AT4G24380

Ovarian cancer-associated gene 2 protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008449
Physical Location & Seq
Forward (+)
12612378 .. 12613719
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24380.4

Sequence Viewer

Length: 705 bp
ATGGGAAGCGAAGGAAGATCGATTGCGAGGAAGCCAAGGTTTTTGTGTCTCCATGGATTTCGTACGAGCGGAGAGATAATGAAGATACAGCTTCATAAATGGCCTAAATCTGTAATTGATAGACTCGATCTCGTGTTTCTCGATGCACCTTTTCCTTGTCAAGGCAAATCTGATGTCGAAGGCATCTTTGATCCTCCTTATTACGAGTGGTTTCAATTCAACAAGGAATTCACCGAGTATACGAATTTCGAGAAATGTTTGGAGTACCTGGAGGATCGTATGATCAAGCTTGGTCCTTTCGATGGTCTCATTGGGTTTTCCCAGGGTGCAATTTTGTCTGGGGGTTTACCAGGACTGCAAGCTAAGGGAATTGCATTTCAGAAAGTACCAAAGATTAAGTTTGTTATAATCATTGGAGGAGCTAAGCTCAAATCCGCCAAATTGGCCGAGAATGCATATTCGTCTTCCTTGGAAACTCTCTCCCTCCACTTTTTAGGAGAGACTGATTTTCTGAAACCTTACGGAACTCAGCTGATAGAATCGTACAAGAATCCGGTGGTTGTCCATCATCCCAAAGGCCATACTGTCCCAAGGCTTGATGAGAAAAGCTTGGAGAAAGTTACCGCATTTATCGATACCTTAGAGCATCTGGTGATGGAGGAAGACAAGAATGGTGAAGAAAATACTAGTAAGCCAACAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FSH1

Protein Analysis

234

Amino Acids

26.4

Weight (kDa)

6.67

Isoelectric Point (pI)

