Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007451.1

Orthogroup ID

OG0008449

Physical Location & Seq

Genomic Coordinates Reverse (-)

484 .. 2388

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007451.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgtcatccaacgcatcagccaccctccacttaaaccgcacgcccattctggaccgtcgatttcagctacgcggtctacgcaccctatttattgttccccattcccttcactccattcgcattgagagcaggaaactccaacacgacgtcgttgcgaccaaggccgtgccttttaaatcccccaccacctcccgcactagcggaactgacaagaacaccaacagcctcaacctttccgaaacgacaaggaggaacaccaacaccaacaccaacaccaacaacatgggaagcgagggttgtgccgcggcttctgattcgaggaaacccaggtttctttgccttcatgggtttcgaaccagcggtgtgatcatgaagacccaactgggtaaatggccggagtcggtgctcaacaatttcgacctggactttctcgatgggcctttcccggcccaaggtaaatccgaagtcgagggcattttcgatcctccttatcacgagtggttccaattcagcaaggatttttctgagtacacgaactttgacgagtgtcttgaattcattgaagattacatgatcaagaatggaccctttgatgggctacttggcttttcccagggggcaatactgtcagcggcactgccgggtctacaagcaaagggtttggcactgaccaaagtacctaaaattaaattcctcataataattggaggcgcaaaattcaagtcagcaaccgtggctgaaaatgcttattcatctcctattcaaattccgtctcttcactttttaggagaaacagacttcttgaagccatatggactcgaactgctagaaaactgtgtagatcctaccgtgattcatcatcccaagggccacacgataccacgactcgatgaaaagggtttagagaccattatgagcttcattgagacaattcagaagaagttggacgagaaggaggagcaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FSH1

Protein Analysis

322

Amino Acids

35.95

Weight (kDa)

