Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008449

Physical Location & Seq

Genomic Coordinates Forward (+)

33677028 .. 33678835

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGACGTCATCTGGCACATCAAACACCGTGGTCGTTTACATTGAATTTGACCGAGCGAGATTTCCACCCGACGTCGTCAATGTCAAAACTGCCCTCCAACCTGCTCCTTTTAAATCCAGCCAAATTACACACGCATTCCATCCCTCCTCCCACACTACCGGAGCTGCCGAGAAGAACAACAAAAGCCTCGTCGACCGGTGGGAATATTCTTCCTCTCCTTATTATCTCCGAAAAACAGCAGAAAACATGGGGAGCCAAGGAAGCGGAGAAGGCGGCGGGTGTTCGAGGAAGCCCAGGTTTCTGTGCCTCCATGGGTTCCGAACGAGCGGGGAAATAATGAGGAAGCAAGTGGGCAAGTGGCCGGAATCGGTGCTCGAGAAGCTCGACATGGTTTATCTCGATGGGCCCTTTCCGGCCCAAGGTAAATCCGACGTCGACGGCATTTTTGATCCTCCTTATTACGAGTGGTTCCAATTCAACCAGGAATTTTCAGCGTACACGAACTTTGATAAGTGTCTGGAATACATAGAAGATTACATGATTAAACAGGGACCGTTCGACGGCCTTGTTGGTTTTTCCCAGGGAGCAATACTGTCGGCGGGTCTGCCGGGGCTGCAAGCGAAGGGTGTGGCATTGACTAAAGTTCCCAAAATTAAATTCCTGATAATAATCGGAGGGGCGAAATTCAAGTCACCGGCGGTGGCTGAGGATGCTTATTCGTCTCCCATTCAGTGCCCGTCCCTTCACTTTTTAGGGGAGATGGATTTCTTGAAGCCGTACGGGCTTCAACTGTTGGAACACTGTGTAGATGCTTCGGTGATTCATCATCCAAAAGGCCACACTGTTCCAAGACTTGATGAAAAGGGTTTGGATACGATGATGAACTTCATCGACAAGATTCAGAACATATTGGCGGACAAAGACCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FSH1

Protein Analysis

311

Amino Acids

34.42

Weight (kDa)

