AT4G26130

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011769
Physical Location & Seq
Reverse (-)
13239979 .. 13241537
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26130.1

Sequence Viewer

Length: 861 bp
ATGGAGCTACTCACAAGCTTGACCAACTGGTTAACTCCGACGACTCTCTTCCTCCTCCTCAATTTCACGATCGCCACCATTTTCATCACCAACCGGTTCAGTTCCTGTTCAAGAAAACACAACCAACATCAAGATGGTTACGGGTCGTCGGGTCATGACCAAAATCAGGCACGGTTTGGCAGACCTCCTTCGCTCATAGACAGAGTAAAGTCCATCAACTTCCATCTGTACAATTCTCCTTCACCAGAATCCGAGATCCACTACTCCGGGTCGGATCCTAACCCGAACCCACCTCCTTCTCTCTTGCAACGGGTCAAATCCATCAACATGCCTTACTTCAAGTTCCCACAACACAATTCTGAAGGAGATTACGCTGCTTACGAGCTCATGACCCAACCCGACGAGACTAACCGGGTCGACCCGATCGACAAGATCCCGGAGGATGACGTCACGACCGAACCTAGATTCGGAGCTCCATCACTCTTGCAGCGGGTGAAATCCATAAAGCTTCCTTCTTTATACAGATCCGACCCAGATCCAACACCAGAAGTGCAAACACATACGAGGACGAAGTCGGAGTCGAGTAAACCGGCGACGAAGAAGAAGAAGAAAGCTACAAAGAAGATGATGAAATCTGCTAGCGAGAGACACATCGGCCGGGAAGAGGAGGAGACAGTTGAGGCCGTGGAGAAGAGAAGGCCGGAGACGATGAGAGTTGAGAGAACGACGTCGATAGGAGACGGAGGAGAAGAAGGTGTCGACGATAAAGCTTCAAATTTCATCAACAAGTTTAAGCAACAGCTTAAGCTACAGAGGCTAGATTCGTTTCTAAGGTACAGAGAGATGCTCAAGAACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

286

Amino Acids

32.76

Weight (kDa)

