Rorug02G0036300

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011769
Physical Location & Seq
Reverse (-)
2871020 .. 2874245
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0036300.1

Sequence Viewer

Length: 1584 bp
ATGGAGGAACAAGATTTGCTGAATCGAAACACCGACTGCGTCCATTTCATGGCTTCTCCTCCCGCCTGCGACAAGGGACTTGAATGTGAGTTTCGACACAGCAAGATGGCGAGGCTCAACCCAAAAGTATGCTGGTATTGGTTGGCTGGGGACTGTTTTAATCCAACTTGTGCTTTTAGGCATCCTCCATTGGAGGGGCATGAAGCAGCACCATCAGAGACCACCCCATCTTCTATTTCTGCAAACAAGAGCAACATTCCTTGTTACTTTTACTTGAATGGGATGTGCAATAAAGGTGATAGGTGCTCTTTCTTGCATGACGCTGATGGTAGTGCATCAACTGGGAAATGTTCAAACACAGCTTCTGCATGTACTGAAGCACTTCCTTCAGAAAACAAGGCATCCACAGTAAATGAAACAGTATCAGCACCAACAGTTGCACACCACAACCCTTTGGAAACTGCGGCAAAGGCAACAGTTGGTACAAGATTCCAGCCTAAGCAGGATCTTGATTATCAGGAACAACTACGGAAAAGTGCTTCTCCTCATGTTTCTGAATATGGGGATGAAGAGGCTGATGAAATTAGATCAAACTCCTTGCTCCTTCCAGCAGAAGGCTCTATTCATAGCAAATCTCCCTTATTCACTGATCAGAGTTCAGAGGAGGGATCAGATGACCTTATTGTGCAAGAGGAATGGTGGGAATCCTCTCCAGGCTTTGATGTTCTTGTTGATGGTAAATCAGAGGAGGATAGCCCCGAGTACTTTCCCACACTTGACGGAGAGCACTGGGAACTAAATAAGGAGTGGCATGATTATGACAATCCAGATGAGTATGATCCCCAGCATCCTGGTGCTGAACTTTTGCATGAAAACCAAATTTATGACTCCTATGATTGTCTAGATACCAGGTACCTTTTTGGTAATGAGAGAAGTATTCATGGCTATGCAGAGGATAGAATGTTGGATTCCATATTGTCCCGCAAGAGGAAGCTTATGCCACTGGAAGTGGCAGTCGATGACCAGGATGGTTTGGATCTCCGAAACCACCTGAGAAGACGCAGAGTGATTGATGATTATTCAAGTTCTGGATTATCGAGAATGCATGAATCACTTCAGTTGATCGGTAGAAGCCAAGAATGGCCTCAAAGGCACGATACAGGTTGGCAGAGAAGATTGGCATCAGAAGTGGAAAACAGAACTTTCGAATCACGCAGGGAGAATGAATCATTTAACAATGCTGGAATTGAACGTCGTCCACATAGGCATACACAGCATTACATATCTCGGAAACATCAGGAAAGAAGGCTGGCTAAGCCAGAGGTTCCTTCATCTGGGTTCTCAAGGAGACCTATACCAAGGGACAAGAGATCATCTATAGAGGACTCAACTGTCTTTACAGGACCCAAGTCACTTGCTCAGATCAAAGAAGAGAAGATGAAAGCAGACGAAAATGGACGTGGTATTAGGAAATCAAGATGTGTGCAGAGAACTCGAGATGACTTCCAGGGCCCTAAACCTTTCACTGAAATTCTAAAAGAGAAAAGGAAGCTAGCTGACAGGAGCGGTTCTGGCAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

527

Amino Acids

60.08

Weight (kDa)

5.56

Isoelectric Point (pI)

