Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025013.1

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Forward (+)

21947 .. 24587

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025013.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1761 bp

atggactttatttcagattttgtattgacgattgctctgtgcttcctggtacctttcttgctttgcttccttttgcctgtgattgttgctttgtgtccgagcagggatgaccatgtgggaaaaagacgggttctttatgagtgcatgcccaaaactcatgagtgggagagtgaggtaggtagtgggtttgttgagaaagctgtggaaggtgatgagtttttgggtgagcccaataaggaaagtttggttcttgaggagtttgtggatgagggtttggatgaaaatgaagttttgagaggtgatggagttggttgttggaaggagaagagtgttgaggaagaaaggtttgatggtttgtgtgagtgtgaatgtgtagagaacgtttttgatgaaagttcagagaggtgtgaatttgggggagttgagtttgatttggggaaaaatgaagtgggggttgtttgttttggggagaagaatgttgaagaagaagactttgatgggcatggtggtgtacagaacttgtttgatgaaagttgtgagaggcgtgagtttggtttggggagaaatgaagtgggggttgtttgtttgccggagaagaatgttgaagaagaaaactttgatgggcgtgttggggtatgtgggtatgtagattacttggttgatgaaagttcagagaggtgtgaatttgggggagttgagtttgatttggggaaaaatgaagtgggggttgtttgtttgccggagaagaatgttgaagaagaaaactttgatgggcgtgttggggtatgtgggtatgtagattacttggttgatgaaagttctgagaggcatgaaaatgaaaatggcgggcttgagtttgatttggaccaagcagaagttgttactttgcctgagaagaatgttgaacaagaaagctgtgatggggatggtggtgtgtgtgggtgtggagagaacttggttgatgaaagttccgagaggcatgaatttggagaaattgagtctgatttggcaagaaatgaagtgcgggttgtttgtttgccggagaagtatgttgaggaagaatgctctgctggggatgttggtatatgtggctgcatggagaactcggttggtgcaagttccgagaagcatggatttggcgaaattgagtttggtttggcaagaatccaagtgggaattccggaaagtgaagagatcaacgtgtcaaagtgtgatggaaatgacggaactgatggagccaagaacaatgtagttgatggtgaagttaatgaggggttcttcagtgaggataatgattgggaggctatagaaagaactgaattggagaggctctttggtgctgcagtggtgtttgtcgggtctaagagtaatgctgatagagtttccagtcttgggagtgatgtgaagatgaggttggatgggcttcacaagattgctactcgagggccttgcttggaacgccagcctatggcattcaaggtctcggcaagagcaaaatggaatgcttggcagcagcttggcaacatgagtgcagaggaagcaatggagcagtacatcacccttctttcagaaagtgttcctgggtggatgcaagatgtccatggtgactttgcagatccccaagtatatgagacggtaactgctgatccgaacatgttgattcaaaaccaatcagaagctgcaggtgtaagagaagaagaagaactaaagcctgatgctaaaggtttagatgagattggggtgggggtcgtaacttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

586

Amino Acids

64.6

Weight (kDa)

