Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

17677181 .. 17680541

Gene Structure 3361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGACTTTATTTCTGATTTTGTATTGACGATTGCTCTGTGTTTCTTGGTACCTTTCTTGCTTTGCTTCCTTTTGCCTGTGATTGTTGCTTTGTGTCCGAGCAGGGATGACCATGTGGGAAAAAGACGGGTTCTTTATGAGTGCAAGCCCAAAACTCATGAGTGGGAGAGTGAGGTAGGTAGTGGGTTTGTTGAGAAAGCTGTGGAAGGTGATGAGTTTTTGGGTGAGCCCAATAAGGAAAGTTTGGTTCTTGAGGAGTTTGTGGATGAGGGTTTGGATGAAAATGAAGTTTTGAGAGGTGATGGAGTTGGTTGTTGGAAGGAGAAGAGTGTTGAGGAAGAAAGGTTTGATGGTTTGTGTGAGTGTGAATGTGTAGAGAACGTTTTTGATGAAAGTTCAGAGAGGTGTGAATTTGGGGGAGTTGAGTTTGATTTGGGGAAAAATGAAGTGGGGGTTGTTTGTTTTGGGGAGAAGAATGTTGAAGAAGAAGACTTTGATGGGCATGGTGGTGTACAGAACTTGTTTGATGAAGGTTGTGAGAGGCGTGAGTTTGGTTTGGGGAGAAATGAAGTGGGGGTTGTTTGTTTACCGGAGAAGAATGTTGAAGAAGAAAACTTTGATGGGCGTGTTGGGGTATGTGGGTATGTAGATTACTTGGTTGATGAAAGTTCTGAGAGGCATGAAAATGAAAATGGCGGGCTTGAGTTTGATTTGGACCAAGCAGGAGTTGTTACTTTGCCTGAGAAGAATGTTGAACAAGAAAGCTGTGATGGGGATGGTGGTGTGTGTGGGTGTGGAGAGAACTTGGTTGATGAAAGTTCCGAGAGGCATGAATTTGGAGAAATTGAGTCTGATTTGGCAAGAAATGAAGTGCGGGTTGTTTGTTTGCCGGAGAAGTATGTTGAGGAAGAATGCTCTGCTGGGGATGTTGGTATATGTGGCTGCGTGGAGAACTCGGTTGGTGCAAGTTCCGAGAAGCATGGATTTGGCGAAATTGAGTTTGGTTTGGCAAGAATCCAAGTGGGAATTCCGGAAAGTGAAGAGATCAACGTGTCAAAGTGTGATGGAAATGACGGAACTGATGGAGCCAAGAACAATGTAGTTGATGGTGAAGTTAATGAGGGGTTCTTCAGTGAGGATAATGATTGGGAGGCTATAGAAAGAACTGAATTGGAGAGGCTCTTTGGTGCAGCAGTGGTGTTTGTCGGGTCTAAGAGTAATGCTGATAGAGTTTCAAGTCTTGGGAGTGATGTGAAGATGAGGTTGGATGGGCTTCACAAGATTGCTACTCGAGGGCCTTGCTTGGAACGCCAGCCTATGGCATTCAAGGTCTCGGCAAGAGCAAAATGGAATGCTTGGCAGCAGCTTGGTAACATGAGTGCAGAGGAAGCAATGGAGCAGTACATCACCCTTCTTTCAGAAAGTGTTCCTGGGTGGATGCAAGATGTCCATGGTGTAAGCATTCAACTTTTGAATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

493

Amino Acids

54.34

Weight (kDa)