69.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_3 PF15663 8 - 64 1.9e-10 Zinc-finger containing family
zf_CCCH_4 PF18345 88 - 106 5.9e-06 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26130 AT5G56980
fragaria_vesca FvH4_1g07560
malus_domestica MD02G1080400.v1.1 MD15G1207800.v1.1
prunus_persica Prupe.7G209100_v2.0.a1
pyrus_communis pycom15g18410
rosa_laevigata RLG00000016403
rosa_multiflora Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006
rosa_roxburghii Rroxscaffold_2G00148090
rosa_rugosa Rorug02G0036200 Rorug02G0036300
rosa_samantha Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400
rosa_wichuraiana Rw2G006470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1391
Acc65I GGTACC 1 cut(s) 912
AccB1I GGYRCC 1 cut(s) 912
AccB7I CCANNNNNTGG 1 cut(s) 49
AccBSI CCGCTC 1 cut(s) 1566
AciI CCGC 4 cut(s) 63, 464, 982, 1566
AclWI GGATC 4 cut(s) 513, 676, 833, 1044
AcsI RAATTY 2 cut(s) 879, 1530
AcuI CTGAAG 3 cut(s) 372, 396, 1100
AfaI GTAC 4 cut(s) 373, 484, 764, 914
AfiI CCNNNNNNNGG 5 cut(s) 49, 194, 614, 987, 1334
AgsI TTSAA 5 cut(s) 83, 277, 354, 1083, 1250
AjiI CACGTC 1 cut(s) 1460
AjnI CCWGG 5 cut(s) 712, 850, 908, 1023, 1506
AluBI AGCT 4 cut(s) 362, 994, 1552, 1556
AluI AGCT 4 cut(s) 362, 994, 1552, 1556
Alw21I GWGCWC 2 cut(s) 308, 789
Alw26I GTCTC 2 cut(s) 212, 1342
AlwI GGATC 4 cut(s) 513, 676, 833, 1044
AlwNI CAGNNNCTG 2 cut(s) 365, 1581
Ama87I CYCGRG 2 cut(s) 758, 1494
AoxI GGCC 2 cut(s) 1142, 1510
ApaI GGGCCC 1 cut(s) 1514
ApeKI GCWGC 2 cut(s) 206, 1575
ApoI RAATTY 2 cut(s) 879, 1530
Asp700I GAANNNNTTC 2 cut(s) 381, 1113
Asp718I GGTACC 1 cut(s) 912
AspS9I GGNCC 3 cut(s) 1403, 1510, 1511
AsuHPI GGTGA 1 cut(s) 308
AsuII TTCGAA 1 cut(s) 1206
AsuNHI GCTAGC 1 cut(s) 1552
AvaI CYCGRG 2 cut(s) 758, 1494
AvaII GGWCC 1 cut(s) 1403
BaeGI GKGCMC 1 cut(s) 1514
BanI GGYRCC 1 cut(s) 912
BanII GRGCYC 1 cut(s) 1514
BbsI GAAGAC 1 cut(s) 1063
Bbv12I GWGCWC 2 cut(s) 308, 789
BbvI GCAGC 1 cut(s) 218
BccI CCATC 6 cut(s) 100, 220, 235, 320, 728, 1022
BcgI CGANNNNNNTGC 2 cut(s) 1475, 1509
BciT130I CCWGG 5 cut(s) 714, 852, 910, 1025, 1508
BclI TGATCA 1 cut(s) 649
BcoDI GTCTC 2 cut(s) 212, 1342
BfaI CTAG 2 cut(s) 902, 1553
BfmI CTRYAG 1 cut(s) 1377
BglI GCCNNNNNGGC 1 cut(s) 1150
BisI GCNGC 3 cut(s) 207, 465, 1576
BlpI GCTNAGC 1 cut(s) 1314
BlsI GCNGC 3 cut(s) 208, 466, 1577