4.16

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1673
Acc36I	ACCTGC	1 cut(s)	1673
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AccB7I	CCANNNNNTGG	1 cut(s)	1468
AccIII	TCCGGA	1 cut(s)	1180
AciI	CCGC	2 cut(s)	846, 1024
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	2 cut(s)	1610, 1640
AcsI	RAATTY	4 cut(s)	410, 683, 983, 1176
AcuI	CTGAAG	1 cut(s)	1264
AfaI	GTAC	3 cut(s)	51, 513, 1553
AfiI	CCNNNNNNNGG	2 cut(s)	1392, 1468
AflIII	ACRYGT	2 cut(s)	1200, 1653
AgsI	TTSAA	6 cut(s)	482, 605, 755, 905, 1477, 1664
AjnI	CCWGG	2 cut(s)	45, 1579
AjuI	GAANNNNNNNTTGG	6 cut(s)	1134, 1161, 1166, 1193, 1397, 1429
AluBI	AGCT	4 cut(s)	200, 915, 1516, 1679
AluI	AGCT	4 cut(s)	200, 915, 1516, 1679
Alw26I	GTCTC	2 cut(s)	1486, 1625
AlwI	GGATC	2 cut(s)	1610, 1640
AlwNI	CAGNNNCTG	1 cut(s)	1679
Ama87I	CYCGRG	1 cut(s)	1440
Aor13HI	TCCGGA	1 cut(s)	1180
AoxI	GGCC	1 cut(s)	1445
ApeKI	GCWGC	5 cut(s)	1092, 1340, 1510, 1513, 1679
ApoI	RAATTY	4 cut(s)	410, 683, 983, 1176
Asp700I	GAANNNNTTC	1 cut(s)	1575
Asp718I	GGTACC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	865, 1445
AsuHPI	GGTGA	6 cut(s)	221, 236, 311, 1271, 1549, 1616
AvaI	CYCGRG	1 cut(s)	1440
AvaII	GGWCC	1 cut(s)	865
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	5 cut(s)	1079, 1327, 1522, 1525, 1666
BcgI	CGANNNNNNTGC	2 cut(s)	1431, 1465
BciT130I	CCWGG	2 cut(s)	47, 1581
BcoDI	GTCTC	2 cut(s)	1486, 1625
BfmI	CTRYAG	3 cut(s)	1305, 1341, 1680
BfuAI	ACCTGC	1 cut(s)	1673
BisI	GCNGC	5 cut(s)	1093, 1341, 1511, 1514, 1680
BlsI	GCNGC	5 cut(s)	1094, 1342, 1512, 1515, 1681
Bme1390I	CCNGG	2 cut(s)	47, 1581
Bme18I	GGWCC	1 cut(s)	865
BmeT110I	CYCGRG	1 cut(s)	1440
BmgT120I	GGNCC	2 cut(s)	865, 1445
BmiI	GGNNCC	2 cut(s)	51, 1237
BmrFI	CCNGG	2 cut(s)	47, 1581
BmsI	GCATC	2 cut(s)	1578, 1705
BpiI	GAAGAC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	272, 872
BsaI	GGTCTC	1 cut(s)	1486
BsaJI	CCNNGG	2 cut(s)	1580, 1600
BsaWI	WCCGGW	1 cut(s)	1180
Bsc4I	CCNNNNNNNGG	2 cut(s)	1392, 1468
Bse1I	ACTGG	1 cut(s)	1386
Bse3DI	GCAATG	1 cut(s)	1548
BseAI	TCCGGA	1 cut(s)	1180
BseBI	CCWGG	2 cut(s)	47, 1581
BseDI	CCNNGG	2 cut(s)	1580, 1600
BseGI	GGATG	7 cut(s)	112, 271, 283, 931, 1081, 1423, 1593
BseLI	CCNNNNNNNGG	2 cut(s)	1392, 1468
BseMI	GCAATG	1 cut(s)	1548
BseMII	CTCAG	2 cut(s)	813, 882
BseNI	ACTGG	1 cut(s)	1386
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	5 cut(s)	1079, 1327, 1522, 1525, 1666
BseYI	CCCAGC	1 cut(s)	1070
BsgI	GTGCAG	1 cut(s)	1551
BshFI	GGCC	1 cut(s)	1447
BshNI	GGYRCC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	1440
BsiSI	CCGG	4 cut(s)	590, 740, 1040, 1181
BslI	CCNNNNNNNGG	2 cut(s)	1392, 1468
BsmAI	GTCTC	2 cut(s)	1486, 1625
BsmBI	CGTCTC	1 cut(s)	1625
BsmI	GAATGC	3 cut(s)	1067, 1472, 1507
BsnI	GGCC	1 cut(s)	1447
Bso31I	GGTCTC	1 cut(s)	1486
BsoBI	CYCGRG	1 cut(s)	1440
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	1180
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	1194, 1615, 1645
Bsp19I	CCATGG	1 cut(s)	1600
BspACI	CCGC	2 cut(s)	846, 1024
BspANI	GGCC	1 cut(s)	1447
BspCNI	CTCAG	2 cut(s)	814, 883
BspEI	TCCGGA	1 cut(s)	1180
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	51, 1237
