Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003510.1

Orthogroup ID

OG0003519

Physical Location & Seq

Genomic Coordinates Reverse (-)

7677 .. 12430

Gene Structure 4754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003510.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgagtgcagaggtagcaatggagcagtacatcactcttctttcagaaagtgttccttggtggatgcaagatgttcatggtatccagttttacttcaaacactggttcttgggtcttcttctgttcttgaatttgatcttgaaagactggttccttgggcttccacttcggcctcggaatgcttggcatcagcttggcaacatgagtgcagaggtagcaatggagcagtacatcactcttctttcagaaagtgttccttggtggatgcaagatgttcatggtgactttgcagatccccaagtatatgagacggtaactgctgatccgaacatgttgattcaaaaccaatcagaagctgcaggtgtaagaagagtagaagaactaaagcctgatgttaaaggtttagatgagattggggttagagtatctggtatcccagattatctccaatttcttggctgtgattgcagacatcttggagatgacataggtaagaatgctttcataagagttctgcagcaggaattaaatgccgttgagaaggacaaggacaaggatgcgttcattgaggacttttctaaggttgtcgacccagcattctggggtagtgcaatggttagaatggtggcgggagtcgggatttccttctggtttttggttcccagattagatcagagggagttcgcgctcaagcttgggactgaggtgaggcagtcaaatgctggcgtggggctccaagggtggaaagacctcggatggggctacaagactggtggcctgggtggtggcgcttggagtcgtgtggacggaactaggacaggtgatttccggcgtgggaaggcagagcattggttggggtctaggtcatgggcacgactctttgggtacccaactgtggacctgggctttcttttgtttggactacttaagatgggcctttgtttgggtcttgtgttctgtttggattcgcatctaggatccaggagactttttttgggctctttcttttactacactttggaattggaatgtcgactacttaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

348

Amino Acids

39.56

Weight (kDa)