8.95

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 3 - 33 3e-09 Domain of unknown function (DUF4408)
DUF761 PF05553 251 - 284 5.7e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26130 AT5G56980
fragaria_vesca FvH4_1g07560
malus_domestica MD02G1080400.v1.1 MD15G1207800.v1.1
prunus_persica Prupe.7G209100_v2.0.a1
pyrus_communis pycom15g18410
rosa_laevigata RLG00000016403
rosa_multiflora Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006
rosa_roxburghii Rroxscaffold_2G00148090
rosa_rugosa Rorug02G0036200 Rorug02G0036300
rosa_samantha Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400
rosa_wichuraiana Rw2G006470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 450, 731
AccI GTMKAC 2 cut(s) 417, 759
AciI CCGC 1 cut(s) 490
AclWI GGATC 6 cut(s) 250, 269, 282, 427, 519, 530
AcoI YGGCCR 1 cut(s) 655
AcsI RAATTY 1 cut(s) 775
AcuI CTGAAG 1 cut(s) 381
AcyI GRCGYC 2 cut(s) 447, 728
AfaI GTAC 2 cut(s) 230, 836
AfiI CCNNNNNNNGG 3 cut(s) 166, 467, 664
AflII CTTAAG 1 cut(s) 803
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 3 cut(s) 111, 340, 774
AluBI AGCT 9 cut(s) 7, 18, 385, 473, 508, 614, 770, 802, 808
AluI AGCT 9 cut(s) 7, 18, 385, 473, 508, 614, 770, 802, 808
Alw21I GWGCWC 2 cut(s) 387, 475
Alw26I GTCTC 5 cut(s) 398, 640, 665, 698, 732
AlwI GGATC 6 cut(s) 250, 269, 282, 427, 519, 530
AlwNI CAGNNNCTG 1 cut(s) 105
AoxI GGCC 3 cut(s) 655, 681, 698
ApeKI GCWGC 2 cut(s) 374, 487
ApoI RAATTY 1 cut(s) 775
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AsiGI ACCGGT 1 cut(s) 93
AsuC2I CCSGG 4 cut(s) 268, 413, 437, 659
AsuHPI GGTGA 3 cut(s) 79, 234, 505
AsuNHI GCTAGC 1 cut(s) 638
BamHI GGATCC 1 cut(s) 274
BanII GRGCYC 2 cut(s) 387, 475
Bbv12I GWGCWC 2 cut(s) 387, 475
BbvI GCAGC 2 cut(s) 361, 499
BccI CCATC 5 cut(s) 128, 221, 231, 329, 484
BceAI ACGGC 1 cut(s) 668
BcnI CCSGG 4 cut(s) 268, 413, 437, 659
BcoDI GTCTC 5 cut(s) 398, 640, 665, 698, 732
BfaI CTAG 3 cut(s) 462, 639, 818
BfmI CTRYAG 1 cut(s) 809
BfrI CTTAAG 1 cut(s) 803
BisI GCNGC 2 cut(s) 375, 488
BlsI GCNGC 2 cut(s) 376, 489
Bme1390I CCNGG 4 cut(s) 268, 413, 437, 659
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 4 cut(s) 268, 413, 437, 659
BmsI GCATC 1 cut(s) 834
BmtI GCTAGC 1 cut(s) 642
BplI GAGNNNNNCTC 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 4 cut(s) 268, 413, 437, 659
BsaHI GRCGYC 2 cut(s) 447, 728
BsaJI CCNNGG 1 cut(s) 684
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 467, 664
Bse118I RCCGGY 2 cut(s) 93, 589
Bse1I ACTGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 684
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 3 cut(s) 166, 467, 664
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 5 cut(s) 44, 47, 680, 683, 759
BseX3I CGGCCG 1 cut(s) 655
BseXI GCAGC 2 cut(s) 361, 499
Bsh1285I CGRYCG 4 cut(s) 72, 426, 456, 658
BshFI GGCC 3 cut(s) 657, 683, 700
BshTI ACCGGT 1 cut(s) 93
BsiEI CGRYCG 4 cut(s) 72, 426, 456, 658
BsiHKAI GWGCWC 2 cut(s) 387, 475
BsiSI CCGG 7 cut(s) 94, 267, 412, 437, 590, 658, 701
BslI CCNNNNNNNGG 3 cut(s) 166, 467, 664
BsmAI GTCTC 5 cut(s) 398, 640, 665, 698, 732
BsmBI CGTCTC 2 cut(s) 698, 732
BsnI GGCC 3 cut(s) 657, 683, 700
Bsp1286I GDGCHC 2 cut(s) 387, 475
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 7 cut(s) 69, 255, 274, 423, 432, 524, 535
