Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

23628377 .. 23640503

Gene Structure 12127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG223500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGTGCAGAGGTAGCAATGGAGCAGTACATCACTCTTCTTTCAGAAAGTGTTCCTGGGTGGATGCAAAATGTTCATGGTGACTTTGCAGATCCCCAAGTACATGAGACGGTAACTGCTGATCTGGACACATTGATTCAAAACCAATCAAACGCTGCAGGTGTAAGGATTAACAGACTCTGCGAGTTGTCTTTCTTTAATAAGGTTAGAGTATCTGGTATCCCAGATTATCTCCAATTTCTTGGCTGTGATTGCAGACATCTTGGAGATGACATAGGTAAGAATGTTATCGAAAATGCAAATGATAATGGTGATGATGACTGGGACTATGTAGAAGAGGGACCTGCTGAAATCGTCATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

121

Amino Acids

13.52

Weight (kDa)

4.06

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	149
Acc36I	ACCTGC	2 cut(s)	149, 352
AclWI	GGATC	1 cut(s)	86
AfaI	GTAC	2 cut(s)	29, 102
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	92, 323
AvaII	GGWCC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	156
BfuAI	ACCTGC	2 cut(s)	149, 352
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	27
BslFI	GGGAC	2 cut(s)	338, 354
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	338, 354
Bsp143I	GATC	2 cut(s)	91, 121
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	2 cut(s)	149, 352
BspPI	GGATC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	91, 121
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	42, 330
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	94, 124
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	91, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 252
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	69
BveI	ACCTGC	2 cut(s)	149, 352
CaiI	CAGNNNCTG	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	28, 101
CviAII	CATG	2 cut(s)	77, 104
CviJI	RGCY	1 cut(s)	246
CviKI_1	RGCY	1 cut(s)	246
CviQI	GTAC	2 cut(s)	28, 101
DpnI	GATC	2 cut(s)	93, 123
DpnII	GATC	2 cut(s)	91, 121
Eam1104I	CTCTTC	2 cut(s)	42, 330
EarI	CTCTTC	2 cut(s)	42, 330
Eco47I	GGWCC	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	80, 107
FaiI	YATR	4 cut(s)	78, 105, 275, 330
FaqI	GGGAC	2 cut(s)	338, 354
FatI	CATG	2 cut(s)	76, 103
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	80, 107
HinfI	GANTC	2 cut(s)	136, 177
HphI	GGTGA	2 cut(s)	92, 323
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	6 cut(s)	8, 67, 89, 158, 255, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 252
Hsp92II	CATG	2 cut(s)	80, 107
Kzo9I	GATC	2 cut(s)	91, 121
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	9 cut(s)	42, 69, 110, 144, 201, 237, 307, 346, 357
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	80, 112
MalI	GATC	2 cut(s)	93, 123
MboI	GATC	2 cut(s)	91, 121
MboII	GAAGA	2 cut(s)	29, 347
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	4, 331
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	171, 198
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	14, 252
NdeII	GATC	2 cut(s)	91, 121
NlaIII	CATG	2 cut(s)	80, 107
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	80
PaqCI	CACCTGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	341
PspPPI	RGGWCCY	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	2 cut(s)	29, 102
RsaNI	GTAC	2 cut(s)	28, 101
SaqAI	TTAA	2 cut(s)	171, 198
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	91, 121
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	5 cut(s)	15, 163, 207, 280, 346
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	341
Sse9I	AATT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	236
TatI	WGTACW	2 cut(s)	27, 100
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	171, 198
Tru9I	TTAA	2 cut(s)	171, 198
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.