5.57

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230 AT4G24230
fragaria_vesca	FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230 FvH4_1g17230
prunus_persica	Prupe.6G224100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107421 RchiOBHm_Chr7g0232431
rosa_laevigata	RLG00000017578 RLG00000023925 RLG00000032300 RLG00000032902
rosa_multiflora	Rmu_sc0003510.1_g000004 Rmu_sc0023231.1_g000001 Rmu_sc0025013.1_g000005 Rmu_ssc0000264.1_g000031
rosa_roxburghii	Rroxscaffold_2G00136360
rosa_rugosa	Rorug02G0143200 Rorug02G0143300 Rorug02G0143400
rosa_samantha	Rh1DG014600 Rh2AG193500 Rh2AG223500 Rh2BG205800 Rh2CG198800 Rh2DG200700
rosa_wichuraiana	Rw2G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	350
Acc65I	GGTACC	1 cut(s)	885
AccB1I	GGYRCC	1 cut(s)	885
AccI	GTMKAC	2 cut(s)	588, 1033
AccII	CGCG	1 cut(s)	686
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	4 cut(s)	287, 317, 972, 985
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	3 cut(s)	29, 230, 887
AfiI	CCNNNNNNNGG	3 cut(s)	757, 895, 943
AflII	CTTAAG	1 cut(s)	926
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	4 cut(s)	97, 130, 142, 341
AjnI	CCWGG	3 cut(s)	777, 900, 980
AluBI	AGCT	3 cut(s)	193, 356, 694
AluI	AGCT	3 cut(s)	193, 356, 694
Alw26I	GTCTC	2 cut(s)	302, 979
AlwI	GGATC	4 cut(s)	287, 317, 972, 985
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	3 cut(s)	170, 775, 934
ApeKI	GCWGC	2 cut(s)	356, 517
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	3 cut(s)	51, 252, 500
Asp718I	GGTACC	1 cut(s)	885
AspLEI	GCGC	2 cut(s)	688, 791
AspS9I	GGNCC	2 cut(s)	898, 934
AsuHPI	GGTGA	3 cut(s)	293, 718, 833
AvaII	GGWCC	1 cut(s)	898
BaeGI	GKGCMC	1 cut(s)	874
BamHI	GGATCC	1 cut(s)	977
BanI	GGYRCC	1 cut(s)	885
BanII	GRGCYC	2 cut(s)	735, 1001
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	343, 529
BccI	CCATC	2 cut(s)	750, 925
BceAI	ACGGC	1 cut(s)	518
BciT130I	CCWGG	3 cut(s)	779, 902, 982
BciVI	GTATCC	2 cut(s)	92, 443
BcoDI	GTCTC	2 cut(s)	302, 979
BfaI	CTAG	3 cut(s)	813, 861, 974
BfmI	CTRYAG	2 cut(s)	357, 515
BfoI	RGCGCY	1 cut(s)	792
BfrI	CTTAAG	1 cut(s)	926
BfuAI	ACCTGC	1 cut(s)	350
BfuI	GTATCC	2 cut(s)	92, 443
BisI	GCNGC	2 cut(s)	357, 518
BlsI	GCNGC	2 cut(s)	358, 519
Bme1390I	CCNGG	3 cut(s)	779, 902, 982
Bme18I	GGWCC	1 cut(s)	898
BmgT120I	GGNCC	2 cut(s)	898, 934
BmiI	GGNNCC	5 cut(s)	152, 660, 734, 887, 979
BmrFI	CCNGG	3 cut(s)	779, 902, 982
BmsI	GCATC	5 cut(s)	54, 196, 255, 547, 979
BpiI	GAAGAC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	969
BsaJI	CCNNGG	8 cut(s)	56, 154, 173, 257, 736, 751, 778, 901
Bsc4I	CCNNNNNNNGG	3 cut(s)	757, 895, 943
Bse1I	ACTGG	4 cut(s)	85, 107, 152, 775
Bse3DI	GCAATG	3 cut(s)	24, 225, 618
Bse8I	GATNNNNATC	1 cut(s)	969
BseBI	CCWGG	3 cut(s)	779, 902, 982
BseDI	CCNNGG	8 cut(s)	56, 154, 173, 257, 736, 751, 778, 901
BseGI	GGATG	4 cut(s)	69, 270, 562, 761
BseJI	GATNNNNATC	1 cut(s)	969
BseLI	CCNNNNNNNGG	3 cut(s)	757, 895, 943
BseMI	GCAATG	3 cut(s)	24, 225, 618
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	4 cut(s)	85, 107, 152, 775
BseSI	GKGCMC	1 cut(s)	874
BseXI	GCAGC	2 cut(s)	343, 529
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	2 cut(s)	27, 228
Bsh1236I	CGCG	1 cut(s)	686
BshFI	GGCC	3 cut(s)	172, 777, 936
BshNI	GGYRCC	1 cut(s)	885
BsiSI	CCGG	1 cut(s)	829
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	3 cut(s)	757, 895, 943
BsmAI	GTCTC	2 cut(s)	302, 979
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	712
BsmI	GAATGC	3 cut(s)	184, 502, 596
