Rorug02G0143400

Acyl CoA binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003519
Physical Location & Seq
Forward (+)
12600612 .. 12601789
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0143400.1

Sequence Viewer

Length: 783 bp
ATGGCAAAGCGATCCAAACCCCAAACCCAAATTTCTGAAAACCCCTCAACTTCCTCCAAAATCCCATTCCGACCCCAAAAAATTCGAAAACTCTCCACCACCACTACCAAGCTCACCGTCCAAATTTCCTCTGATTTGCCCAAAACCCTAAAACCATTAACCTCCCAATCCGAAATTACCCTCGCCCTAAACCACTTACGGAGCTCCGACCCGCAATTAGCGGCTCTGATCGACTCCTACAGCCCGCCGACGTTCGATTCCGACCGTCCACCGTTCCAATCACTCGCGCGAAGCATTCTGTACCAGCAACTCGCCACCAAAGCCGCCCAATCGATCCACGCCCGATTCGTCTCGCTCTGCGGCGGCGAGTCATCGATCCTCCCCGAAACTCTCCTCTCGCTTTCGGCCCAGAATCTCCGGCAAATCGGAGTTTCGGGCCGGAAAGCCTCTTATCTCCATGACCTGGCAGAGAAGTTCAGTGATGGGACTTTATCGGATTCGGCGATTCTCGAAATGGACGACGAGTCGTTGCTGACAATGCTGACGGTGGTGAAGGGAATTGGGGCTTGGTCGGTGCACATGTTTATGATCTTCTCGCTTAAACGACCTGACGTTCTGCCGGTGGGTGATCTTGGTGTGAGGAAAGGAGTGAAGCTGTTGTATGGTCTGAAGGAGTTGCCAAAGCCTTTGGAGATGGAGGAGGTGTGTGAGAAATGGAGGCCTTATAGGTCTATTGGGTCTTGGTACATGTGGAGGTATATGGAAGCCAAGGGGGTGTTGTAG

Protein Analysis

260

Amino Acids

28.99

Weight (kDa)