BspACI CCGC 1 cut(s) 490
BspANI GGCC 3 cut(s) 657, 683, 700
BspHI TCATGA 2 cut(s) 154, 387
BspLI GGNNCC 1 cut(s) 276
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 6 cut(s) 250, 269, 282, 427, 519, 530
BspTI CTTAAG 1 cut(s) 803
BsrFI RCCGGY 2 cut(s) 93, 589
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 2 cut(s) 93, 589
BssECI CCNNGG 1 cut(s) 684
BssMI GATC 7 cut(s) 69, 255, 274, 423, 432, 524, 535
BssNI GRCGYC 2 cut(s) 447, 728
Bst4CI ACNGT 2 cut(s) 174, 676
Bst6I CTCTTC 3 cut(s) 53, 657, 686
BstACI GRCGYC 2 cut(s) 447, 728
BstAFI CTTAAG 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 1 cut(s) 830
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 7 cut(s) 72, 258, 277, 426, 435, 527, 538
BstMAI GTCTC 5 cut(s) 398, 640, 665, 698, 732
BstMBI GATC 7 cut(s) 69, 255, 274, 423, 432, 524, 535
BstMCI CGRYCG 4 cut(s) 72, 426, 456, 658
BstMWI GCNNNNNNNGC 1 cut(s) 814
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 4 cut(s) 266, 411, 435, 657
BstSFI CTRYAG 1 cut(s) 809
BstV1I GCAGC 2 cut(s) 361, 499
BstX2I RGATCY 5 cut(s) 255, 274, 432, 524, 535
BstYI RGATCY 5 cut(s) 255, 274, 432, 524, 535
BstZI CGGCCG 1 cut(s) 655
BsuRI GGCC 3 cut(s) 657, 683, 700
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 640
CaiI CAGNNNCTG 1 cut(s) 105
CciI TCATGA 2 cut(s) 154, 387
Cfr10I RCCGGY 2 cut(s) 93, 589
Csp6I GTAC 2 cut(s) 229, 835
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 3 cut(s) 155, 328, 388
CviQI GTAC 2 cut(s) 229, 835
DdeI CTNAG 1 cut(s) 830
DpnI GATC 7 cut(s) 71, 257, 276, 425, 434, 526, 537
DpnII GATC 7 cut(s) 69, 255, 274, 423, 432, 524, 535
EaeI YGGCCR 1 cut(s) 655
EagI CGGCCG 1 cut(s) 655
Eam1104I CTCTTC 3 cut(s) 53, 657, 686
EarI CTCTTC 3 cut(s) 53, 657, 686
Ecl136II GAGCTC 2 cut(s) 385, 473
EclXI CGGCCG 1 cut(s) 655
Eco24I GRGCYC 2 cut(s) 387, 475
Eco52I CGGCCG 1 cut(s) 655
Eco53kI GAGCTC 2 cut(s) 385, 473
Eco57I CTGAAG 1 cut(s) 381
EcoICRI GAGCTC 2 cut(s) 385, 473
EcoT38I GRGCYC 2 cut(s) 387, 475
Esp3I CGTCTC 2 cut(s) 698, 732
FaeI CATG 3 cut(s) 158, 331, 391
FaiI YATR 7 cut(s) 156, 197, 329, 389, 503, 520, 561
FatI CATG 3 cut(s) 154, 327, 387
FauI CCCGC 1 cut(s) 483
FblI GTMKAC 2 cut(s) 417, 759
Fnu4HI GCNGC 2 cut(s) 375, 488
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 2 cut(s) 387, 475
Fsp4HI GCNGC 2 cut(s) 375, 488
FspBI CTAG 3 cut(s) 462, 639, 818
GluI GCNGC 2 cut(s) 375, 488
HaeIII GGCC 3 cut(s) 657, 683, 700
HapII CCGG 7 cut(s) 94, 267, 412, 437, 590, 658, 701
Hin1I GRCGYC 2 cut(s) 447, 728
Hin1II CATG 3 cut(s) 158, 331, 391
HincII GTYRAC 3 cut(s) 33, 418, 760
HindII GTYRAC 3 cut(s) 33, 418, 760
HindIII AAGCTT 3 cut(s) 16, 506, 768
HinfI GANTC 5 cut(s) 43, 248, 465, 578, 821
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 7 cut(s) 94, 267, 412, 437, 590, 658, 701
HphI GGTGA 3 cut(s) 79, 234, 505
Hpy166II GTNNAC 4 cut(s) 33, 418, 587, 760
Hpy188I TCNGA 7 cut(s) 39, 253, 274, 361, 470, 529, 577
Hpy188III TCNNGA 7 cut(s) 67, 111, 131, 155, 388, 451, 850
Hpy8I GTNNAC 4 cut(s) 33, 418, 587, 760
Hpy99I CGWCG 7 cut(s) 43, 151, 404, 598, 730, 733, 764
HpyAV CCTTC 7 cut(s) 198, 249, 306, 356, 522, 690, 746
HpyCH4III ACNGT 2 cut(s) 174, 676
HpyCH4IV ACGT 2 cut(s) 447, 728
HpyCH4V TGCA 3 cut(s) 307, 487, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 814
