Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000067.1

Orthogroup ID

OG0008449

Physical Location & Seq

Genomic Coordinates Forward (+)

190332 .. 191078

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000067.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgtcatccaacgcatcatccaccctccacttaaaccgcacgcccattctggaccgtcgatttcagctacgcggtctacgcaccctatttattgttccccattcccttcaccccattcgcattgagagcaggaaactccaacacgacgtcgttgcgaccaaggccgtgccttttaaatcccccaccacctcccgcactagcggaactgacaagaacaccaacagcctcaacctttccgaaacgacaaggaggaacaccaacgccaacactaacaacatgggaagcgagggttgtgccgcggcttctgattcggggaaacccaggtttctttgccttcaggggtttcgaaccagcggtgtgatcatgaagactcaaatgcgtaaatggccggagtcggtgctcaacaatttcgacctggactttctcgatgggccgttcccggcccaaggtaaatccgaagtcgagggcattttcgatcctccttatcacgagtggttccaattcagcaaggatttttctgagtacacgaactttgacgagtgtcttgaattcattgaagattacatgatcaagaatggaccctttgatgggctacttggcttttcccaggtatttttctacttattagcgctttattctcttcctgggttcctcaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FSH1

Protein Analysis

220

Amino Acids

24.97

Weight (kDa)

8.42

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24380 AT4G24380 AT4G24380 AT4G24380 AT4G24380 AT4G24380
fragaria_vesca	FvH4_5g35950
malus_domestica	MD08G1191700.v1.1 MD15G1380500.v1.1
prunus_persica	Prupe.1G526700_v2.0.a1
pyrus_communis	pycom08g16520 pycom15g34080
rosa_chinensis	RchiOBHm_Chr7g0237691
rosa_laevigata	RLG00000000976
rosa_multiflora	Rmu_sc0007451.1_g000001 Rmu_ssc0000067.1_g000050
rosa_roxburghii	Rroxscaffold_3G00223870
rosa_rugosa	Rorug07G0306500
rosa_samantha	Rh7AG463000 Rh7BG433200 Rh7CG480000 Rh7DG449000
rosa_wichuraiana	Rw7G038300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	76
AccII	CGCG	2 cut(s)	72, 299
AciI	CCGC	7 cut(s)	37, 72, 193, 201, 297, 299, 354
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	386
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	524
AfeI	AGCGCT	1 cut(s)	630
AfiI	CCNNNNNNNGG	3 cut(s)	446, 587, 588
AgsI	TTSAA	2 cut(s)	548, 557
AjnI	CCWGG	4 cut(s)	320, 414, 606, 643
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	470
Aor51HI	AGCGCT	1 cut(s)	630
AoxI	GGCC	4 cut(s)	162, 386, 431, 441
ApoI	RAATTY	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	4 cut(s)	52, 431, 442, 578
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	101
AsuII	TTCGAA	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	52, 578
BauI	CACGAG	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	402
BccI	CCATC	2 cut(s)	422, 581
BceAI	ACGGC	2 cut(s)	149, 418
BcgI	CGANNNNNNTGC	4 cut(s)	134, 168, 275, 309
BciT130I	CCWGG	4 cut(s)	322, 416, 608, 645
BclI	TGATCA	2 cut(s)	360, 567
BcnI	CCSGG	1 cut(s)	440
BfaI	CTAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	632
BisI	GCNGC	2 cut(s)	297, 300
BlsI	GCNGC	2 cut(s)	298, 301
Bme1390I	CCNGG	5 cut(s)	322, 416, 440, 608, 645
Bme18I	GGWCC	2 cut(s)	52, 578
BmgT120I	GGNCC	4 cut(s)	52, 431, 442, 578
BmiI	GGNNCC	3 cut(s)	497, 580, 650
BmrFI	CCNGG	5 cut(s)	322, 416, 440, 608, 645
BmsI	GCATC	1 cut(s)	23
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	6 cut(s)	159, 297, 320, 445, 606, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 587, 588
BseBI	CCWGG	4 cut(s)	322, 416, 608, 645
BseDI	CCNNGG	6 cut(s)	159, 297, 320, 445, 606, 644
BseGI	GGATG	2 cut(s)	5, 17
BseLI	CCNNNNNNNGG	3 cut(s)	446, 587, 588
BseMII	CTCAG	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	72, 299
BshFI	GGCC	4 cut(s)	164, 388, 433, 443
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	2 cut(s)	389, 440
BslI	CCNNNNNNNGG	3 cut(s)	446, 587, 588
BsnI	GGCC	4 cut(s)	164, 388, 433, 443
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	3 cut(s)	360, 475, 567
BspACI	CCGC	7 cut(s)	37, 72, 193, 201, 297, 299, 354
BspANI	GGCC	4 cut(s)	164, 388, 433, 443
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	2 cut(s)	72, 299
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	3 cut(s)	497, 580, 650
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	346
BssECI	CCNNGG	6 cut(s)	159, 297, 320, 445, 606, 644
BssMI	GATC	3 cut(s)	360, 475, 567
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	488
BssT1I	CCWWGG	2 cut(s)	159, 445
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	4 cut(s)	322, 416, 608, 645
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	645
BstACI	GRCGYC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	5, 17
BstFNI	CGCG	2 cut(s)	72, 299
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	3 cut(s)	363, 478, 570
BstMBI	GATC	3 cut(s)	360, 475, 567
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 126, 161, 385
BstNI	CCWGG	4 cut(s)	322, 416, 608, 645