4.25

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	393 - 472	3e-21	Acyl CoA binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AccB7I	CCANNNNNTGG	1 cut(s)	1318
AccIII	TCCGGA	1 cut(s)	1030
AciI	CCGC	2 cut(s)	696, 874
AclI	AACGTT	1 cut(s)	381
AcsI	RAATTY	3 cut(s)	410, 833, 1026
AcuI	CTGAAG	1 cut(s)	1114
AfaI	GTAC	3 cut(s)	51, 513, 1403
AfiI	CCNNNNNNNGG	1 cut(s)	1318
AflIII	ACRYGT	1 cut(s)	1050
AgsI	TTSAA	7 cut(s)	482, 605, 755, 1236, 1327, 1466, 1474
AjnI	CCWGG	1 cut(s)	1429
AjuI	GAANNNNNNNTTGG	6 cut(s)	984, 1011, 1016, 1043, 1247, 1279
AluBI	AGCT	3 cut(s)	200, 765, 1366
AluI	AGCT	3 cut(s)	200, 765, 1366
Alw26I	GTCTC	1 cut(s)	1336
Ama87I	CYCGRG	1 cut(s)	1290
Aor13HI	TCCGGA	1 cut(s)	1030
AoxI	GGCC	1 cut(s)	1295
ApeKI	GCWGC	4 cut(s)	942, 1190, 1360, 1363
ApoI	RAATTY	3 cut(s)	410, 833, 1026
Asp700I	GAANNNNTTC	1 cut(s)	1425
Asp718I	GGTACC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	715, 1295
AsuHPI	GGTGA	5 cut(s)	221, 236, 311, 1121, 1399
AvaI	CYCGRG	1 cut(s)	1290
AvaII	GGWCC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	929, 1202, 1372, 1375
BcgI	CGANNNNNNTGC	2 cut(s)	1281, 1315
BciT130I	CCWGG	1 cut(s)	1431
BcoDI	GTCTC	1 cut(s)	1336
BfmI	CTRYAG	1 cut(s)	1155
BisI	GCNGC	4 cut(s)	943, 1191, 1361, 1364
BlsI	GCNGC	4 cut(s)	944, 1192, 1362, 1365
Bme1390I	CCNGG	1 cut(s)	1431
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	1 cut(s)	1290
BmgT120I	GGNCC	2 cut(s)	715, 1295
BmiI	GGNNCC	2 cut(s)	51, 1087
BmrFI	CCNGG	1 cut(s)	1431
BmsI	GCATC	1 cut(s)	1428
BpiI	GAAGAC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	272, 722
BsaI	GGTCTC	1 cut(s)	1336
BsaJI	CCNNGG	2 cut(s)	1430, 1450
BsaWI	WCCGGW	2 cut(s)	589, 1030
Bsc4I	CCNNNNNNNGG	1 cut(s)	1318
Bse3DI	GCAATG	1 cut(s)	1398
BseAI	TCCGGA	1 cut(s)	1030
BseBI	CCWGG	1 cut(s)	1431
BseDI	CCNNGG	2 cut(s)	1430, 1450
BseGI	GGATG	7 cut(s)	112, 271, 283, 781, 931, 1273, 1443
BseLI	CCNNNNNNNGG	1 cut(s)	1318
BseMI	GCAATG	1 cut(s)	1398
BseMII	CTCAG	2 cut(s)	663, 732
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	4 cut(s)	929, 1202, 1372, 1375
BseYI	CCCAGC	1 cut(s)	920
BsgI	GTGCAG	2 cut(s)	1209, 1401
BshFI	GGCC	1 cut(s)	1297
BshNI	GGYRCC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	1290
BsiSI	CCGG	3 cut(s)	590, 890, 1031
BslI	CCNNNNNNNGG	1 cut(s)	1318
BsmAI	GTCTC	1 cut(s)	1336
BsmI	GAATGC	4 cut(s)	917, 1322, 1357, 1461
BsnI	GGCC	1 cut(s)	1297
Bso31I	GGTCTC	1 cut(s)	1336
BsoBI	CYCGRG	1 cut(s)	1290
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	1030
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	1 cut(s)	1044
Bsp19I	CCATGG	1 cut(s)	1450
BspACI	CCGC	2 cut(s)	696, 874
BspANI	GGCC	1 cut(s)	1297
BspCNI	CTCAG	2 cut(s)	664, 733
BspEI	TCCGGA	1 cut(s)	1030
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	51, 1087