9.43

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 97 - 240 1.3e-20 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 463
AccII CGCG 2 cut(s) 287, 289
AciI CCGC 6 cut(s) 212, 221, 245, 324, 360, 363
AclWI GGATC 3 cut(s) 6, 328, 370
AcsI RAATTY 3 cut(s) 30, 81, 123
AcuI CTGAAG 1 cut(s) 689
AfaI GTAC 2 cut(s) 302, 746
AfiI CCNNNNNNNGG 1 cut(s) 463
AflIII ACRYGT 2 cut(s) 579, 747
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 462
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 550, 582
AluBI AGCT 3 cut(s) 112, 204, 655
AluI AGCT 3 cut(s) 112, 204, 655
Alw21I GWGCWC 2 cut(s) 206, 579
Alw26I GTCTC 1 cut(s) 355
Alw44I GTGCAC 1 cut(s) 575
AlwI GGATC 3 cut(s) 6, 328, 370
AoxI GGCC 3 cut(s) 405, 436, 719
ApaLI GTGCAC 1 cut(s) 575
ApoI RAATTY 3 cut(s) 30, 81, 123
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 406, 436
AsuHPI GGTGA 3 cut(s) 106, 562, 638
AsuII TTCGAA 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 579
BanII GRGCYC 1 cut(s) 206
Bbv12I GWGCWC 2 cut(s) 206, 579
BccI CCATC 2 cut(s) 476, 688
BciT130I CCWGG 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 355
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 4 cut(s) 222, 324, 361, 364
BlsI GCNGC 4 cut(s) 223, 325, 362, 365
Bme1390I CCNGG 1 cut(s) 464
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 406, 436
BmrFI CCNGG 1 cut(s) 464
Bpu14I TTCGAA 1 cut(s) 85
Bsa29I ATCGAT 2 cut(s) 332, 374
BsaJI CCNNGG 1 cut(s) 768
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse118I RCCGGY 1 cut(s) 619
BseBI CCWGG 1 cut(s) 464
BseCI ATCGAT 2 cut(s) 332, 374
BseDI CCNNGG 1 cut(s) 768
BseLI CCNNNNNNNGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 383, 713
BseSI GKGCMC 1 cut(s) 579
Bsh1236I CGCG 2 cut(s) 287, 289
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 3 cut(s) 407, 438, 721
BshVI ATCGAT 2 cut(s) 332, 374
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 206, 579
BsiSI CCGG 3 cut(s) 418, 439, 620
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 1 cut(s) 355
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 499
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 3 cut(s) 407, 438, 721
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 206, 579
Bsp143I GATC 6 cut(s) 11, 228, 333, 375, 588, 628
BspACI CCGC 6 cut(s) 212, 221, 245, 324, 360, 363
BspANI GGCC 3 cut(s) 407, 438, 721
BspDI ATCGAT 2 cut(s) 332, 374
BspFNI CGCG 2 cut(s) 287, 289
BspPI GGATC 3 cut(s) 6, 328, 370
BspT104I TTCGAA 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 6 cut(s) 11, 228, 333, 375, 588, 628
BssT1I CCWWGG 1 cut(s) 768
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 4 cut(s) 118, 266, 273, 547
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 245
BstFNI CGCG 2 cut(s) 287, 289
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 6 cut(s) 14, 231, 336, 378, 591, 631
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 6 cut(s) 11, 228, 333, 375, 588, 628
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 320, 538
BstNI CCWGG 1 cut(s) 464
BstNSI RCATGY 2 cut(s) 583, 751
BstSCI CCNGG 1 cut(s) 462
BstSFI CTRYAG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 579
BstUI CGCG 2 cut(s) 287, 289
Bsu15I ATCGAT 2 cut(s) 332, 374
BsuRI GGCC 3 cut(s) 407, 438, 721
BsuTUI ATCGAT 2 cut(s) 332, 374
BtsIMutI CAGTG 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 2 cut(s) 406, 436
ClaI ATCGAT 2 cut(s) 332, 374
Csp6I GTAC 2 cut(s) 301, 745
CviAII CATG 3 cut(s) 458, 580, 748
CviQI GTAC 2 cut(s) 301, 745
DpnI GATC 6 cut(s) 13, 230, 335, 377, 590, 630
DpnII GATC 6 cut(s) 11, 228, 333, 375, 588, 628
DriI GACNNNNNGTC 1 cut(s) 523
Eam1105I GACNNNNNGTC 1 cut(s) 523
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 768