6.31

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24380 AT4G24380 AT4G24380 AT4G24380 AT4G24380 AT4G24380
fragaria_vesca	FvH4_5g35950
malus_domestica	MD08G1191700.v1.1 MD15G1380500.v1.1
prunus_persica	Prupe.1G526700_v2.0.a1
pyrus_communis	pycom08g16520 pycom15g34080
rosa_chinensis	RchiOBHm_Chr7g0237691
rosa_laevigata	RLG00000000976
rosa_multiflora	Rmu_sc0007451.1_g000001 Rmu_ssc0000067.1_g000050
rosa_roxburghii	Rroxscaffold_3G00223870
rosa_rugosa	Rorug07G0306500
rosa_samantha	Rh7AG463000 Rh7BG433200 Rh7CG480000 Rh7DG449000
rosa_wichuraiana	Rw7G038300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	8, 75, 435
Acc36I	ACCTGC	1 cut(s)	109
AccBSI	CCGCTC	1 cut(s)	327
AccI	GTMKAC	2 cut(s)	192, 435
AciI	CCGC	7 cut(s)	264, 273, 276, 327, 599, 698, 914
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	4 cut(s)	44, 485, 656, 683
AcyI	GRCGYC	3 cut(s)	5, 72, 432
AfaI	GTAC	2 cut(s)	497, 779
AfiI	CCNNNNNNNGG	2 cut(s)	419, 560
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	44, 478, 688, 772, 788
AjnI	CCWGG	3 cut(s)	293, 480, 579
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	2 cut(s)	164, 382
AluI	AGCT	2 cut(s)	164, 382
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	5 cut(s)	359, 404, 414, 562, 835
ApaI	GGGCCC	1 cut(s)	408
ApeKI	GCWGC	2 cut(s)	164, 613
ApoI	RAATTY	4 cut(s)	44, 485, 656, 683
ArsI	GACNNNNNNTTYG	6 cut(s)	174, 206, 428, 460, 674, 706
AsiGI	ACCGGT	1 cut(s)	195
AspS9I	GGNCC	4 cut(s)	404, 405, 415, 551
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	684, 829
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	2 cut(s)	408, 737
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	2 cut(s)	151, 600
BccI	CCATC	3 cut(s)	147, 395, 754
BceAI	ACGGC	3 cut(s)	454, 577, 760
BcgI	CGANNNNNNTGC	2 cut(s)	576, 610
BciT130I	CCWGG	3 cut(s)	295, 482, 581
BciVI	GTATCC	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	865
BglI	GCCNNNNNGGC	1 cut(s)	781
BisI	GCNGC	3 cut(s)	165, 274, 614
BlsI	GCNGC	3 cut(s)	166, 275, 615
Bme1390I	CCNGG	4 cut(s)	295, 482, 581, 609
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	4 cut(s)	404, 405, 415, 551
BmiI	GGNNCC	5 cut(s)	254, 317, 406, 470, 552
BmrFI	CCNGG	4 cut(s)	295, 482, 581, 609
BmsI	GCATC	2 cut(s)	700, 799
Bpu10I	CCTNAGC	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	668
BsaHI	GRCGYC	3 cut(s)	5, 72, 432
BsaJI	CCNNGG	8 cut(s)	27, 256, 293, 310, 418, 579, 580, 608
BsaWI	WCCGGW	2 cut(s)	158, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 560
Bse118I	RCCGGY	2 cut(s)	195, 694
Bse8I	GATNNNNATC	1 cut(s)	668
BseBI	CCWGG	3 cut(s)	295, 482, 581
BseDI	CCNNGG	8 cut(s)	27, 256, 293, 310, 418, 579, 580, 608
BseGI	GGATG	3 cut(s)	139, 715, 826
BseJI	GATNNNNATC	1 cut(s)	668
BseLI	CCNNNNNNNGG	2 cut(s)	419, 560
BseMII	CTCAG	1 cut(s)	696
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	2 cut(s)	408, 737
BseXI	GCAGC	2 cut(s)	151, 600
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	5 cut(s)	361, 406, 416, 564, 837
BshTI	ACCGGT	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	6 cut(s)	159, 196, 362, 413, 608, 695
BsiWI	CGTACG	1 cut(s)	777
BslFI	GGGAC	2 cut(s)	564, 724
BslI	CCNNNNNNNGG	2 cut(s)	419, 560
BsmAI	GTCTC	1 cut(s)	726
BsmBI	CGTCTC	1 cut(s)	726