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	1336
BsrDI	GCAATG	1 cut(s)	1398
BsrGI	TGTACA	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	1430, 1450
BssMI	GATC	1 cut(s)	1044
BssT1I	CCWWGG	1 cut(s)	1450
Bst2UI	CCWGG	1 cut(s)	1431
Bst6I	CTCTTC	2 cut(s)	320, 1035
BstAUI	TGTACA	1 cut(s)	511
BstC8I	GCNNGC	3 cut(s)	146, 698, 1313
BstDEI	CTNAG	4 cut(s)	672, 741, 1212, 1479
BstDSI	CCRYGG	1 cut(s)	1450
BstF5I	GGATG	7 cut(s)	112, 271, 283, 781, 931, 1273, 1443
BstKTI	GATC	1 cut(s)	1047
BstMAI	GTCTC	1 cut(s)	1336
BstMBI	GATC	1 cut(s)	1044
BstMWI	GCNNNNNNNGC	2 cut(s)	1308, 1388
BstNI	CCWGG	1 cut(s)	1431
BstSCI	CCNGG	1 cut(s)	1429
BstSFI	CTRYAG	1 cut(s)	1155
BstV1I	GCAGC	4 cut(s)	929, 1202, 1372, 1375
BstV2I	GAAGAC	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	1297
BtgI	CCRYGG	1 cut(s)	1450
BtsCI	GGATG	7 cut(s)	112, 271, 283, 781, 931, 1273, 1443
BtsI	GCAGTG	1 cut(s)	1200
BtsIMutI	CAGTG	2 cut(s)	1138, 1200
Cac8I	GCNNGC	3 cut(s)	146, 698, 1313
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	715, 1295
Csp6I	GTAC	3 cut(s)	50, 512, 1402
CviAII	CATG	8 cut(s)	113, 158, 503, 680, 830, 980, 1375, 1451
CviQI	GTAC	3 cut(s)	50, 512, 1402
DdeI	CTNAG	4 cut(s)	672, 741, 1212, 1479
DpnI	GATC	1 cut(s)	1046
DpnII	GATC	1 cut(s)	1044
Eam1104I	CTCTTC	2 cut(s)	320, 1035
EarI	CTCTTC	2 cut(s)	320, 1035
Eco130I	CCWWGG	1 cut(s)	1450
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	1336
Eco47I	GGWCC	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	1114
Eco88I	CYCGRG	1 cut(s)	1290
EcoO109I	RGGNCCY	1 cut(s)	1295
EcoRI	GAATTC	1 cut(s)	1026
EcoRII	CCWGG	1 cut(s)	1429
EcoT14I	CCWWGG	1 cut(s)	1450
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	1450
FaeI	CATG	8 cut(s)	116, 161, 506, 683, 833, 983, 1378, 1454
FatI	CATG	8 cut(s)	112, 157, 502, 679, 829, 979, 1374, 1450
FauI	CCCGC	2 cut(s)	689, 867
Fnu4HI	GCNGC	4 cut(s)	943, 1191, 1361, 1364
FokI	GGATG	7 cut(s)	119, 278, 290, 788, 938, 1280, 1450
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	943, 1191, 1361, 1364
GluI	GCNGC	4 cut(s)	943, 1191, 1361, 1364
GsaI	CCCAGC	1 cut(s)	924
HaeIII	GGCC	1 cut(s)	1297
HapII	CCGG	3 cut(s)	590, 890, 1031
Hin1II	CATG	8 cut(s)	116, 161, 506, 683, 833, 983, 1378, 1454
HinfI	GANTC	3 cut(s)	848, 1014, 1474
HpaII	CCGG	3 cut(s)	590, 890, 1031
HphI	GGTGA	5 cut(s)	221, 236, 311, 1121, 1399
Hpy166II	GTNNAC	2 cut(s)	512, 587
Hpy188I	TCNGA	8 cut(s)	16, 99, 400, 673, 823, 853, 973, 1420
Hpy188III	TCNNGA	3 cut(s)	158, 251, 1031
Hpy8I	GTNNAC	2 cut(s)	512, 587
HpyAV	CCTTC	4 cut(s)	200, 313, 524, 1421
HpyCH4IV	ACGT	2 cut(s)	381, 1050
HpyCH4V	TGCA	5 cut(s)	144, 965, 1190, 1382, 1441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1308, 1388
HpyF3I	CTNAG	4 cut(s)	672, 741, 1212, 1479
HpySE526I	ACGT	2 cut(s)	381, 1050
