190, 1360, 1363, 1538
TspGWI	ACGGA	1 cut(s)	1483
TspRI	CASTG	3 cut(s)	1138, 1200, 1521
Van91I	CCANNNNNTGG	1 cut(s)	1318
XapI	RAATTY	2 cut(s)	833, 983
XhoI	CTCGAG	1 cut(s)	1290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.