HpyF3I CTNAG 1 cut(s) 830
HpySE526I ACGT 2 cut(s) 447, 728
Hsp92I GRCGYC 2 cut(s) 447, 728
Hsp92II CATG 3 cut(s) 158, 331, 391
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 7 cut(s) 69, 255, 274, 423, 432, 524, 535
LmnI GCTCC 3 cut(s) 4, 470, 478
Lsp1109I GCAGC 2 cut(s) 361, 499
LweI GCATC 1 cut(s) 834
MaeI CTAG 3 cut(s) 462, 639, 818
MaeII ACGT 2 cut(s) 447, 728
MaeIII GTNAC 2 cut(s) 137, 448
MalI GATC 7 cut(s) 71, 257, 276, 425, 434, 526, 537
MboI GATC 7 cut(s) 69, 255, 274, 423, 432, 524, 535
MboII GAAGA 9 cut(s) 40, 610, 613, 616, 619, 634, 674, 703, 761
MflI RGATCY 5 cut(s) 255, 274, 432, 524, 535
MhlI GDGCHC 2 cut(s) 387, 475
MluCI AATT 4 cut(s) 61, 232, 355, 775
MlyI GAGTC 2 cut(s) 37, 587
MmeI TCCRAC 5 cut(s) 62, 252, 552, 555, 563
MseI TTAA 4 cut(s) 32, 792, 804, 859
MslI CAYNNNNRTG 2 cut(s) 132, 326
MspA1I CMGCKG 1 cut(s) 490
MspCI CTTAAG 1 cut(s) 803
MspI CCGG 7 cut(s) 94, 267, 412, 437, 590, 658, 701
MspR9I CCNGG 4 cut(s) 268, 413, 437, 659
MwoI GCNNNNNNNGC 1 cut(s) 814
NciI CCSGG 4 cut(s) 268, 413, 437, 659
NdeII GATC 7 cut(s) 69, 255, 274, 423, 432, 524, 535
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 3 cut(s) 158, 331, 391
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 448
NspI RCATGY 1 cut(s) 331
PagI TCATGA 2 cut(s) 154, 387
PcsI WCGNNNNNNNCGW 3 cut(s) 378, 423, 453
PfeI GAWTC 3 cut(s) 248, 465, 821
PflFI GACNNNGTC 1 cut(s) 571
PfoI TCCNGGA 1 cut(s) 435
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 2 cut(s) 376, 489
Ple19I CGATCG 2 cut(s) 72, 426
PleI GAGTC 2 cut(s) 37, 586
PpsI GAGTC 2 cut(s) 37, 586
Psp124BI GAGCTC 2 cut(s) 387, 475
PspN4I GGNNCC 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 105
PsuI RGATCY 5 cut(s) 255, 274, 432, 524, 535
PsyI GACNNNGTC 1 cut(s) 571
PvuI CGATCG 2 cut(s) 72, 426
RsaI GTAC 2 cut(s) 230, 836
RsaNI GTAC 2 cut(s) 229, 835
RseI CAYNNNNRTG 2 cut(s) 132, 326
SacI GAGCTC 2 cut(s) 387, 475
SalI GTCGAC 2 cut(s) 416, 758
SaqAI TTAA 4 cut(s) 32, 792, 804, 859
SatI GCNGC 2 cut(s) 375, 488
Sau3AI GATC 7 cut(s) 69, 255, 274, 423, 432, 524, 535
SchI GAGTC 2 cut(s) 37, 587
ScrFI CCNGG 4 cut(s) 268, 413, 437, 659
SduI GDGCHC 2 cut(s) 387, 475
SfaNI GCATC 1 cut(s) 834
SfcI CTRYAG 1 cut(s) 809
SmiMI CAYNNNNRTG 2 cut(s) 132, 326
SmlI CTYRAG 2 cut(s) 803, 848
SmoI CTYRAG 2 cut(s) 803, 848
Sse9I AATT 4 cut(s) 61, 232, 355, 775
SsiI CCGC 1 cut(s) 490
SspMI CTAG 3 cut(s) 462, 639, 818
SstI GAGCTC 2 cut(s) 387, 475
StyD4I CCNGG 4 cut(s) 266, 411, 435, 657
TaaI ACNGT 2 cut(s) 174, 676
TaiI ACGT 2 cut(s) 450, 731
TaqI TCGA 5 cut(s) 417, 426, 581, 731, 759
TaqII GACCGA 1 cut(s) 470
TasI AATT 4 cut(s) 61, 232, 355, 775
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 3 cut(s) 248, 465, 821
Tru1I TTAA 4 cut(s) 32, 792, 804, 859
Tru9I TTAA 4 cut(s) 32, 792, 804, 859
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 374, 487
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 73, 644, 769
TspGWI ACGGA 1 cut(s) 756
Tth111I GACNNNGTC 1 cut(s) 571
Vha464I CTTAAG 1 cut(s) 803
XapI RAATTY 1 cut(s) 775
XceI RCATGY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmiI GTMKAC 2 cut(s) 417, 759
XspI CTAG 3 cut(s) 462, 639, 818
ZraI GACGTC 2 cut(s) 448, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.