BsmFI	GGGAC	2 cut(s)	564, 724
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	5 cut(s)	361, 406, 416, 564, 837
BsoBI	CYCGRG	1 cut(s)	374
Bsp120I	GGGCCC	1 cut(s)	404
Bsp1286I	GDGCHC	3 cut(s)	375, 408, 737
Bsp143I	GATC	1 cut(s)	448
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	7 cut(s)	264, 273, 276, 327, 599, 698, 914
BspANI	GGCC	5 cut(s)	361, 406, 416, 564, 837
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	5 cut(s)	254, 317, 406, 470, 552
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	327
BsrFI	RCCGGY	2 cut(s)	195, 694
BssAI	RCCGGY	2 cut(s)	195, 694
BssECI	CCNNGG	8 cut(s)	27, 256, 293, 310, 418, 579, 580, 608
BssMI	GATC	1 cut(s)	448
BssNI	GRCGYC	3 cut(s)	5, 72, 432
BssT1I	CCWWGG	3 cut(s)	256, 310, 418
Bst2UI	CCWGG	3 cut(s)	295, 482, 581
Bst4CI	ACNGT	7 cut(s)	28, 555, 594, 792, 803, 844, 930
BstACI	GRCGYC	3 cut(s)	5, 72, 432
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	705
BstDSI	CCRYGG	2 cut(s)	27, 310
BstF5I	GGATG	3 cut(s)	139, 715, 826
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	1 cut(s)	448
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 270, 379, 613, 710, 781
BstNI	CCWGG	3 cut(s)	295, 482, 581
BstSCI	CCNGG	4 cut(s)	293, 480, 579, 607
BstSLI	GKGCMC	2 cut(s)	408, 737
BstV1I	GCAGC	2 cut(s)	151, 600
BsuI	GTATCC	1 cut(s)	865
BsuRI	GGCC	5 cut(s)	361, 406, 416, 564, 837
BtgI	CCRYGG	2 cut(s)	27, 310
BtsCI	GGATG	3 cut(s)	139, 715, 826
BtsIMutI	CAGTG	3 cut(s)	737, 799, 840
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	618
Cfr10I	RCCGGY	2 cut(s)	195, 694
Cfr13I	GGNCC	4 cut(s)	404, 405, 415, 551
Csp6I	GTAC	2 cut(s)	496, 778
CspAI	ACCGGT	1 cut(s)	195
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	4 cut(s)	247, 311, 388, 538
CviQI	GTAC	2 cut(s)	496, 778
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DraI	TTTAAA	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	359
EciI	GGCGGA	1 cut(s)	929
Eco130I	CCWWGG	3 cut(s)	256, 310, 418
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRII	CCWGG	3 cut(s)	293, 480, 579
EcoT14I	CCWWGG	3 cut(s)	256, 310, 418
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	3 cut(s)	256, 310, 418
Esp3I	CGTCTC	1 cut(s)	726
FaeI	CATG	4 cut(s)	250, 314, 391, 541
FaiI	YATR	6 cut(s)	248, 312, 389, 527, 539, 908
FaqI	GGGAC	2 cut(s)	564, 724
FatI	CATG	4 cut(s)	246, 310, 387, 537
FauI	CCCGC	3 cut(s)	269, 320, 592
FblI	GTMKAC	2 cut(s)	192, 435
Fnu4HI	GCNGC	3 cut(s)	165, 274, 614
FokI	GGATG	3 cut(s)	126, 722, 813
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	165, 274, 614
GluI	GCNGC	3 cut(s)	165, 274, 614
HaeIII	GGCC	5 cut(s)	361, 406, 416, 564, 837
HapII	CCGG	6 cut(s)	159, 196, 362, 413, 608, 695
Hin1I	GRCGYC	3 cut(s)	5, 72, 432
Hin1II	CATG	4 cut(s)	250, 314, 391, 541
HincII	GTYRAC	2 cut(s)	193, 436
HindII	GTYRAC	2 cut(s)	193, 436
HinfI	GANTC	3 cut(s)	365, 820, 898
HpaII	CCGG	6 cut(s)	159, 196, 362, 413, 608, 695
HphI	GGTGA	2 cut(s)	684, 829
Hpy166II	GTNNAC	4 cut(s)	37, 193, 436, 498
Hpy188I	TCNGA	5 cut(s)	230, 320, 430, 674, 903
Hpy188III	TCNNGA	5 cut(s)	376, 398, 518, 661, 769
Hpy8I	GTNNAC	4 cut(s)	37, 193, 436, 498
Hpy99I	CGWCG	7 cut(s)	74, 77, 194, 434, 437, 440, 563
HpyAV	CCTTC	3 cut(s)	263, 616, 752