BmcAI AGTACT 1 cut(s) 764
Bme1390I CCNGG 5 cut(s) 714, 852, 910, 1025, 1508
Bme18I GGWCC 1 cut(s) 1403
BmeT110I CYCGRG 2 cut(s) 758, 1494
BmgBI CACGTC 1 cut(s) 1460
BmgT120I GGNCC 3 cut(s) 1403, 1510, 1511
BmiI GGNNCC 4 cut(s) 914, 1326, 1405, 1512
BmrFI CCNGG 5 cut(s) 714, 852, 910, 1025, 1508
BmrI ACTGGG 2 cut(s) 351, 799
BmsI GCATC 5 cut(s) 190, 344, 410, 856, 1190
BmtI GCTAGC 1 cut(s) 1556
BmuI ACTGGG 2 cut(s) 351, 799
BoxI GACNNNNGTC 1 cut(s) 1408
BpiI GAAGAC 1 cut(s) 1063
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 1314
Bpu14I TTCGAA 1 cut(s) 1206
BpuEI CTTGAG 1 cut(s) 1327
BsaBI GATNNNNATC 1 cut(s) 1180
BsaI GGTCTC 2 cut(s) 212, 1342
BsaJI CCNNGG 2 cut(s) 1358, 1507
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 194, 614, 987, 1334
Bse1I ACTGG 3 cut(s) 346, 794, 1008
Bse8I GATNNNNATC 1 cut(s) 1180
BseBI CCWGG 5 cut(s) 714, 852, 910, 1025, 1508
BseDI CCNNGG 2 cut(s) 1358, 1507
BseGI GGATG 6 cut(s) 181, 288, 401, 571, 847, 1033
BseJI GATNNNNATC 1 cut(s) 1180
BseLI CCNNNNNNNGG 5 cut(s) 49, 194, 614, 987, 1334
BseMII CTCAG 2 cut(s) 1043, 1433
BseNI ACTGG 3 cut(s) 346, 794, 1008
BseRI GAGGAG 4 cut(s) 48, 534, 677, 761
BseSI GKGCMC 1 cut(s) 1514
BseXI GCAGC 1 cut(s) 218
BseYI CCCAGC 2 cut(s) 146, 843
BsgI GTGCAG 1 cut(s) 1505
BshFI GGCC 2 cut(s) 1144, 1512
BshNI GGYRCC 1 cut(s) 912
BsiHKAI GWGCWC 2 cut(s) 308, 789
BsiHKCI CYCGRG 2 cut(s) 758, 1494
BslFI GGGAC 4 cut(s) 90, 164, 964, 1376
BslI CCNNNNNNNGG 5 cut(s) 49, 194, 614, 987, 1334
BsmAI GTCTC 2 cut(s) 212, 1342
BsmFI GGGAC 4 cut(s) 90, 164, 964, 1376
BsmI GAATGC 1 cut(s) 1107
BsnI GGCC 2 cut(s) 1144, 1512
Bso31I GGTCTC 2 cut(s) 212, 1342
BsoBI CYCGRG 2 cut(s) 758, 1494
Bsp119I TTCGAA 1 cut(s) 1206
Bsp120I GGGCCC 1 cut(s) 1510
Bsp1286I GDGCHC 3 cut(s) 308, 789, 1514
Bsp143I GATC 9 cut(s) 505, 587, 649, 668, 838, 1036, 1122, 1370, 1422
Bsp1720I GCTNAGC 1 cut(s) 1314
BspACI CCGC 4 cut(s) 63, 464, 982, 1566
BspANI GGCC 2 cut(s) 1144, 1512
BspCNI CTCAG 2 cut(s) 1044, 1432
BspLI GGNNCC 4 cut(s) 914, 1326, 1405, 1512
BspOI GCTAGC 1 cut(s) 1556
BspPI GGATC 4 cut(s) 513, 676, 833, 1044
BspT104I TTCGAA 1 cut(s) 1206
BspT107I GGYRCC 1 cut(s) 912
BspTNI GGTCTC 2 cut(s) 212, 1342
BsrBI CCGCTC 1 cut(s) 1566
BsrI ACTGG 3 cut(s) 346, 794, 1008
BssECI CCNNGG 2 cut(s) 1358, 1507
BssMI GATC 9 cut(s) 505, 587, 649, 668, 838, 1036, 1122, 1370, 1422
