Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

13274868 .. 13278062

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGGTACATTCTGTTAACTGCAGTGTAGTTGAAGAGGATAGGGAGGAAGTAAAAAGTATCATGCTTGAACTGGTGGTAGAGGCACCGAAACCTGCTTCGGATGTGATGCATGCGCCAAAAGATAAGACATCATTAAAGGTCCAGTCGTTGCCTCATCCAACAAAGTCAGACAGGATTGCTGTATTAGTCCTTGACACGCTCTGGCTCTGCAAGCTGCAAATCTCCGACCCCGGCTCCGAGATCTCTCTGCCGCCGCCACCGCAAATGGTTGATAAAGGAAACTGGTTACCTTGTCCCAGGAATGCTTGGCATCAGCTTGGCAACATGAGTGCAGAGGTAGCAATGGAGCAGTACATCACTCTTCTTTCAGAAAGTGTTCCTGGGTGGATGCAAGATGTTCATGGTGACTTTGCAGATCCCCAAGTACATGAGACGGTAACTGCTGATCTGAACACATTGATTCAAAACCAATCAGAAGCTGCAGGTGTAAGAAAAGTAGAAGAACTAAAGCCTGATGTTAAAGGTTTAGATGAGATTGGGGTGGGGGTCGTAACTTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

189

Amino Acids

20.6

Weight (kDa)