6.8

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24380 AT4G24380 AT4G24380 AT4G24380 AT4G24380 AT4G24380
fragaria_vesca	FvH4_5g35950
malus_domestica	MD08G1191700.v1.1 MD15G1380500.v1.1
prunus_persica	Prupe.1G526700_v2.0.a1
pyrus_communis	pycom08g16520 pycom15g34080
rosa_chinensis	RchiOBHm_Chr7g0237691
rosa_laevigata	RLG00000000976
rosa_multiflora	Rmu_sc0007451.1_g000001 Rmu_ssc0000067.1_g000050
rosa_roxburghii	Rroxscaffold_3G00223870
rosa_rugosa	Rorug07G0306500
rosa_samantha	Rh7AG463000 Rh7BG433200 Rh7CG480000 Rh7DG449000
rosa_wichuraiana	Rw7G038300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	2 cut(s)	76, 646
AccII	CGCG	2 cut(s)	72, 305
AciI	CCGC	8 cut(s)	37, 72, 193, 201, 303, 305, 360, 632
AclWI	GGATC	2 cut(s)	476, 836
AcoI	YGGCCR	1 cut(s)	392
AcsI	RAATTY	4 cut(s)	554, 689, 716, 765
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	530, 678
AfiI	CCNNNNNNNGG	3 cut(s)	452, 593, 594
AgsI	TTSAA	5 cut(s)	554, 563, 721, 764, 805
AjnI	CCWGG	3 cut(s)	326, 420, 612
AluBI	AGCT	2 cut(s)	67, 918
AluI	AGCT	2 cut(s)	67, 918
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	3 cut(s)	777, 899, 920
AlwI	GGATC	2 cut(s)	476, 836
AoxI	GGCC	5 cut(s)	162, 392, 437, 447, 868
ApoI	RAATTY	4 cut(s)	554, 689, 716, 765
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	5 cut(s)	52, 437, 448, 584, 868
AsuC2I	CCSGG	2 cut(s)	446, 642
AsuII	TTCGAA	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	52, 584
BaeI	ACNNNNGTAYC	2 cut(s)	660, 693
BauI	CACGAG	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	408
BccI	CCATC	2 cut(s)	428, 587
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	4 cut(s)	134, 168, 281, 315
BciT130I	CCWGG	3 cut(s)	328, 422, 614
BclI	TGATCA	2 cut(s)	366, 573
BcnI	CCSGG	2 cut(s)	446, 642
BcoDI	GTCTC	3 cut(s)	777, 899, 920
BfaI	CTAG	2 cut(s)	198, 827
BisI	GCNGC	3 cut(s)	303, 306, 633
BlsI	GCNGC	3 cut(s)	304, 307, 634
Bme1390I	CCNGG	5 cut(s)	328, 422, 446, 614, 642
Bme18I	GGWCC	2 cut(s)	52, 584
BmgT120I	GGNCC	5 cut(s)	52, 437, 448, 584, 868
BmiI	GGNNCC	2 cut(s)	503, 586
BmrFI	CCNGG	5 cut(s)	328, 422, 446, 614, 642
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	392
BoxI	GACNNNNGTC	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	352
BpuMI	CCSGG	2 cut(s)	446, 642
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	899
BsaJI	CCNNGG	8 cut(s)	159, 303, 326, 451, 612, 613, 732, 864
BsaXI	ACNNNNNCTCC	1 cut(s)	950
Bsc4I	CCNNNNNNNGG	3 cut(s)	452, 593, 594
Bse1I	ACTGG	1 cut(s)	387
BseBI	CCWGG	3 cut(s)	328, 422, 614
BseDI	CCNNGG	8 cut(s)	159, 303, 326, 451, 612, 613, 732, 864
BseGI	GGATG	2 cut(s)	5, 859
BseLI	CCNNNNNNNGG	3 cut(s)	452, 593, 594
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	387
Bsh1236I	CGCG	2 cut(s)	72, 305
BshFI	GGCC	5 cut(s)	164, 394, 439, 449, 870
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	3 cut(s)	395, 446, 641
BslI	CCNNNNNNNGG	3 cut(s)	452, 593, 594
BsmAI	GTCTC	3 cut(s)	777, 899, 920
BsmBI	CGTCTC	1 cut(s)	777
BsnI	GGCC	5 cut(s)	164, 394, 439, 449, 870
Bso31I	GGTCTC	1 cut(s)	899
Bsp119I	TTCGAA	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	4 cut(s)	366, 481, 573, 841
BspACI	CCGC	8 cut(s)	37, 72, 193, 201, 303, 305, 360, 632
BspANI	GGCC	5 cut(s)	164, 394, 439, 449, 870
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	2 cut(s)	72, 305
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	503, 586
BspPI	GGATC	2 cut(s)	476, 836
BspT104I	TTCGAA	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	899
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	8 cut(s)	159, 303, 326, 451, 612, 613, 732, 864
BssMI	GATC	4 cut(s)	366, 481, 573, 841
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	494
BssT1I	CCWWGG	3 cut(s)	159, 451, 864
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	3 cut(s)	328, 422, 614
Bst4CI	ACNGT	6 cut(s)	56, 627, 733, 836, 850, 966
Bst6I	CTCTTC	1 cut(s)	780
BstACI	GRCGYC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	2 cut(s)	303, 732
BstF5I	GGATG	2 cut(s)	5, 859
BstFNI	CGCG	2 cut(s)	72, 305
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	4 cut(s)	369, 484, 576, 844
BstMAI	GTCTC	3 cut(s)	777, 899, 920
BstMBI	GATC	4 cut(s)	366, 481, 573, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 126, 161, 734, 743
BstNI	CCWGG	3 cut(s)	328, 422, 614
BstPAI	GACNNNNGTC	1 cut(s)	546
BstSCI	CCNGG	5 cut(s)	326, 420, 444, 612, 640
BstUI	CGCG	2 cut(s)	72, 305
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	841
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	841
BsuRI	GGCC	5 cut(s)	164, 394, 439, 449, 870
BtgI	CCRYGG	2 cut(s)	303, 732
BtsCI	GGATG	2 cut(s)	5, 859
BtsI	GCAGTG	1 cut(s)	635
BtsIMutI	CAGTG	2 cut(s)	635, 665
Cac8I	GCNNGC	1 cut(s)	41
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	5 cut(s)	52, 437, 448, 584, 868