BspMAI	CTGCAG	2 cut(s)	1345, 1684
BspMI	ACCTGC	1 cut(s)	1673
BspPI	GGATC	2 cut(s)	1610, 1640
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	1486
BsrDI	GCAATG	1 cut(s)	1548
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	1386
BssECI	CCNNGG	2 cut(s)	1580, 1600
BssMI	GATC	3 cut(s)	1194, 1615, 1645
BssT1I	CCWWGG	1 cut(s)	1600
Bst2UI	CCWGG	2 cut(s)	47, 1581
Bst4CI	ACNGT	1 cut(s)	1636
Bst6I	CTCTTC	2 cut(s)	320, 1185
BstAUI	TGTACA	1 cut(s)	511
BstC8I	GCNNGC	3 cut(s)	146, 848, 1463
BstDEI	CTNAG	3 cut(s)	822, 891, 1362
BstDSI	CCRYGG	1 cut(s)	1600
BstF5I	GGATG	7 cut(s)	112, 271, 283, 931, 1081, 1423, 1593
BstKTI	GATC	3 cut(s)	1197, 1618, 1648
BstMAI	GTCTC	2 cut(s)	1486, 1625
BstMBI	GATC	3 cut(s)	1194, 1615, 1645
BstMWI	GCNNNNNNNGC	2 cut(s)	1458, 1538
BstNI	CCWGG	2 cut(s)	47, 1581
BstNSI	RCATGY	2 cut(s)	148, 1657
BstSCI	CCNGG	2 cut(s)	45, 1579
BstSFI	CTRYAG	3 cut(s)	1305, 1341, 1680
BstV1I	GCAGC	5 cut(s)	1079, 1327, 1522, 1525, 1666
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	1615
BstYI	RGATCY	1 cut(s)	1615
BsuRI	GGCC	1 cut(s)	1447
BtgI	CCRYGG	1 cut(s)	1600
BtsCI	GGATG	7 cut(s)	112, 271, 283, 931, 1081, 1423, 1593
BtsI	GCAGTG	1 cut(s)	1350
BtsIMutI	CAGTG	2 cut(s)	1288, 1350
BveI	ACCTGC	1 cut(s)	1673
Cac8I	GCNNGC	3 cut(s)	146, 848, 1463
CaiI	CAGNNNCTG	1 cut(s)	1679
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	865, 1445
Csp6I	GTAC	3 cut(s)	50, 512, 1552
CviQI	GTAC	3 cut(s)	50, 512, 1552
DdeI	CTNAG	3 cut(s)	822, 891, 1362
DpnI	GATC	3 cut(s)	1196, 1617, 1647
DpnII	GATC	3 cut(s)	1194, 1615, 1645
Eam1104I	CTCTTC	2 cut(s)	320, 1185
EarI	CTCTTC	2 cut(s)	320, 1185
Eco130I	CCWWGG	1 cut(s)	1600
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	1486
Eco47I	GGWCC	1 cut(s)	865
Eco57I	CTGAAG	1 cut(s)	1264
Eco88I	CYCGRG	1 cut(s)	1440
EcoO109I	RGGNCCY	1 cut(s)	1445
EcoRI	GAATTC	1 cut(s)	1176
EcoRII	CCWGG	2 cut(s)	45, 1579
EcoT14I	CCWWGG	1 cut(s)	1600
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	1600
Esp3I	CGTCTC	1 cut(s)	1625
FauI	CCCGC	2 cut(s)	839, 1017
Fnu4HI	GCNGC	5 cut(s)	1093, 1341, 1511, 1514, 1680
FokI	GGATG	7 cut(s)	119, 278, 290, 938, 1088, 1430, 1600
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	5 cut(s)	1093, 1341, 1511, 1514, 1680
GluI	GCNGC	5 cut(s)	1093, 1341, 1511, 1514, 1680
GsaI	CCCAGC	1 cut(s)	1074
HaeIII	GGCC	1 cut(s)	1447
HapII	CCGG	4 cut(s)	590, 740, 1040, 1181
HinfI	GANTC	3 cut(s)	998, 1164, 1660
HpaII	CCGG	4 cut(s)	590, 740, 1040, 1181
HphI	GGTGA	6 cut(s)	221, 236, 311, 1271, 1549, 1616
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188III	TCNNGA	3 cut(s)	158, 251, 1181
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	3 cut(s)	200, 313, 1571
HpyCH4III	ACNGT	1 cut(s)	1636
HpyCH4IV	ACGT	2 cut(s)	381, 1200
HpyCH4V	TGCA	8 cut(s)	144, 1095, 1115, 1343, 1532, 1591, 1613, 1682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1458, 1538
HpyF3I	CTNAG	3 cut(s)	822, 891, 1362
HpySE526I	ACGT	2 cut(s)	381, 1200
Kpn2I	TCCGGA	1 cut(s)	1180
KpnI	GGTACC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	1194, 1615, 1645
LmnI	GCTCC	2 cut(s)	1235, 1546
