Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Forward (+)

2418309 .. 2424696

Gene Structure 6388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG014600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGATTCCCAAATAAATAAAGGAGTGGTCCTCGGTGGCGGAGGCACTTCCGCATATCACAAAGTGTGGAGGAGCAGGGAAGAGGAATCAGAGGATGCTCGGAAGAAGAGTAGGTTTGGGCTAGAGTTAGTTTTAGCAACTTTAGAGGTAGATAGCTTAGGTCTGTCTTTGAAGCATGACAGCTTGGTGGAGGTGAAAGTAATGCCGGCTTCTGGTGAGAAGAAGAGCTGTGGAAGACTAAGAAGCTGCAAACCTCCAACGCCGGCTCTGAGATCTCTCTACCGCCGCGGCCGCAAATGGGTATTCTCTTCTCTCACTTCTCCACCTCAAAGACCGGTAGTAGTTCTTGGAAGTCGACAACCCTCTTCTGTTCTTGAACCCGATCCAGTTTTACTTCAAACACCGGTTCTTGGGTCTTCTTCTGTTCTTGAATTTGATCTTGAAAGACTGGTTCCTTGGGCTTCGACTTCGGCCTCGGTGTCTCTGAAATTATTTGATGTCTTCAAGAATGCTTGGCATCAGCTTGGCAACATGAGTGCAGAGGTAGCAATGGAGCAGTACATCACTCTTCTTTCAGAAAGTGTTCCTTGGTGGATGCAAGATGTTCATGGTGACTTTGCATATCCCCAAGTACATGAGACGGTAACTGCTGATCTGGACACATTGATTCAAAACCAATCAAACGCTGCAGGTGTAAGGATTAACAGACTCTGCGAGTTGTCTTTCTTTAATAAGGTTAGAGTATCTGGTATCCCAGATTATCTCCAATTTCTTGGCTGTGATTGCAGACATCTTGGAGATGACATAGAAATCTTCATCATTCAGAAAGTGCAATCAAAACTATCAAGAGCAATATTGATCAAGGAACAATCCAAGAAATATGATTTGGTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

298

Amino Acids

33.28

Weight (kDa)