HpyCH4III	ACNGT	7 cut(s)	28, 555, 594, 792, 803, 844, 930
HpyCH4IV	ACGT	3 cut(s)	5, 72, 432
HpyCH4V	TGCA	1 cut(s)	616
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 270, 379, 613, 710, 781
HpyF3I	CTNAG	1 cut(s)	705
HpySE526I	ACGT	3 cut(s)	5, 72, 432
Hsp92I	GRCGYC	3 cut(s)	5, 72, 432
Hsp92II	CATG	4 cut(s)	250, 314, 391, 541
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	4 cut(s)	109, 161, 252, 584
Lsp1109I	GCAGC	2 cut(s)	151, 600
LweI	GCATC	2 cut(s)	700, 799
MaeII	ACGT	3 cut(s)	5, 72, 432
MaeIII	GTNAC	1 cut(s)	690
MalI	GATC	1 cut(s)	450
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	1 cut(s)	448
MboII	GAAGA	3 cut(s)	184, 201, 542
MhlI	GDGCHC	3 cut(s)	375, 408, 737
MluCI	AATT	7 cut(s)	44, 123, 473, 485, 651, 656, 683
MmeI	TCCRAC	3 cut(s)	121, 453, 774
MseI	TTAA	3 cut(s)	111, 543, 654
MspI	CCGG	6 cut(s)	159, 196, 362, 413, 608, 695
MspR9I	CCNGG	4 cut(s)	295, 482, 581, 609
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	3 cut(s)	295, 482, 581
MwoI	GCNNNNNNNGC	6 cut(s)	261, 270, 379, 613, 710, 781
NciI	CCSGG	1 cut(s)	609
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	250, 314, 391, 541
NlaIV	GGNNCC	5 cut(s)	254, 317, 406, 470, 552
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	690
PaeR7I	CTCGAG	1 cut(s)	374
PasI	CCCWGGG	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	365, 820, 898
Pfl23II	CGTACG	1 cut(s)	777
PflFI	GACNNNGTC	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	166, 275, 615
Psp6I	CCWGG	3 cut(s)	293, 480, 579
PspGI	CCWGG	3 cut(s)	293, 480, 579
PspLI	CGTACG	1 cut(s)	777
PspN4I	GGNNCC	5 cut(s)	254, 317, 406, 470, 552
PspOMI	GGGCCC	1 cut(s)	404
PspPI	GGNCC	4 cut(s)	404, 405, 415, 551
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	2 cut(s)	497, 779
RsaNI	GTAC	2 cut(s)	496, 778
SalI	GTCGAC	2 cut(s)	191, 434
SaqAI	TTAA	3 cut(s)	111, 543, 654
SatI	GCNGC	3 cut(s)	165, 274, 614
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	4 cut(s)	404, 405, 415, 551
ScrFI	CCNGG	4 cut(s)	295, 482, 581, 609
SduI	GDGCHC	3 cut(s)	375, 408, 737
SetI	ASST	8 cut(s)	8, 75, 103, 166, 299, 384, 424, 435
SfaNI	GCATC	2 cut(s)	700, 799
Sfr274I	CTCGAG	1 cut(s)	374
SgrAI	CRCCGGYG	1 cut(s)	694
SgrDI	CGTCGACG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	7 cut(s)	44, 123, 473, 485, 651, 656, 683
SsiI	CCGC	7 cut(s)	264, 273, 276, 327, 599, 698, 914
SspI	AATATT	1 cut(s)	206
StyD4I	CCNGG	4 cut(s)	293, 480, 579, 607
StyI	CCWWGG	3 cut(s)	256, 310, 418
TaaI	ACNGT	7 cut(s)	28, 555, 594, 792, 803, 844, 930
TaiI	ACGT	3 cut(s)	8, 75, 435
TaqI	TCGA	8 cut(s)	192, 284, 375, 384, 399, 435, 558, 891
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	7 cut(s)	44, 123, 473, 485, 651, 656, 683
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	365, 820, 898
Tru1I	TTAA	3 cut(s)	111, 543, 654
Tru9I	TTAA	3 cut(s)	111, 543, 654
TscAI	CASTG	3 cut(s)	737, 806, 847
TseFI	GTSAC	1 cut(s)	690
TseI	GCWGC	2 cut(s)	164, 613
Tsp45I	GTSAC	1 cut(s)	690
TspDTI	ATGAA	4 cut(s)	812, 873, 877, 896
TspRI	CASTG	3 cut(s)	737, 806, 847
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	4 cut(s)	44, 485, 656, 683
XhoI	CTCGAG	1 cut(s)	374
XmiI	GTMKAC	2 cut(s)	192, 435
ZraI	GACGTC	3 cut(s)	6, 73, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.