BssT1I CCWWGG 1 cut(s) 1358
Bst2UI CCWGG 5 cut(s) 714, 852, 910, 1025, 1508
Bst4CI ACNGT 6 cut(s) 155, 409, 421, 436, 478, 1393
Bst6I CTCTTC 2 cut(s) 564, 1425
BstBI TTCGAA 1 cut(s) 1206
BstC8I GCNNGC 3 cut(s) 67, 1311, 1554
BstDEI CTNAG 4 cut(s) 498, 1052, 1314, 1419
BstF5I GGATG 6 cut(s) 181, 288, 401, 571, 847, 1033
BstKTI GATC 9 cut(s) 508, 590, 652, 671, 841, 1039, 1125, 1373, 1425
BstMAI GTCTC 2 cut(s) 212, 1342
BstMBI GATC 9 cut(s) 505, 587, 649, 668, 838, 1036, 1122, 1370, 1422
BstMWI GCNNNNNNNGC 5 cut(s) 470, 1150, 1273, 1315, 1572
BstNI CCWGG 5 cut(s) 714, 852, 910, 1025, 1508
BstNSI RCATGY 1 cut(s) 372
BstPAI GACNNNNGTC 1 cut(s) 1408
BstSCI CCNGG 5 cut(s) 712, 850, 908, 1023, 1506
BstSFI CTRYAG 1 cut(s) 1377
BstSLI GKGCMC 1 cut(s) 1514
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 1063
BstX2I RGATCY 2 cut(s) 505, 1036
BstXI CCANNNNNNTGG 1 cut(s) 851
BstYI RGATCY 2 cut(s) 505, 1036
BsuRI GGCC 2 cut(s) 1144, 1512
BtrI CACGTC 1 cut(s) 1460
BtsCI GGATG 6 cut(s) 181, 288, 401, 571, 847, 1033
BtsIMutI CAGTG 4 cut(s) 645, 787, 1001, 1524
Cac8I GCNNGC 3 cut(s) 67, 1311, 1554
CaiI CAGNNNCTG 2 cut(s) 365, 1581
Cfr13I GGNCC 3 cut(s) 1403, 1510, 1511
CseI GACGC 3 cut(s) 28, 329, 1068
CsiI ACCWGGT 1 cut(s) 908
Csp6I GTAC 4 cut(s) 372, 483, 763, 913
CviAII CATG 9 cut(s) 49, 200, 317, 369, 548, 812, 869, 941, 1106
CviQI GTAC 4 cut(s) 372, 483, 763, 913
DdeI CTNAG 4 cut(s) 498, 1052, 1314, 1419
DpnI GATC 9 cut(s) 507, 589, 651, 670, 840, 1038, 1124, 1372, 1424
DpnII GATC 9 cut(s) 505, 587, 649, 668, 838, 1036, 1122, 1370, 1422
DrdI GACNNNNNNGTC 1 cut(s) 1391
DseDI GACNNNNNNGTC 1 cut(s) 1391
Eam1104I CTCTTC 2 cut(s) 564, 1425
EarI CTCTTC 2 cut(s) 564, 1425
Eco130I CCWWGG 1 cut(s) 1358
Eco24I GRGCYC 1 cut(s) 1514
Eco31I GGTCTC 2 cut(s) 212, 1342
Eco47I GGWCC 1 cut(s) 1403
Eco57I CTGAAG 3 cut(s) 372, 396, 1100
Eco88I CYCGRG 2 cut(s) 758, 1494
EcoO109I RGGNCCY 3 cut(s) 1403, 1510, 1511
EcoRII CCWGG 5 cut(s) 712, 850, 908, 1023, 1506
EcoT14I CCWWGG 1 cut(s) 1358
EcoT22I ATGCAT 1 cut(s) 1107
EcoT38I GRGCYC 1 cut(s) 1514
ErhI CCWWGG 1 cut(s) 1358
FaeI CATG 9 cut(s) 52, 203, 320, 372, 551, 815, 872, 944, 1109
FaqI GGGAC 4 cut(s) 90, 164, 964, 1376
FatI CATG 9 cut(s) 48, 199, 316, 368, 547, 811, 868, 940, 1105
FauI CCCGC 2 cut(s) 70, 989