Eco147I AGGCCT 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 768
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 768
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 3 cut(s) 461, 583, 751
FaiI YATR 8 cut(s) 459, 581, 587, 663, 726, 749, 759, 761
FaqI GGGAC 1 cut(s) 499
FatI CATG 3 cut(s) 457, 579, 747
FauI CCCGC 2 cut(s) 219, 252
Fnu4HI GCNGC 4 cut(s) 222, 324, 361, 364
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 222, 324, 361, 364
GlaI GCGC 1 cut(s) 288
GluI GCNGC 4 cut(s) 222, 324, 361, 364
HaeIII GGCC 3 cut(s) 407, 438, 721
HapII CCGG 3 cut(s) 418, 439, 620
HhaI GCGC 1 cut(s) 289
Hin1II CATG 3 cut(s) 461, 583, 751
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 8 cut(s) 233, 257, 345, 368, 412, 497, 505, 524
HpaII CCGG 3 cut(s) 418, 439, 620
HphI GGTGA 3 cut(s) 106, 562, 638
Hpy166II GTNNAC 2 cut(s) 269, 577
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 2 cut(s) 269, 577
Hpy99I CGWCG 2 cut(s) 253, 524
HpyAV CCTTC 2 cut(s) 547, 664
HpyCH4III ACNGT 4 cut(s) 118, 266, 273, 547
HpyCH4IV ACGT 2 cut(s) 251, 612
HpyCH4V TGCA 1 cut(s) 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 538
HpySE526I ACGT 2 cut(s) 251, 612
Hsp92II CATG 3 cut(s) 461, 583, 751
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 6 cut(s) 11, 228, 333, 375, 588, 628
LmnI GCTCC 2 cut(s) 201, 209
LpnPI CCDG 8 cut(s) 317, 422, 431, 449, 452, 476, 621, 633
MaeII ACGT 2 cut(s) 251, 612
MalI GATC 6 cut(s) 13, 230, 335, 377, 590, 630
MboI GATC 6 cut(s) 11, 228, 333, 375, 588, 628
MboII GAAGA 1 cut(s) 583
MhlI GDGCHC 2 cut(s) 206, 579
MluCI AATT 6 cut(s) 30, 81, 123, 174, 215, 558
MlyI GAGTC 3 cut(s) 227, 377, 533
MmeI TCCRAC 3 cut(s) 94, 231, 285
MseI TTAA 2 cut(s) 158, 600
MslI CAYNNNNRTG 1 cut(s) 584
MspI CCGG 3 cut(s) 418, 439, 620
MspR9I CCNGG 1 cut(s) 464
Mva1269I GAATGC 1 cut(s) 294
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 2 cut(s) 287, 289
MwoI GCNNNNNNNGC 2 cut(s) 320, 538
NdeII GATC 6 cut(s) 11, 228, 333, 375, 588, 628
NlaIII CATG 3 cut(s) 461, 583, 751
NspI RCATGY 2 cut(s) 583, 751
NspV TTCGAA 1 cut(s) 85
PceI AGGCCT 1 cut(s) 721
PciI ACATGT 2 cut(s) 579, 747
PcsI WCGNNNNNNNCGW 3 cut(s) 345, 500, 516
PctI GAATGC 1 cut(s) 294
PfeI GAWTC 5 cut(s) 257, 345, 412, 497, 505
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 4 cut(s) 223, 325, 362, 365
PleI GAGTC 3 cut(s) 227, 376, 532
PpsI GAGTC 3 cut(s) 227, 376, 532
PscI ACATGT 2 cut(s) 579, 747
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 462
PspGI CCWGG 1 cut(s) 462
PspPI GGNCC 2 cut(s) 406, 436
RsaI GTAC 2 cut(s) 302, 746
RsaNI GTAC 2 cut(s) 301, 745
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 158, 600
SatI GCNGC 4 cut(s) 222, 324, 361, 364
Sau3AI GATC 6 cut(s) 11, 228, 333, 375, 588, 628
Sau96I GGNCC 2 cut(s) 406, 436
SchI GAGTC 3 cut(s) 227, 377, 533
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 2 cut(s) 206, 579
SfcI CTRYAG 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 584
Sse9I AATT 6 cut(s) 30, 81, 123, 174, 215, 558
SseBI AGGCCT 1 cut(s) 721
SsiI CCGC 6 cut(s) 212, 221, 245, 324, 360, 363
SstI GAGCTC 1 cut(s) 206
StuI AGGCCT 1 cut(s) 721
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 4 cut(s) 118, 266, 273, 547
TaiI ACGT 2 cut(s) 254, 615
TaqI TCGA 6 cut(s) 85, 231, 255, 332, 374, 510
TasI AATT 6 cut(s) 30, 81, 123, 174, 215, 558
TauI GCSGC 4 cut(s) 224, 326, 363, 366
TfiI GAWTC 5 cut(s) 257, 345, 412, 497, 505
Tru1I TTAA 2 cut(s) 158, 600
Tru9I TTAA 2 cut(s) 158, 600
TscAI CASTG 1 cut(s) 484
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 484
Van91I CCANNNNNTGG 1 cut(s) 463
VneI GTGCAC 1 cut(s) 575
XapI RAATTY 3 cut(s) 30, 81, 123
XceI RCATGY 2 cut(s) 583, 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.