Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Forward (+)

30092011 .. 30094924

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTGTGGTACGACCTCGAAGAAGAGCAAAAGCATAACGATGGAGGAGGCGAGAGTGATGACGCCGCCGGGGAGGCTACCACTGTAGAAATCTTCATTGATTTTGGGGTTGGCTGCAAATTTCCGACGCCGACTCCGAGATCTCTCTATCGCCGCAACCGCAAATGGGTATTCTCTTCTCTCACTTCTCCACCTCAAAGACCGGTAGTAGTTCTTGGACGTCGACAACCCTCTTCTGTTCTTGAACCCGATCCAGTTTTACTTCAAACACCGGTTCTTGGGTCTTCTTCTGTTCTTGAATTTGATCTTGAAAGACTGGTTCCTTGGGCTTCGACTTCGGCCTCGGTGTCTCTGAGATTATTTGATGTCTTAAAGAATGCTTGGCATCAGCTTGGCAACATGAGTGCAGAGGTAGCAATGGAGCAGTACATCACTCTTCTTTCAAAAAGTGTTCCTGGGTGGATGCAAGATGTTCATGGTGACTTTGCAGATCCCCAAGTACATGAGACGGTAACTGCTGATCTGGACACATTGATTCAAAACCAATCAAACGTTGCAGGTGTAAGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

191

Amino Acids

21.07

Weight (kDa)