8.22

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	680
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	288
AciI	CCGC	6 cut(s)	39, 51, 283, 286, 288, 292
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	431
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	2 cut(s)	560, 633
AfiI	CCNNNNNNNGG	3 cut(s)	212, 298, 410
AgeI	ACCGGT	2 cut(s)	334, 403
AgsI	TTSAA	7 cut(s)	172, 377, 398, 431, 443, 505, 671
AjuI	GAANNNNNNNTTGG	1 cut(s)	869
AluBI	AGCT	5 cut(s)	156, 183, 228, 246, 523
AluI	AGCT	5 cut(s)	156, 183, 228, 246, 523
Alw21I	GWGCWC	1 cut(s)	894
Alw26I	GTCTC	2 cut(s)	486, 632
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	711
AoxI	GGCC	2 cut(s)	289, 471
ApeKI	GCWGC	2 cut(s)	246, 686
ApoI	RAATTY	1 cut(s)	431
AsiGI	ACCGGT	2 cut(s)	334, 403
Asp700I	GAANNNNTTC	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	3 cut(s)	205, 227, 623
AvaII	GGWCC	1 cut(s)	28
BbsI	GAAGAC	3 cut(s)	241, 408, 493
Bbv12I	GWGCWC	1 cut(s)	894
BbvI	GCAGC	2 cut(s)	233, 673
BciVI	GTATCC	1 cut(s)	761
BclI	TGATCA	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	486, 632
BfaI	CTAG	2 cut(s)	122, 895
BfmI	CTRYAG	1 cut(s)	687
BfuAI	ACCTGC	1 cut(s)	680
BfuI	GTATCC	1 cut(s)	761
BglII	AGATCT	1 cut(s)	272
BisI	GCNGC	5 cut(s)	247, 286, 289, 292, 687
BlsI	GCNGC	5 cut(s)	248, 287, 290, 293, 688
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	453
BmsI	GCATC	3 cut(s)	85, 526, 585
BpiI	GAAGAC	3 cut(s)	241, 408, 493
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
Bpu10I	CCTNAGC	1 cut(s)	157
BsaJI	CCNNGG	5 cut(s)	31, 286, 455, 474, 587
BsaWI	WCCGGW	2 cut(s)	334, 403
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 298, 410
Bse118I	RCCGGY	4 cut(s)	205, 262, 334, 403
Bse1I	ACTGG	2 cut(s)	386, 453
Bse3DI	GCAATG	1 cut(s)	555
BseDI	CCNNGG	5 cut(s)	31, 286, 455, 474, 587
BseGI	GGATG	2 cut(s)	100, 600
BseLI	CCNNNNNNNGG	3 cut(s)	212, 298, 410
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	386, 453
BseRI	GAGGAG	1 cut(s)	85
BseX3I	CGGCCG	1 cut(s)	289
BseXI	GCAGC	2 cut(s)	233, 673
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	291, 473
BshTI	ACCGGT	2 cut(s)	334, 403
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	894
BsiSI	CCGG	4 cut(s)	206, 263, 335, 404
BslI	CCNNNNNNNGG	3 cut(s)	212, 298, 410
BsmAI	GTCTC	2 cut(s)	486, 632
BsmBI	CGTCTC	1 cut(s)	632
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	291, 473
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	5 cut(s)	272, 382, 436, 652, 858
BspACI	CCGC	6 cut(s)	39, 51, 283, 286, 288, 292
BspANI	GGCC	2 cut(s)	291, 473
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	691
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	4 cut(s)	205, 262, 334, 403
BsrI	ACTGG	2 cut(s)	386, 453
BssAI	RCCGGY	4 cut(s)	205, 262, 334, 403
BssECI	CCNNGG	5 cut(s)	31, 286, 455, 474, 587
BssMI	GATC	5 cut(s)	272, 382, 436, 652, 858
BssT1I	CCWWGG	2 cut(s)	455, 587
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	6 cut(s)	75, 101, 218, 313, 370, 573
BstC8I	GCNNGC	2 cut(s)	207, 264
BstDEI	CTNAG	3 cut(s)	157, 239, 269
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	100, 600
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	5 cut(s)	275, 385, 439, 655, 861
BstMAI	GTCTC	2 cut(s)	486, 632
BstMBI	GATC	5 cut(s)	272, 382, 436, 652, 858
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 545, 783
BstSFI	CTRYAG	1 cut(s)	687
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	233, 673
BstV2I	GAAGAC	3 cut(s)	241, 408, 493
BstX2I	RGATCY	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	272
BstZI	CGGCCG	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	761
BsuRI	GGCC	2 cut(s)	291, 473
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	100, 600
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	207, 264
CaiI	CAGNNNCTG	1 cut(s)	711
CciNI	GCGGCCGC	1 cut(s)	289
Cfr10I	RCCGGY	4 cut(s)	205, 262, 334, 403
Cfr13I	GGNCC	1 cut(s)	28
Cfr42I	CCGCGG	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	559, 632
CspAI	ACCGGT	2 cut(s)	334, 403
CviAII	CATG	4 cut(s)	176, 532, 608, 635
CviQI	GTAC	2 cut(s)	559, 632
DdeI	CTNAG	3 cut(s)	157, 239, 269
DpnI	GATC	5 cut(s)	274, 384, 438, 654, 860