20.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FSH1 PF03959 10 - 110 8.2e-27 Serine hydrolase (FSH1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccBSI CCGCTC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 239
AciI CCGC 3 cut(s) 69, 435, 624
AclWI GGATC 2 cut(s) 185, 282
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 2 cut(s) 227, 244
AfaI GTAC 4 cut(s) 64, 266, 387, 545
AfiI CCNNNNNNNGG 2 cut(s) 161, 302
AgsI TTSAA 2 cut(s) 215, 220
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 3 cut(s) 267, 321, 349
AluBI AGCT 7 cut(s) 91, 289, 362, 422, 427, 532, 609
AluI AGCT 7 cut(s) 91, 289, 362, 422, 427, 532, 609
Alw26I GTCTC 3 cut(s) 53, 311, 494
AlwI GGATC 2 cut(s) 185, 282
AoxI GGCC 3 cut(s) 101, 444, 577
ApoI RAATTY 2 cut(s) 227, 244
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 3 cut(s) 223, 664, 686
AvaII GGWCC 1 cut(s) 293
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 2 cut(s) 456, 669
BccI CCATC 3 cut(s) 296, 573, 649
BciT130I CCWGG 3 cut(s) 269, 323, 351
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 3 cut(s) 53, 311, 494
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 1 cut(s) 687
BglI GCCNNNNNGGC 1 cut(s) 443
BlpI GCTNAGC 1 cut(s) 423
Bme1390I CCNGG 3 cut(s) 269, 323, 351
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmrFI CCNGG 3 cut(s) 269, 323, 351
BmsI GCATC 3 cut(s) 133, 192, 655
BpiI GAAGAC 2 cut(s) 456, 669
BplI GAGNNNNNCTC 2 cut(s) 411, 443
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 423
Bsa29I ATCGAT 2 cut(s) 20, 633
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 6 cut(s) 35, 52, 321, 322, 468, 590
BsaWI WCCGGW 1 cut(s) 553
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 302
BseBI CCWGG 3 cut(s) 269, 323, 351
BseCI ATCGAT 2 cut(s) 20, 633
BseDI CCNNGG 6 cut(s) 35, 52, 321, 322, 468, 590
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 2 cut(s) 161, 302
BseMII CTCAG 1 cut(s) 542
BseRI GAGGAG 1 cut(s) 432
BshFI GGCC 3 cut(s) 103, 446, 579
BshVI ATCGAT 2 cut(s) 20, 633
BsiSI CCGG 1 cut(s) 554
BsiWI CGTACG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 2 cut(s) 161, 302
BsmAI GTCTC 3 cut(s) 53, 311, 494
BsmFI GGGAC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 3 cut(s) 103, 446, 579
Bso31I GGTCTC 1 cut(s) 311
Bsp143I GATC 5 cut(s) 17, 127, 190, 274, 282
Bsp1720I GCTNAGC 1 cut(s) 423
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 3 cut(s) 69, 435, 624
BspANI GGCC 3 cut(s) 103, 446, 579
BspCNI CTCAG 1 cut(s) 541
BspDI ATCGAT 2 cut(s) 20, 633
BspPI GGATC 2 cut(s) 185, 282
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 69
BssECI CCNNGG 6 cut(s) 35, 52, 321, 322, 468, 590
BssMI GATC 5 cut(s) 17, 127, 190, 274, 282
BssNAI GTATAC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 4 cut(s) 35, 52, 468, 590
Bst1107I GTATAC 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 3 cut(s) 269, 323, 351
Bst4CI ACNGT 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 4 cut(s) 363, 423, 528, 640
BstDSI CCRYGG 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 5 cut(s) 20, 130, 193, 277, 285
BstMAI GTCTC 3 cut(s) 53, 311, 494
BstMBI GATC 5 cut(s) 17, 127, 190, 274, 282
BstMWI GCNNNNNNNGC 2 cut(s) 443, 452
BstNI CCWGG 3 cut(s) 269, 323, 351
BstSCI CCNGG 3 cut(s) 267, 321, 349
BstV2I GAAGAC 2 cut(s) 456, 669
BstZ17I GTATAC 1 cut(s) 240
Bsu15I ATCGAT 2 cut(s) 20, 633
BsuRI GGCC 3 cut(s) 103, 446, 579
BsuTUI ATCGAT 2 cut(s) 20, 633
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 293
ClaI ATCGAT 2 cut(s) 20, 633
Csp6I GTAC 4 cut(s) 63, 265, 386, 544
CviAII CATG 1 cut(s) 53
CviQI GTAC 4 cut(s) 63, 265, 386, 544
DdeI CTNAG 4 cut(s) 363, 423, 528, 640
DpnI GATC 5 cut(s) 19, 129, 192, 276, 284
DpnII GATC 5 cut(s) 17, 127, 190, 274, 282
EaeI YGGCCR 1 cut(s) 444
EciI GGCGGA 1 cut(s) 424
Eco130I CCWWGG 4 cut(s) 35, 52, 468, 590
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 3 cut(s) 267, 321, 349
EcoT14I CCWWGG 4 cut(s) 35, 52, 468, 590
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 4 cut(s) 35, 52, 468, 590
FaeI CATG 1 cut(s) 56
FaiI YATR 7 cut(s) 54, 96, 240, 281, 407, 457, 582
FaqI GGGAC 1 cut(s) 572
FatI CATG 1 cut(s) 52
FbaI TGATCA 1 cut(s) 282
FblI GTMKAC 1 cut(s) 239
FokI GGATG 1 cut(s) 555
FspBI CTAG 1 cut(s) 687
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 3 cut(s) 103, 446, 579
HapII CCGG 1 cut(s) 554
Hin1II CATG 1 cut(s) 56
HindIII AAGCTT 2 cut(s) 287, 607
HinfI GANTC 3 cut(s) 123, 539, 550
HpaII CCGG 1 cut(s) 554
HphI GGTGA 3 cut(s) 223, 664, 686
Hpy166II GTNNAC 2 cut(s) 240, 347
Hpy188I TCNGA 3 cut(s) 172, 381, 513
Hpy188III TCNNGA 2 cut(s) 140, 250
Hpy8I GTNNAC 2 cut(s) 240, 347
HpyAV CCTTC 2 cut(s) 5, 173
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4V TGCA 5 cut(s) 146, 329, 358, 374, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 452
HpyF3I CTNAG 4 cut(s) 363, 423, 528, 640
Hsp92II CATG 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 5 cut(s) 17, 127, 190, 274, 282
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 9 cut(s) 254, 281, 308, 324, 335, 336, 363, 567, 635
LweI GCATC 3 cut(s) 133, 192, 655
MaeI CTAG 1 cut(s) 687
MaeIII GTNAC 1 cut(s) 619
MalI GATC 5 cut(s) 19, 129, 192, 276, 284
MbiI CCGCTC 1 cut(s) 69
MboI GATC 5 cut(s) 17, 127, 190, 274, 282
MboII GAAGA 5 cut(s) 27, 94, 456, 674, 689
MluCI AATT 7 cut(s) 114, 215, 227, 244, 330, 369, 440
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 6 cut(s) 21, 204, 265, 410, 494, 652
Mph1103I ATGCAT 1 cut(s) 457
MseI TTAA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 3 cut(s) 269, 323, 351
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 3 cut(s) 269, 323, 351
MwoI GCNNNNNNNGC 2 cut(s) 443, 452
NcoI CCATGG 1 cut(s) 52
NdeII GATC 5 cut(s) 17, 127, 190, 274, 282
NlaIII CATG 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 472
NsiI ATGCAT 1 cut(s) 457
PasI CCCWGGG 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 539, 550
Pfl23II CGTACG 1 cut(s) 62
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PsiI TTATAA 1 cut(s) 407
Psp6I CCWGG 3 cut(s) 267, 321, 349
PspGI CCWGG 3 cut(s) 267, 321, 349
PspLI CGTACG 1 cut(s) 62
PspPI GGNCC 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 4 cut(s) 64, 266, 387, 545
RsaNI GTAC 4 cut(s) 63, 265, 386, 544
SaqAI TTAA 1 cut(s) 396
Sau3AI GATC 5 cut(s) 17, 127, 190, 274, 282
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 3 cut(s) 269, 323, 351
SfaNI GCATC 3 cut(s) 133, 192, 655
SinI GGWCC 1 cut(s) 293
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 7 cut(s) 114, 215, 227, 244, 330, 369, 440
SsiI CCGC 3 cut(s) 69, 435, 624
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 3 cut(s) 267, 321, 349
StyI CCWWGG 4 cut(s) 35, 52, 468, 590
TaaI ACNGT 1 cut(s) 586
TaqI TCGA 7 cut(s) 20, 126, 141, 177, 249, 300, 633
TasI AATT 7 cut(s) 114, 215, 227, 244, 330, 369, 440
TfiI GAWTC 2 cut(s) 539, 550
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TspDTI ATGAA 2 cut(s) 83, 95
TspGWI ACGGA 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 293
XagI CCTNNNNNAGG 1 cut(s) 159
XapI RAATTY 2 cut(s) 227, 244
XmiI GTMKAC 1 cut(s) 239
XspI CTAG 1 cut(s) 687
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.