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	5 cut(s)	320, 414, 438, 606, 643
BstUI	CGCG	2 cut(s)	72, 299
BstV2I	GAAGAC	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	164, 388, 433, 443
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	5, 17
Cac8I	GCNNGC	1 cut(s)	41
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	4 cut(s)	52, 431, 442, 578
Cfr42I	CCGCGG	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	3 cut(s)	277, 364, 565
CviJI	RGCY	9 cut(s)	67, 164, 225, 302, 388, 433, 443, 592, 600
CviKI_1	RGCY	9 cut(s)	67, 164, 225, 302, 388, 433, 443, 592, 600
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	3 cut(s)	362, 477, 569
DpnII	GATC	3 cut(s)	360, 475, 567
DraI	TTTAAA	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	159, 445
Eco47I	GGWCC	2 cut(s)	52, 578
Eco47III	AGCGCT	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	4 cut(s)	320, 414, 606, 643
EcoT14I	CCWWGG	2 cut(s)	159, 445
ErhI	CCWWGG	2 cut(s)	159, 445
FaeI	CATG	3 cut(s)	280, 367, 568
FaiI	YATR	3 cut(s)	278, 365, 566
FatI	CATG	3 cut(s)	276, 363, 564
FauI	CCCGC	1 cut(s)	200
FbaI	TGATCA	2 cut(s)	360, 567
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	297, 300
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	2 cut(s)	297, 300
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	2 cut(s)	297, 300
HaeII	RGCGCY	1 cut(s)	632
HaeIII	GGCC	4 cut(s)	164, 388, 433, 443
HapII	CCGG	2 cut(s)	389, 440
HhaI	GCGC	1 cut(s)	631
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	280, 367, 568
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HinfI	GANTC	3 cut(s)	308, 370, 392
HpaII	CCGG	2 cut(s)	389, 440
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	77, 525
Hpy188I	TCNGA	4 cut(s)	238, 307, 457, 520
Hpy188III	TCNNGA	7 cut(s)	50, 364, 425, 488, 545, 571, 655
Hpy8I	GTNNAC	2 cut(s)	77, 525
Hpy99I	CGWCG	3 cut(s)	60, 149, 152
HpyAV	CCTTC	2 cut(s)	116, 344
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 126, 161, 385
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	280, 367, 568
HspAI	GCGC	1 cut(s)	629
Ksp22I	TGATCA	2 cut(s)	360, 567
KspI	CCGCGG	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	360, 475, 567
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	147
MalI	GATC	3 cut(s)	362, 477, 569
MboI	GATC	3 cut(s)	360, 475, 567
MboII	GAAGA	3 cut(s)	379, 569, 632
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	3 cut(s)	406, 500, 548
MlyI	GAGTC	2 cut(s)	364, 401
MmeI	TCCRAC	2 cut(s)	33, 163
MnlI	CCTC	8 cut(s)	35, 199, 236, 243, 280, 457, 489, 662
MseI	TTAA	2 cut(s)	32, 174
MspA1I	CMGCKG	2 cut(s)	299, 354
MspI	CCGG	2 cut(s)	389, 440
MspR9I	CCNGG	5 cut(s)	322, 416, 440, 608, 645
MvaI	CCWGG	4 cut(s)	322, 416, 608, 645
MvnI	CGCG	2 cut(s)	72, 299
MwoI	GCNNNNNNNGC	4 cut(s)	78, 126, 161, 385
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	3 cut(s)	360, 475, 567
NlaIII	CATG	3 cut(s)	280, 367, 568
NlaIV	GGNNCC	3 cut(s)	497, 580, 650
NspV	TTCGAA	1 cut(s)	346
PagI	TCATGA	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	298, 301
PleI	GAGTC	2 cut(s)	364, 400
PpsI	GAGTC	2 cut(s)	364, 400
PshAI	GACNNNNGTC	1 cut(s)	540
Psp6I	CCWGG	4 cut(s)	320, 414, 606, 643
PspGI	CCWGG	4 cut(s)	320, 414, 606, 643
PspN4I	GGNNCC	3 cut(s)	497, 580, 650
PspPI	GGNCC	4 cut(s)	52, 431, 442, 578
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SacII	CCGCGG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	32, 174
SatI	GCNGC	2 cut(s)	297, 300
Sau3AI	GATC	3 cut(s)	360, 475, 567
Sau96I	GGNCC	4 cut(s)	52, 431, 442, 578
SchI	GAGTC	2 cut(s)	364, 401
ScrFI	CCNGG	5 cut(s)	322, 416, 440, 608, 645
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	8 cut(s)	69, 150, 191, 234, 326, 417, 451, 612
SfaNI	GCATC	1 cut(s)	23
Sfr303I	CCGCGG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	346
SgrBI	CCGCGG	1 cut(s)	300
SinI	GGWCC	2 cut(s)	52, 578
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	3 cut(s)	406, 500, 548
SsiI	CCGC	7 cut(s)	37, 72, 193, 201, 297, 299, 354
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	5 cut(s)	320, 414, 438, 606, 643
StyI	CCWWGG	2 cut(s)	159, 445
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	6 cut(s)	58, 346, 411, 426, 462, 474
TasI	AATT	3 cut(s)	406, 500, 548
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	2 cut(s)	299, 302
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	32, 174
Tru9I	TTAA	2 cut(s)	32, 174
TspDTI	ATGAA	2 cut(s)	380, 541
VpaK11BI	GGWCC	2 cut(s)	52, 578
XapI	RAATTY	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	1 cut(s)	198
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.