DpnII	GATC	5 cut(s)	272, 382, 436, 652, 858
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	289
EagI	CGGCCG	1 cut(s)	289
Eam1104I	CTCTTC	6 cut(s)	75, 101, 218, 313, 370, 573
EarI	CTCTTC	6 cut(s)	75, 101, 218, 313, 370, 573
EciI	GGCGGA	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	455, 587
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	455, 587
ErhI	CCWWGG	2 cut(s)	455, 587
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	4 cut(s)	179, 535, 611, 638
FaiI	YATR	8 cut(s)	55, 177, 533, 609, 622, 636, 806, 882
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FatI	CATG	4 cut(s)	175, 531, 607, 634
FbaI	TGATCA	1 cut(s)	858
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	247, 286, 289, 292, 687
FokI	GGATG	2 cut(s)	107, 607
Fsp4HI	GCNGC	5 cut(s)	247, 286, 289, 292, 687
FspBI	CTAG	2 cut(s)	122, 895
GluI	GCNGC	5 cut(s)	247, 286, 289, 292, 687
HaeIII	GGCC	2 cut(s)	291, 473
HapII	CCGG	4 cut(s)	206, 263, 335, 404
Hin1II	CATG	4 cut(s)	179, 535, 611, 638
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HinfI	GANTC	4 cut(s)	5, 86, 667, 708
HpaII	CCGG	4 cut(s)	206, 263, 335, 404
HphI	GGTGA	3 cut(s)	205, 227, 623
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	6 cut(s)	91, 102, 270, 486, 577, 825
Hpy188III	TCNNGA	6 cut(s)	374, 428, 440, 505, 656, 846
Hpy8I	GTNNAC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4V	TGCA	7 cut(s)	249, 539, 598, 620, 689, 786, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 545, 783
HpyF3I	CTNAG	3 cut(s)	157, 239, 269
Hsp92II	CATG	4 cut(s)	179, 535, 611, 638
KroI	GCCGGC	2 cut(s)	205, 262
KroNI	GCCGGC	2 cut(s)	207, 264
Ksp22I	TGATCA	1 cut(s)	858
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	272, 382, 436, 652, 858
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	72, 553
Lsp1109I	GCAGC	2 cut(s)	233, 673
LweI	GCATC	3 cut(s)	85, 526, 585
MaeI	CTAG	2 cut(s)	122, 895
MaeIII	GTNAC	2 cut(s)	611, 643
MalI	GATC	5 cut(s)	274, 384, 438, 654, 860
MboI	GATC	5 cut(s)	272, 382, 436, 652, 858
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	894
MluCI	AATT	3 cut(s)	431, 488, 767
MlyI	GAGTC	1 cut(s)	702
MmeI	TCCRAC	1 cut(s)	281
MroNI	GCCGGC	2 cut(s)	205, 262
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	2 cut(s)	702, 729
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	4 cut(s)	206, 263, 335, 404
Mva1269I	GAATGC	1 cut(s)	514
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	291, 545, 783
NaeI	GCCGGC	2 cut(s)	207, 264
NdeII	GATC	5 cut(s)	272, 382, 436, 652, 858
NgoMIV	GCCGGC	2 cut(s)	205, 262
NlaIII	CATG	4 cut(s)	179, 535, 611, 638
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	611
NotI	GCGGCCGC	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	680
PciSI	GCTCTTC	1 cut(s)	218
PctI	GAATGC	1 cut(s)	514
PdiI	GCCGGC	2 cut(s)	207, 264
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	5, 86, 667
PinAI	ACCGGT	2 cut(s)	334, 403
PkrI	GCNGC	5 cut(s)	248, 287, 290, 293, 688
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	691
PstNI	CAGNNNCTG	1 cut(s)	711
PsuI	RGATCY	1 cut(s)	272
RsaI	GTAC	2 cut(s)	560, 633
RsaNI	GTAC	2 cut(s)	559, 632
SacII	CCGCGG	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	702, 729
SatI	GCNGC	5 cut(s)	247, 286, 289, 292, 687
Sau3AI	GATC	5 cut(s)	272, 382, 436, 652, 858
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	702
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	3 cut(s)	85, 526, 585
SfcI	CTRYAG	1 cut(s)	687
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	3 cut(s)	431, 488, 767
SsiI	CCGC	6 cut(s)	39, 51, 283, 286, 288, 292
SspI	AATATT	1 cut(s)	855
SspMI	CTAG	2 cut(s)	122, 895
StyI	CCWWGG	2 cut(s)	455, 587
TaaI	ACNGT	1 cut(s)	643
TaqI	TCGA	2 cut(s)	355, 464
TasI	AATT	3 cut(s)	431, 488, 767
TatI	WGTACW	2 cut(s)	558, 631
TauI	GCSGC	3 cut(s)	288, 291, 294
TfiI	GAWTC	3 cut(s)	5, 86, 667
Tru1I	TTAA	2 cut(s)	702, 729
Tru9I	TTAA	2 cut(s)	702, 729
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	2 cut(s)	246, 686
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	2 cut(s)	596, 805
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	2 cut(s)	122, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.