Cfr42I	CCGCGG	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	529, 677
CviAII	CATG	4 cut(s)	283, 344, 370, 571
CviQI	GTAC	2 cut(s)	529, 677
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	4 cut(s)	368, 483, 575, 843
DpnII	GATC	4 cut(s)	366, 481, 573, 841
DraI	TTTAAA	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Eco130I	CCWWGG	3 cut(s)	159, 451, 864
Eco31I	GGTCTC	1 cut(s)	899
Eco47I	GGWCC	2 cut(s)	52, 584
EcoRI	GAATTC	1 cut(s)	554
EcoRII	CCWGG	3 cut(s)	326, 420, 612
EcoT14I	CCWWGG	3 cut(s)	159, 451, 864
ErhI	CCWWGG	3 cut(s)	159, 451, 864
Esp3I	CGTCTC	1 cut(s)	777
FaeI	CATG	4 cut(s)	286, 347, 373, 574
FaiI	YATR	8 cut(s)	284, 345, 371, 572, 698, 811, 813, 914
FatI	CATG	4 cut(s)	282, 343, 369, 570
FauI	CCCGC	1 cut(s)	200
FauNDI	CATATG	1 cut(s)	811
FbaI	TGATCA	2 cut(s)	366, 573
FblI	GTMKAC	2 cut(s)	76, 646
Fnu4HI	GCNGC	3 cut(s)	303, 306, 633
FokI	GGATG	1 cut(s)	846
Fsp4HI	GCNGC	3 cut(s)	303, 306, 633
FspBI	CTAG	2 cut(s)	198, 827
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	3 cut(s)	303, 306, 633
HaeIII	GGCC	5 cut(s)	164, 394, 439, 449, 870
HapII	CCGG	3 cut(s)	395, 446, 641
HhaI	GCGC	1 cut(s)	713
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	286, 347, 373, 574
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HinfI	GANTC	5 cut(s)	314, 398, 816, 853, 885
HpaII	CCGG	3 cut(s)	395, 446, 641
Hpy166II	GTNNAC	3 cut(s)	77, 531, 647
Hpy188I	TCNGA	5 cut(s)	238, 313, 463, 526, 936
Hpy188III	TCNNGA	7 cut(s)	50, 370, 431, 494, 551, 577, 802
Hpy8I	GTNNAC	3 cut(s)	77, 531, 647
Hpy99I	CGWCG	3 cut(s)	60, 149, 152
HpyAV	CCTTC	3 cut(s)	116, 350, 946
HpyCH4III	ACNGT	6 cut(s)	56, 627, 733, 836, 850, 966
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 126, 161, 734, 743
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	286, 347, 373, 574
HspAI	GCGC	1 cut(s)	711
Ksp22I	TGATCA	2 cut(s)	366, 573
KspI	CCGCGG	1 cut(s)	306
Kzo9I	GATC	4 cut(s)	366, 481, 573, 841
LmnI	GCTCC	1 cut(s)	958
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	198, 827
MaeII	ACGT	1 cut(s)	147
MalI	GATC	4 cut(s)	368, 483, 575, 843
MboI	GATC	4 cut(s)	366, 481, 573, 841
MboII	GAAGA	4 cut(s)	385, 575, 767, 949
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	9 cut(s)	412, 506, 554, 684, 689, 702, 716, 765, 930
MlyI	GAGTC	3 cut(s)	407, 810, 879
MmeI	TCCRAC	3 cut(s)	33, 163, 924
MseI	TTAA	3 cut(s)	32, 174, 687
MspA1I	CMGCKG	3 cut(s)	305, 360, 632
MspI	CCGG	3 cut(s)	395, 446, 641
MspR9I	CCNGG	5 cut(s)	328, 422, 446, 614, 642
MvaI	CCWGG	3 cut(s)	328, 422, 614
MvnI	CGCG	2 cut(s)	72, 305
MwoI	GCNNNNNNNGC	5 cut(s)	78, 126, 161, 734, 743
NciI	CCSGG	2 cut(s)	446, 642
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	4 cut(s)	366, 481, 573, 841
NlaIII	CATG	4 cut(s)	286, 347, 373, 574
NlaIV	GGNNCC	2 cut(s)	503, 586
NspV	TTCGAA	1 cut(s)	352
PagI	TCATGA	1 cut(s)	369
PasI	CCCWGGG	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	314, 853
PkrI	GCNGC	3 cut(s)	304, 307, 634
PleI	GAGTC	3 cut(s)	406, 810, 879
PpsI	GAGTC	3 cut(s)	406, 810, 879
PshAI	GACNNNNGTC	1 cut(s)	546
Psp6I	CCWGG	3 cut(s)	326, 420, 612
PspGI	CCWGG	3 cut(s)	326, 420, 612
PspN4I	GGNNCC	2 cut(s)	503, 586
PspPI	GGNCC	5 cut(s)	52, 437, 448, 584, 868
PsuI	RGATCY	1 cut(s)	841
RsaI	GTAC	2 cut(s)	530, 678
RsaNI	GTAC	2 cut(s)	529, 677
SacII	CCGCGG	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	32, 174, 687
SatI	GCNGC	3 cut(s)	303, 306, 633
Sau3AI	GATC	4 cut(s)	366, 481, 573, 841
Sau96I	GGNCC	5 cut(s)	52, 437, 448, 584, 868
SchI	GAGTC	3 cut(s)	407, 810, 879
ScrFI	CCNGG	5 cut(s)	328, 422, 446, 614, 642
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	9 cut(s)	69, 150, 191, 234, 332, 423, 457, 682, 920
SfaNI	GCATC	1 cut(s)	23
Sfr303I	CCGCGG	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	52, 584
Sse9I	AATT	9 cut(s)	412, 506, 554, 684, 689, 702, 716, 765, 930
SsiI	CCGC	8 cut(s)	37, 72, 193, 201, 303, 305, 360, 632
SspMI	CTAG	2 cut(s)	198, 827
StyD4I	CCNGG	5 cut(s)	326, 420, 444, 612, 640
StyI	CCWWGG	3 cut(s)	159, 451, 864
TaaI	ACNGT	6 cut(s)	56, 627, 733, 836, 850, 966
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	9 cut(s)	58, 317, 352, 417, 432, 468, 480, 819, 888
TasI	AATT	9 cut(s)	412, 506, 554, 684, 689, 702, 716, 765, 930
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	3 cut(s)	305, 308, 635
TfiI	GAWTC	2 cut(s)	314, 853
Tru1I	TTAA	3 cut(s)	32, 174, 687
Tru9I	TTAA	3 cut(s)	32, 174, 687
TscAI	CASTG	2 cut(s)	642, 672
TspDTI	ATGAA	7 cut(s)	332, 386, 547, 741, 845, 906, 910
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	2 cut(s)	642, 672
VpaK11BI	GGWCC	2 cut(s)	52, 584
XapI	RAATTY	4 cut(s)	554, 689, 716, 765
XmiI	GTMKAC	2 cut(s)	76, 646
XspI	CTAG	2 cut(s)	198, 827
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.