Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023231.1

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 468

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023231.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ttaccttgtcccaggaatgcttggcatcagcttggcaacatgagtgtagaggtagcaatggagcagtacatcactcttcttacagaaagtgttcctgggtggatgcaagatgtccatggtgactttgcatatccccaagtacatgagacggtaactgctgatctgaacacattgattcaaaaccaatcagaagctgcaggtgtaagagaagaagaagaactaaagcctgatgctaaaggtttagatgagattggggtgggggtcgtaacttcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

92

Amino Acids

10.08

Weight (kDa)

4.27

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	68, 141
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	11, 94
AluBI	AGCT	3 cut(s)	31, 194, 275
AluI	AGCT	3 cut(s)	31, 194, 275
Alw26I	GTCTC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	13, 96
BcoDI	GTCTC	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	13, 96
BmrFI	CCNGG	2 cut(s)	13, 96
BmsI	GCATC	3 cut(s)	34, 93, 220
BsaJI	CCNNGG	3 cut(s)	11, 95, 115
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	13, 96
BseDI	CCNNGG	3 cut(s)	11, 95, 115
BseGI	GGATG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	11, 95, 115
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	13, 96
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	160
BstNI	CCWGG	2 cut(s)	13, 96
BstSCI	CCNGG	2 cut(s)	11, 94
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	67, 140
CviAII	CATG	3 cut(s)	40, 116, 143
CviJI	RGCY	4 cut(s)	31, 194, 226, 275
CviKI_1	RGCY	4 cut(s)	31, 194, 226, 275
CviQI	GTAC	2 cut(s)	67, 140
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	11, 94
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	43, 119, 146
FaiI	YATR	4 cut(s)	41, 117, 130, 144
FatI	CATG	3 cut(s)	39, 115, 142
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	43, 119, 146
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	2 cut(s)	165, 190
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	3 cut(s)	106, 128, 197
Hsp92II	CATG	3 cut(s)	43, 119, 146
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	5 cut(s)	25, 81, 108, 183, 240
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	3 cut(s)	34, 93, 220
MaeIII	GTNAC	3 cut(s)	119, 151, 265
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	4 cut(s)	68, 221, 224, 227
MnlI	CCTC	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	13, 96
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	13, 96
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	43, 119, 146
NmuCI	GTSAC	1 cut(s)	119
PaqCI	CACCTGC	1 cut(s)	188
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	11, 94
PspGI	CCWGG	2 cut(s)	11, 94
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	68, 141
RsaNI	GTAC	2 cut(s)	67, 140
SaqAI	TTAA	1 cut(s)	277
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	13, 96
SetI	ASST	7 cut(s)	7, 33, 54, 196, 202, 241, 277
SfaNI	GCATC	3 cut(s)	34, 93, 220
SfcI	CTRYAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	11, 94
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	151
TatI	WGTACW	2 cut(s)	66, 139
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	277
Tru9I	TTAA	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.