Hsp92II	CATG	8 cut(s)	116, 161, 506, 683, 833, 983, 1378, 1454
Kpn2I	TCCGGA	1 cut(s)	1030
KpnI	GGTACC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	1044
LmnI	GCTCC	2 cut(s)	1085, 1396
Lsp1109I	GCAGC	4 cut(s)	929, 1202, 1372, 1375
LweI	GCATC	1 cut(s)	1428
MaeII	ACGT	2 cut(s)	381, 1050
MaeIII	GTNAC	2 cut(s)	730, 1370
MalI	GATC	1 cut(s)	1046
MboI	GATC	1 cut(s)	1044
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	6 cut(s)	410, 833, 843, 993, 1026, 1169
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	2 cut(s)	296, 1245
MroI	TCCGGA	1 cut(s)	1030
MroXI	GAANNNNTTC	1 cut(s)	1425
MseI	TTAA	1 cut(s)	1116
MslI	CAYNNNNRTG	2 cut(s)	507, 684
MspI	CCGG	3 cut(s)	590, 890, 1031
MspR9I	CCNGG	1 cut(s)	1431
Mva1269I	GAATGC	4 cut(s)	917, 1322, 1357, 1461
MvaI	CCWGG	1 cut(s)	1431
MwoI	GCNNNNNNNGC	2 cut(s)	1308, 1388
NcoI	CCATGG	1 cut(s)	1450
NdeII	GATC	1 cut(s)	1044
NlaIII	CATG	8 cut(s)	116, 161, 506, 683, 833, 983, 1378, 1454
NlaIV	GGNNCC	2 cut(s)	51, 1087
NmeAIII	GCCGAG	1 cut(s)	1313
PaeR7I	CTCGAG	1 cut(s)	1290
PagI	TCATGA	1 cut(s)	157
PctI	GAATGC	4 cut(s)	917, 1322, 1357, 1461
PdmI	GAANNNNTTC	1 cut(s)	1425
PfeI	GAWTC	2 cut(s)	1014, 1474
PflMI	CCANNNNNTGG	1 cut(s)	1318
PkrI	GCNGC	4 cut(s)	944, 1192, 1362, 1365
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
Psp1406I	AACGTT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	1429
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	1 cut(s)	1429
PspN4I	GGNNCC	2 cut(s)	51, 1087
PspPI	GGNCC	2 cut(s)	715, 1295
PspXI	VCTCGAGB	1 cut(s)	1290
RsaI	GTAC	3 cut(s)	51, 513, 1403
RsaNI	GTAC	3 cut(s)	50, 512, 1402
RseI	CAYNNNNRTG	2 cut(s)	507, 684
SaqAI	TTAA	1 cut(s)	1116
SatI	GCNGC	4 cut(s)	943, 1191, 1361, 1364
Sau3AI	GATC	1 cut(s)	1044
Sau96I	GGNCC	2 cut(s)	715, 1295
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	1 cut(s)	1431
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	1428
SfcI	CTRYAG	1 cut(s)	1155
Sfr274I	CTCGAG	1 cut(s)	1290
SinI	GGWCC	1 cut(s)	715
SlaI	CTCGAG	1 cut(s)	1290
SmiMI	CAYNNNNRTG	2 cut(s)	507, 684
SmlI	CTYRAG	3 cut(s)	251, 701, 1290
SmoI	CTYRAG	3 cut(s)	251, 701, 1290
Sse9I	AATT	6 cut(s)	410, 833, 843, 993, 1026, 1169
SsiI	CCGC	2 cut(s)	696, 874
StyD4I	CCNGG	1 cut(s)	1429
StyI	CCWWGG	1 cut(s)	1450
TaiI	ACGT	2 cut(s)	384, 1053
TaqI	TCGA	1 cut(s)	1291
TasI	AATT	6 cut(s)	410, 833, 843, 993, 1026, 1169
TatI	WGTACW	2 cut(s)	511, 1401
TfiI	GAWTC	2 cut(s)	1014, 1474
Tru1I	TTAA	1 cut(s)	1116
Tru9I	TTAA	1 cut(s)	1116
TscAI	CASTG	2 cut(s)	1138, 1200
TseI	GCWGC	4 cut(s)	942, 1190, 1360, 1363
TspGWI	ACGGA	1 cut(s)	1089
TspRI	CASTG	2 cut(s)	1138, 1200
Van91I	CCANNNNNTGG	1 cut(s)	1318
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	3 cut(s)	410, 833, 1026
XhoI	CTCGAG	1 cut(s)	1290
XmnI	GAANNNNTTC	1 cut(s)	1425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.