4.82

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	476
Acc36I	ACCTGC	2 cut(s)	103, 476
AccB1I	GGYRCC	1 cut(s)	85
AciI	CCGC	3 cut(s)	254, 257, 263
AclWI	GGATC	1 cut(s)	413
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	3 cut(s)	9, 356, 429
AgsI	TTSAA	3 cut(s)	35, 71, 467
AjnI	CCWGG	2 cut(s)	299, 382
AluBI	AGCT	4 cut(s)	217, 319, 482, 563
AluI	AGCT	4 cut(s)	217, 319, 482, 563
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	217, 482
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	204, 469
BciT130I	CCWGG	2 cut(s)	301, 384
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	428
BfmI	CTRYAG	2 cut(s)	22, 483
BfuAI	ACCTGC	2 cut(s)	103, 476
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	4 cut(s)	218, 254, 257, 483
BlsI	GCNGC	4 cut(s)	219, 255, 258, 484
Bme1390I	CCNGG	3 cut(s)	234, 301, 384
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	87, 238
BmrFI	CCNGG	3 cut(s)	234, 301, 384
BmsI	GCATC	3 cut(s)	99, 322, 381
BpuMI	CCSGG	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	232, 299, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bse1I	ACTGG	3 cut(s)	78, 145, 290
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	301, 384
BseDI	CCNNGG	3 cut(s)	232, 299, 383
BseGI	GGATG	3 cut(s)	109, 157, 396
BseMI	GCAATG	1 cut(s)	351
BseNI	ACTGG	3 cut(s)	78, 145, 290
BseXI	GCAGC	2 cut(s)	204, 469
BsgI	GTGCAG	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	428
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	243, 418, 448
BspACI	CCGC	3 cut(s)	254, 257, 263
BspLI	GGNNCC	2 cut(s)	87, 238
BspMAI	CTGCAG	2 cut(s)	26, 487
BspMI	ACCTGC	2 cut(s)	103, 476
BspPI	GGATC	1 cut(s)	413
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	78, 145, 290
BssECI	CCNNGG	3 cut(s)	232, 299, 383
BssMI	GATC	3 cut(s)	243, 418, 448
Bst2UI	CCWGG	2 cut(s)	301, 384
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	30, 369
BstC8I	GCNNGC	2 cut(s)	114, 215
BstEII	GGTNACC	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	109, 157, 396
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	3 cut(s)	246, 421, 451
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	3 cut(s)	243, 418, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 262, 341
BstNI	CCWGG	2 cut(s)	301, 384
BstNSI	RCATGY	1 cut(s)	116
BstPI	GGTNACC	1 cut(s)	288
BstSCI	CCNGG	3 cut(s)	232, 299, 382
BstSFI	CTRYAG	2 cut(s)	22, 483
BstV1I	GCAGC	2 cut(s)	204, 469
BstX2I	RGATCY	2 cut(s)	243, 418
BstYI	RGATCY	2 cut(s)	243, 418
BtsCI	GGATG	3 cut(s)	109, 157, 396
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	2 cut(s)	103, 476
Cac8I	GCNNGC	2 cut(s)	114, 215
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	8, 355, 428
CviAII	CATG	5 cut(s)	64, 113, 328, 404, 431
CviJI	RGCY	7 cut(s)	208, 217, 237, 319, 482, 514, 563
CviKI_1	RGCY	7 cut(s)	208, 217, 237, 319, 482, 514, 563
CviQI	GTAC	3 cut(s)	8, 355, 428
DpnI	GATC	3 cut(s)	245, 420, 450
DpnII	GATC	3 cut(s)	243, 418, 448
Eam1104I	CTCTTC	2 cut(s)	30, 369
EarI	CTCTTC	2 cut(s)	30, 369
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	543
Eco91I	GGTNACC	1 cut(s)	288
EcoO65I	GGTNACC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	299, 382
EcoT22I	ATGCAT	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	5 cut(s)	67, 116, 331, 407, 434
FaiI	YATR	5 cut(s)	65, 114, 329, 405, 432
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	5 cut(s)	63, 112, 327, 403, 430
Fnu4HI	GCNGC	4 cut(s)	218, 254, 257, 483
FokI	GGATG	3 cut(s)	116, 144, 403
Fsp4HI	GCNGC	4 cut(s)	218, 254, 257, 483
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	218, 254, 257, 483
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	5 cut(s)	67, 116, 331, 407, 434
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	463
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	7 cut(s)	103, 172, 229, 241, 373, 453, 478
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	8 cut(s)	24, 112, 213, 220, 335, 394, 416, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 262, 341
Hsp92II	CATG	5 cut(s)	67, 116, 331, 407, 434
HspAI	GCGC	1 cut(s)	116
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	243, 418, 448
LmnI	GCTCC	2 cut(s)	242, 349
Lsp1109I	GCAGC	2 cut(s)	204, 469
LweI	GCATC	3 cut(s)	99, 322, 381
MaeIII	GTNAC	4 cut(s)	288, 407, 439, 553
MalI	GATC	3 cut(s)	245, 420, 450
MboI	GATC	3 cut(s)	243, 418, 448
MboII	GAAGA	3 cut(s)	47, 356, 515
MflI	RGATCY	2 cut(s)	243, 418
MmeI	TCCRAC	2 cut(s)	185, 252
MnlI	CCTC	5 cut(s)	31, 40, 76, 165, 331
Mph1103I	ATGCAT	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	18, 137, 522, 565
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	3 cut(s)	234, 301, 384
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	2 cut(s)	301, 384
MwoI	GCNNNNNNNGC	3 cut(s)	214, 262, 341
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	243, 418, 448
NlaIII	CATG	5 cut(s)	67, 116, 331, 407, 434
NlaIV	GGNNCC	2 cut(s)	87, 238
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	114
NspI	RCATGY	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	476
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	4 cut(s)	219, 255, 258, 484
Psp6I	CCWGG	2 cut(s)	299, 382
PspEI	GGTNACC	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	299, 382
PspN4I	GGNNCC	2 cut(s)	87, 238
PspPI	GGNCC	1 cut(s)	142
PstI	CTGCAG	2 cut(s)	26, 487
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	2 cut(s)	243, 418
RsaI	GTAC	3 cut(s)	9, 356, 429
RsaNI	GTAC	3 cut(s)	8, 355, 428
SaqAI	TTAA	4 cut(s)	18, 137, 522, 565
SatI	GCNGC	4 cut(s)	218, 254, 257, 483
Sau3AI	GATC	3 cut(s)	243, 418, 448
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	234, 301, 384
SfaNI	GCATC	3 cut(s)	99, 322, 381
SfcI	CTRYAG	2 cut(s)	22, 483
SinI	GGWCC	1 cut(s)	142
SphI	GCATGC	1 cut(s)	116
SsiI	CCGC	3 cut(s)	254, 257, 263
StyD4I	CCNGG	3 cut(s)	232, 299, 382
TaaI	ACNGT	1 cut(s)	439
TatI	WGTACW	2 cut(s)	354, 427
TauI	GCSGC	2 cut(s)	256, 259
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	4 cut(s)	18, 137, 522, 565
Tru9I	TTAA	4 cut(s)	18, 137, 522, 565
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	217, 482
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	17, 392
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	142
XceI	RCATGY	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.