Lsp1109I	GCAGC	5 cut(s)	1079, 1327, 1522, 1525, 1666
LweI	GCATC	2 cut(s)	1578, 1705
MaeII	ACGT	2 cut(s)	381, 1200
MaeIII	GTNAC	4 cut(s)	880, 1604, 1636, 1750
MalI	GATC	3 cut(s)	1196, 1617, 1647
MboI	GATC	3 cut(s)	1194, 1615, 1645
MflI	RGATCY	1 cut(s)	1615
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	7 cut(s)	410, 683, 983, 993, 1143, 1176, 1319
MlyI	GAGTC	1 cut(s)	1007
MmeI	TCCRAC	2 cut(s)	296, 1395
MroI	TCCGGA	1 cut(s)	1180
MroXI	GAANNNNTTC	1 cut(s)	1575
MseI	TTAA	1 cut(s)	1266
MslI	CAYNNNNRTG	2 cut(s)	507, 834
MspI	CCGG	4 cut(s)	590, 740, 1040, 1181
MspR9I	CCNGG	2 cut(s)	47, 1581
Mva1269I	GAATGC	3 cut(s)	1067, 1472, 1507
MvaI	CCWGG	2 cut(s)	47, 1581
MwoI	GCNNNNNNNGC	2 cut(s)	1458, 1538
NcoI	CCATGG	1 cut(s)	1600
NdeII	GATC	3 cut(s)	1194, 1615, 1645
NlaIV	GGNNCC	2 cut(s)	51, 1237
NmeAIII	GCCGAG	1 cut(s)	1463
NmuCI	GTSAC	1 cut(s)	1604
NspI	RCATGY	2 cut(s)	148, 1657
PaeI	GCATGC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	1440
PagI	TCATGA	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	1673
PciI	ACATGT	1 cut(s)	1653
PctI	GAATGC	3 cut(s)	1067, 1472, 1507
PdmI	GAANNNNTTC	1 cut(s)	1575
PfeI	GAWTC	2 cut(s)	1164, 1660
PflMI	CCANNNNNTGG	1 cut(s)	1468
PkrI	GCNGC	5 cut(s)	1094, 1342, 1512, 1515, 1681
PleI	GAGTC	1 cut(s)	1006
PpsI	GAGTC	1 cut(s)	1006
PscI	ACATGT	1 cut(s)	1653
Psp1406I	AACGTT	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	45, 1579
PspFI	CCCAGC	1 cut(s)	1070
PspGI	CCWGG	2 cut(s)	45, 1579
PspN4I	GGNNCC	2 cut(s)	51, 1237
PspPI	GGNCC	2 cut(s)	865, 1445
PspXI	VCTCGAGB	1 cut(s)	1440
PstI	CTGCAG	2 cut(s)	1345, 1684
PstNI	CAGNNNCTG	1 cut(s)	1679
PsuI	RGATCY	1 cut(s)	1615
RsaI	GTAC	3 cut(s)	51, 513, 1553
RsaNI	GTAC	3 cut(s)	50, 512, 1552
RseI	CAYNNNNRTG	2 cut(s)	507, 834
SaqAI	TTAA	1 cut(s)	1266
SatI	GCNGC	5 cut(s)	1093, 1341, 1511, 1514, 1680
Sau3AI	GATC	3 cut(s)	1194, 1615, 1645
Sau96I	GGNCC	2 cut(s)	865, 1445
SchI	GAGTC	1 cut(s)	1007
ScrFI	CCNGG	2 cut(s)	47, 1581
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	1578, 1705
SfcI	CTRYAG	3 cut(s)	1305, 1341, 1680
Sfr274I	CTCGAG	1 cut(s)	1440
SinI	GGWCC	1 cut(s)	865
SlaI	CTCGAG	1 cut(s)	1440
SmiMI	CAYNNNNRTG	2 cut(s)	507, 834
SmlI	CTYRAG	3 cut(s)	251, 851, 1440
SmoI	CTYRAG	3 cut(s)	251, 851, 1440
SphI	GCATGC	1 cut(s)	148
Sse9I	AATT	7 cut(s)	410, 683, 983, 993, 1143, 1176, 1319
SsiI	CCGC	2 cut(s)	846, 1024
StyD4I	CCNGG	2 cut(s)	45, 1579
StyI	CCWWGG	1 cut(s)	1600
TaaI	ACNGT	1 cut(s)	1636
TaiI	ACGT	2 cut(s)	384, 1203
TaqI	TCGA	1 cut(s)	1441
TasI	AATT	7 cut(s)	410, 683, 983, 993, 1143, 1176, 1319
TatI	WGTACW	2 cut(s)	511, 1551
TfiI	GAWTC	2 cut(s)	1164, 1660
Tru1I	TTAA	1 cut(s)	1266
Tru9I	TTAA	1 cut(s)	1266
TscAI	CASTG	2 cut(s)	1288, 1350
TseFI	GTSAC	1 cut(s)	1604
TseI	GCWGC	5 cut(s)	1092, 1340, 1510, 1513, 1679
Tsp45I	GTSAC	1 cut(s)	1604
TspGWI	ACGGA	1 cut(s)	1239
TspRI	CASTG	2 cut(s)	1288, 1350
Van91I	CCANNNNNTGG	1 cut(s)	1468
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	4 cut(s)	410, 683, 983, 1176
XceI	RCATGY	2 cut(s)	148, 1657
XhoI	CTCGAG	1 cut(s)	1440
XmnI	GAANNNNTTC	1 cut(s)	1575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.