BsnI	GGCC	3 cut(s)	172, 777, 936
Bsp1286I	GDGCHC	3 cut(s)	735, 874, 1001
Bsp143I	GATC	5 cut(s)	135, 292, 322, 670, 977
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	3 cut(s)	172, 777, 936
BspCNI	CTCAG	1 cut(s)	694
BspFNI	CGCG	1 cut(s)	686
BspLI	GGNNCC	5 cut(s)	152, 660, 734, 887, 979
BspMAI	CTGCAG	2 cut(s)	361, 519
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	4 cut(s)	287, 317, 972, 985
BspT107I	GGYRCC	1 cut(s)	885
BspTI	CTTAAG	1 cut(s)	926
BsrDI	GCAATG	3 cut(s)	24, 225, 618
BsrI	ACTGG	4 cut(s)	85, 107, 152, 775
BssECI	CCNNGG	8 cut(s)	56, 154, 173, 257, 736, 751, 778, 901
BssMI	GATC	5 cut(s)	135, 292, 322, 670, 977
BssT1I	CCWWGG	4 cut(s)	56, 154, 257, 736
Bst2UI	CCWGG	3 cut(s)	779, 902, 982
Bst4CI	ACNGT	2 cut(s)	313, 895
Bst6I	CTCTTC	3 cut(s)	42, 243, 364
BstAFI	CTTAAG	1 cut(s)	926
BstC8I	GCNNGC	1 cut(s)	724
BstDEI	CTNAG	3 cut(s)	579, 702, 1040
BstF5I	GGATG	4 cut(s)	69, 270, 562, 761
BstFNI	CGCG	1 cut(s)	686
BstH2I	RGCGCY	1 cut(s)	792
BstHHI	GCGC	2 cut(s)	688, 791
BstKTI	GATC	5 cut(s)	138, 295, 325, 673, 980
BstMAI	GTCTC	2 cut(s)	302, 979
BstMBI	GATC	5 cut(s)	135, 292, 322, 670, 977
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 215, 465
BstNI	CCWGG	3 cut(s)	779, 902, 982
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	3 cut(s)	777, 900, 980
BstSFI	CTRYAG	2 cut(s)	357, 515
BstSLI	GKGCMC	1 cut(s)	874
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	2 cut(s)	343, 529
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	2 cut(s)	292, 977
BstXI	CCANNNNNNTGG	2 cut(s)	455, 600
BstYI	RGATCY	2 cut(s)	292, 977
BsuI	GTATCC	2 cut(s)	92, 443
BsuRI	GGCC	3 cut(s)	172, 777, 936
BtsCI	GGATG	4 cut(s)	69, 270, 562, 761
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	724
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	2 cut(s)	688, 791
Cfr13I	GGNCC	2 cut(s)	898, 934
Csp6I	GTAC	3 cut(s)	28, 229, 886
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	5 cut(s)	77, 202, 278, 331, 867
CviQI	GTAC	3 cut(s)	28, 229, 886
DdeI	CTNAG	3 cut(s)	579, 702, 1040
DpnI	GATC	5 cut(s)	137, 294, 324, 672, 979
DpnII	GATC	5 cut(s)	135, 292, 322, 670, 977
Eam1104I	CTCTTC	3 cut(s)	42, 243, 364
EarI	CTCTTC	3 cut(s)	42, 243, 364
Eco130I	CCWWGG	4 cut(s)	56, 154, 257, 736
Eco24I	GRGCYC	2 cut(s)	735, 1001
Eco47I	GGWCC	1 cut(s)	898
EcoRII	CCWGG	3 cut(s)	777, 900, 980
EcoT14I	CCWWGG	4 cut(s)	56, 154, 257, 736
EcoT38I	GRGCYC	2 cut(s)	735, 1001
ErhI	CCWWGG	4 cut(s)	56, 154, 257, 736
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	5 cut(s)	80, 205, 281, 334, 870
FaiI	YATR	9 cut(s)	78, 203, 279, 304, 306, 332, 488, 506, 868
FalI	AAGNNNNNCTT	4 cut(s)	40, 72, 241, 273
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	5 cut(s)	76, 201, 277, 330, 866
FauI	CCCGC	1 cut(s)	622
FblI	GTMKAC	2 cut(s)	588, 1033
Fnu4HI	GCNGC	2 cut(s)	357, 518
FokI	GGATG	4 cut(s)	76, 277, 569, 768
FriOI	GRGCYC	2 cut(s)	735, 1001
Fsp4HI	GCNGC	2 cut(s)	357, 518
FspBI	CTAG	3 cut(s)	813, 861, 974
GlaI	GCGC	2 cut(s)	687, 790
GluI	GCNGC	2 cut(s)	357, 518
GsaI	CCCAGC	1 cut(s)	596
HaeII	RGCGCY	1 cut(s)	792
HaeIII	GGCC	3 cut(s)	172, 777, 936
HapII	CCGG	1 cut(s)	829
HhaI	GCGC	2 cut(s)	688, 791
Hin1II	CATG	5 cut(s)	80, 205, 281, 334, 870
Hin6I	GCGC	2 cut(s)	686, 789
HinP1I	GCGC	2 cut(s)	686, 789
HincII	GTYRAC	2 cut(s)	589, 1034
HindII	GTYRAC	2 cut(s)	589, 1034
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	5 cut(s)	337, 633, 796, 876, 965
HpaII	CCGG	1 cut(s)	829
HphI	GGTGA	3 cut(s)	293, 718, 833