4.75

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
AatII	GACGTC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	3 cut(s)	66, 154, 160
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	2 cut(s)	245, 485
AcsI	RAATTY	2 cut(s)	119, 299
AcyI	GRCGYC	3 cut(s)	63, 128, 220
AfaI	GTAC	3 cut(s)	11, 428, 501
AfiI	CCNNNNNNNGG	2 cut(s)	166, 278
AgeI	ACCGGT	2 cut(s)	202, 271
AgsI	TTSAA	6 cut(s)	245, 266, 299, 311, 444, 539
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	354, 500
AlwI	GGATC	2 cut(s)	245, 485
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	2 cut(s)	119, 299
AsiGI	ACCGGT	2 cut(s)	202, 271
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	354, 500
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	548
BglI	GCCNNNNNGGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	3 cut(s)	66, 115, 154
BlsI	GCNGC	3 cut(s)	67, 116, 155
Bme1390I	CCNGG	2 cut(s)	70, 456
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	70, 456
BmsI	GCATC	2 cut(s)	394, 453
BpiI	GAAGAC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	70
BsaHI	GRCGYC	3 cut(s)	63, 128, 220
BsaJI	CCNNGG	4 cut(s)	69, 323, 342, 455
BsaWI	WCCGGW	2 cut(s)	202, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 278
Bse118I	RCCGGY	2 cut(s)	202, 271
Bse1I	ACTGG	2 cut(s)	254, 321
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	69, 323, 342, 455
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	166, 278
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	254, 321
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	341
BshTI	ACCGGT	2 cut(s)	202, 271
BsiSI	CCGG	3 cut(s)	69, 203, 272
BslI	CCNNNNNNNGG	2 cut(s)	166, 278
BsmAI	GTCTC	2 cut(s)	354, 500
BsmBI	CGTCTC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	5 cut(s)	140, 250, 304, 490, 520
BspACI	CCGC	3 cut(s)	66, 154, 160
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	245, 485
BspQI	GCTCTTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	2 cut(s)	202, 271
BsrI	ACTGG	2 cut(s)	254, 321
BssAI	RCCGGY	2 cut(s)	202, 271
BssECI	CCNNGG	4 cut(s)	69, 323, 342, 455
BssMI	GATC	5 cut(s)	140, 250, 304, 490, 520
BssNI	GRCGYC	3 cut(s)	63, 128, 220
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	85, 511
Bst6I	CTCTTC	4 cut(s)	18, 181, 238, 441
BstACI	GRCGYC	3 cut(s)	63, 128, 220
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	468
BstKTI	GATC	5 cut(s)	143, 253, 307, 493, 523
BstMAI	GTCTC	2 cut(s)	354, 500
BstMBI	GATC	5 cut(s)	140, 250, 304, 490, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 159, 413
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	68, 454
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	140, 490
BstYI	RGATCY	2 cut(s)	140, 490
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	548
Cfr10I	RCCGGY	2 cut(s)	202, 271
CseI	GACGC	2 cut(s)	71, 136
Csp6I	GTAC	3 cut(s)	10, 427, 500
CspAI	ACCGGT	2 cut(s)	202, 271
CviAII	CATG	3 cut(s)	400, 476, 503
CviJI	RGCY	5 cut(s)	77, 114, 329, 341, 391
CviKI_1	RGCY	5 cut(s)	77, 114, 329, 341, 391
CviQI	GTAC	3 cut(s)	10, 427, 500
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	5 cut(s)	142, 252, 306, 492, 522
DpnII	GATC	5 cut(s)	140, 250, 304, 490, 520
Eam1104I	CTCTTC	4 cut(s)	18, 181, 238, 441
EarI	CTCTTC	4 cut(s)	18, 181, 238, 441
Eco130I	CCWWGG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	3 cut(s)	403, 479, 506
FaiI	YATR	4 cut(s)	36, 401, 477, 504
FatI	CATG	3 cut(s)	399, 475, 502
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	66, 115, 154
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	3 cut(s)	66, 115, 154
GluI	GCNGC	3 cut(s)	66, 115, 154
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	3 cut(s)	69, 203, 272
HgaI	GACGC	2 cut(s)	71, 136
Hin1I	GRCGYC	3 cut(s)	63, 128, 220
Hin1II	CATG	3 cut(s)	403, 479, 506
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	2 cut(s)	133, 535
HpaII	CCGG	3 cut(s)	69, 203, 272
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	3 cut(s)	126, 138, 354
Hpy188III	TCNNGA	4 cut(s)	242, 296, 308, 524
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	2 cut(s)	130, 225
HpyCH4III	ACNGT	2 cut(s)	85, 511
HpyCH4IV	ACGT	2 cut(s)	220, 552
HpyCH4V	TGCA	5 cut(s)	117, 407, 466, 488, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 159, 413
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	2 cut(s)	220, 552
Hsp92I	GRCGYC	3 cut(s)	63, 128, 220
Hsp92II	CATG	3 cut(s)	403, 479, 506
Kzo9I	GATC	5 cut(s)	140, 250, 304, 490, 520
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	9 cut(s)	82, 216, 267, 285, 302, 441, 468, 509, 543
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	394, 453
MaeII	ACGT	2 cut(s)	220, 552
MaeIII	GTNAC	2 cut(s)	479, 511
MalI	GATC	5 cut(s)	142, 252, 306, 492, 522
MboI	GATC	5 cut(s)	140, 250, 304, 490, 520
MboII	GAAGA	8 cut(s)	32, 35, 85, 168, 225, 276, 279, 428
MflI	RGATCY	2 cut(s)	140, 490
MluCI	AATT	2 cut(s)	119, 299
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	8 cut(s)	26, 38, 41, 67, 204, 241, 352, 403
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	3 cut(s)	69, 203, 272
MspR9I	CCNGG	2 cut(s)	70, 456
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	74, 159, 413
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	5 cut(s)	140, 250, 304, 490, 520
NlaIII	CATG	3 cut(s)	403, 479, 506
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	479
PaqCI	CACCTGC	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	535
PinAI	ACCGGT	2 cut(s)	202, 271
PkrI	GCNGC	3 cut(s)	67, 116, 155
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	140, 490
RsaI	GTAC	3 cut(s)	11, 428, 501
RsaNI	GTAC	3 cut(s)	10, 427, 500
RseI	CAYNNNNRTG	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	3 cut(s)	66, 115, 154
Sau3AI	GATC	5 cut(s)	140, 250, 304, 490, 520
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	70, 456
SetI	ASST	8 cut(s)	18, 196, 223, 393, 414, 555, 562, 569
SfaNI	GCATC	2 cut(s)	394, 453
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	119, 299
SsiI	CCGC	3 cut(s)	66, 154, 160
StyD4I	CCNGG	2 cut(s)	68, 454
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	85, 511
TaiI	ACGT	2 cut(s)	223, 555
TaqI	TCGA	3 cut(s)	18, 223, 332
TasI	AATT	2 cut(s)	119, 299
TatI	WGTACW	2 cut(s)	426, 499
TauI	GCSGC	2 cut(s)	68, 156
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	2 cut(s)	85, 464
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	2 cut(s)	119, 299
XmiI	GTMKAC	1 cut(s)	223
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.