Hpy166II	GTNNAC	4 cut(s)	589, 805, 898, 1034
Hpy188I	TCNGA	7 cut(s)	46, 177, 247, 327, 352, 675, 755
Hpy188III	TCNNGA	3 cut(s)	127, 139, 637
Hpy8I	GTNNAC	4 cut(s)	589, 805, 898, 1034
HpyAV	CCTTC	3 cut(s)	535, 655, 832
HpyCH4III	ACNGT	2 cut(s)	313, 895
HpyCH4V	TGCA	9 cut(s)	8, 67, 209, 268, 290, 359, 468, 517, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 215, 465
HpyF3I	CTNAG	3 cut(s)	579, 702, 1040
Hsp92II	CATG	5 cut(s)	80, 205, 281, 334, 870
HspAI	GCGC	2 cut(s)	686, 789
KpnI	GGTACC	1 cut(s)	889
Kzo9I	GATC	5 cut(s)	135, 292, 322, 670, 977
LmnI	GCTCC	3 cut(s)	22, 223, 738
Lsp1109I	GCAGC	2 cut(s)	343, 529
LweI	GCATC	5 cut(s)	54, 196, 255, 547, 979
MaeI	CTAG	3 cut(s)	813, 861, 974
MaeIII	GTNAC	2 cut(s)	281, 313
MalI	GATC	5 cut(s)	137, 294, 324, 672, 979
MboI	GATC	5 cut(s)	135, 292, 322, 670, 977
MboII	GAAGA	6 cut(s)	29, 107, 110, 230, 381, 389
MflI	RGATCY	2 cut(s)	292, 977
MhlI	GDGCHC	3 cut(s)	735, 874, 1001
MluCI	AATT	4 cut(s)	130, 449, 524, 1022
MlyI	GAGTC	3 cut(s)	642, 805, 870
MnlI	CCTC	8 cut(s)	4, 183, 205, 562, 669, 697, 702, 761
MroXI	GAANNNNTTC	3 cut(s)	51, 252, 500
MseI	TTAA	3 cut(s)	396, 527, 927
MspCI	CTTAAG	1 cut(s)	926
MspI	CCGG	1 cut(s)	829
MspR9I	CCNGG	3 cut(s)	779, 902, 982
Mva1269I	GAATGC	3 cut(s)	184, 502, 596
MvaI	CCWGG	3 cut(s)	779, 902, 982
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	3 cut(s)	14, 215, 465
NdeII	GATC	5 cut(s)	135, 292, 322, 670, 977
NlaIII	CATG	5 cut(s)	80, 205, 281, 334, 870
NlaIV	GGNNCC	5 cut(s)	152, 660, 734, 887, 979
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	350
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	3 cut(s)	184, 502, 596
PdmI	GAANNNNTTC	3 cut(s)	51, 252, 500
PfeI	GAWTC	2 cut(s)	337, 965
PfoI	TCCNGGA	1 cut(s)	980
PkrI	GCNGC	2 cut(s)	358, 519
PleI	GAGTC	3 cut(s)	641, 804, 870
PpsI	GAGTC	3 cut(s)	641, 804, 870
PscI	ACATGT	1 cut(s)	330
Psp6I	CCWGG	3 cut(s)	777, 900, 980
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	3 cut(s)	777, 900, 980
PspN4I	GGNNCC	5 cut(s)	152, 660, 734, 887, 979
PspPI	GGNCC	2 cut(s)	898, 934
PstI	CTGCAG	2 cut(s)	361, 519
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	292, 977
RsaI	GTAC	3 cut(s)	29, 230, 887
RsaNI	GTAC	3 cut(s)	28, 229, 886
SalI	GTCGAC	2 cut(s)	587, 1032
SaqAI	TTAA	3 cut(s)	396, 527, 927
SatI	GCNGC	2 cut(s)	357, 518
Sau3AI	GATC	5 cut(s)	135, 292, 322, 670, 977
Sau96I	GGNCC	2 cut(s)	898, 934
SchI	GAGTC	3 cut(s)	642, 805, 870
ScrFI	CCNGG	3 cut(s)	779, 902, 982
SduI	GDGCHC	3 cut(s)	735, 874, 1001
SfaNI	GCATC	5 cut(s)	54, 196, 255, 547, 979
SfcI	CTRYAG	2 cut(s)	357, 515
SinI	GGWCC	1 cut(s)	898
SmlI	CTYRAG	2 cut(s)	689, 926
SmoI	CTYRAG	2 cut(s)	689, 926
Sse9I	AATT	4 cut(s)	130, 449, 524, 1022
SsiI	CCGC	1 cut(s)	629
SspMI	CTAG	3 cut(s)	813, 861, 974
StyD4I	CCNGG	3 cut(s)	777, 900, 980
StyI	CCWWGG	4 cut(s)	56, 154, 257, 736
TaaI	ACNGT	2 cut(s)	313, 895
TaqI	TCGA	2 cut(s)	588, 1033
TasI	AATT	4 cut(s)	130, 449, 524, 1022
TatI	WGTACW	2 cut(s)	27, 228
TfiI	GAWTC	2 cut(s)	337, 965
Tru1I	TTAA	3 cut(s)	396, 527, 927
Tru9I	TTAA	3 cut(s)	396, 527, 927
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	356, 517
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	65, 266, 493, 553
TspGWI	ACGGA	1 cut(s)	822
TspRI	CASTG	1 cut(s)	107
Vha464I	CTTAAG	1 cut(s)	926
VpaK11BI	GGWCC	1 cut(s)	898
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	2 cut(s)	588, 1033
XmnI	GAANNNNTTC	3 cut(s)	51, 252, 500
XspI	CTAG	3 cut(s)	813, 861, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.