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 3 cut(s) 207, 465, 1576
FokI GGATG 6 cut(s) 168, 295, 388, 578, 834, 1040
FriOI GRGCYC 1 cut(s) 1514
Fsp4HI GCNGC 3 cut(s) 207, 465, 1576
FspBI CTAG 2 cut(s) 902, 1553
GluI GCNGC 3 cut(s) 207, 465, 1576
GsaI CCCAGC 2 cut(s) 150, 847
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 2 cut(s) 1144, 1512
HgaI GACGC 3 cut(s) 28, 329, 1068
Hin1II CATG 9 cut(s) 52, 203, 320, 372, 551, 815, 872, 944, 1109
HindIII AAGCTT 1 cut(s) 992
HinfI GANTC 9 cut(s) 22, 489, 704, 887, 968, 1109, 1208, 1226, 1385
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 1259
Hpy188III TCNNGA 9 cut(s) 509, 518, 827, 902, 1089, 1098, 1298, 1476, 1496
Hpy8I GTNNAC 1 cut(s) 1259
Hpy99I CGWCG 1 cut(s) 1257
HpyAV CCTTC 5 cut(s) 396, 608, 614, 1299, 1338
HpyCH4III ACNGT 6 cut(s) 155, 409, 421, 436, 478, 1393
HpyCH4IV ACGT 2 cut(s) 1252, 1459
HpyF10VI GCNNNNNNNGC 5 cut(s) 470, 1150, 1273, 1315, 1572
HpyF3I CTNAG 4 cut(s) 498, 1052, 1314, 1419
HpySE526I ACGT 2 cut(s) 1252, 1459
Hsp92II CATG 9 cut(s) 52, 203, 320, 372, 551, 815, 872, 944, 1109
KpnI GGTACC 1 cut(s) 916
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 9 cut(s) 505, 587, 649, 668, 838, 1036, 1122, 1370, 1422
LmnI GCTCC 2 cut(s) 606, 1563
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 5 cut(s) 190, 344, 410, 856, 1190
MabI ACCWGGT 1 cut(s) 908
MaeI CTAG 2 cut(s) 902, 1553
MaeII ACGT 2 cut(s) 1252, 1459
MaeIII GTNAC 2 cut(s) 263, 1410
MalI GATC 9 cut(s) 507, 589, 651, 670, 840, 1038, 1124, 1372, 1424
MbiI CCGCTC 1 cut(s) 1566
MboI GATC 9 cut(s) 505, 587, 649, 668, 838, 1036, 1122, 1370, 1422
MboII GAAGA 6 cut(s) 222, 581, 1068, 1185, 1442, 1447
MflI RGATCY 2 cut(s) 505, 1036
MhlI GDGCHC 3 cut(s) 308, 789, 1514
MluCI AATT 4 cut(s) 582, 879, 1245, 1530
MlyI GAGTC 2 cut(s) 881, 1379
MmeI TCCRAC 2 cut(s) 188, 945
Mph1103I ATGCAT 1 cut(s) 1107
MroXI GAANNNNTTC 2 cut(s) 381, 1113
MseI TTAA 2 cut(s) 159, 1233
MslI CAYNNNNRTG 3 cut(s) 816, 852, 945
MspR9I CCNGG 5 cut(s) 714, 852, 910, 1025, 1508
Mva1269I GAATGC 1 cut(s) 1107
MvaI CCWGG 5 cut(s) 714, 852, 910, 1025, 1508
MwoI GCNNNNNNNGC 5 cut(s) 470, 1150, 1273, 1315, 1572
NdeII GATC 9 cut(s) 505, 587, 649, 668, 838, 1036, 1122, 1370, 1422
NheI GCTAGC 1 cut(s) 1552
NlaIII CATG 9 cut(s) 52, 203, 320, 372, 551, 815, 872, 944, 1109
NlaIV GGNNCC 4 cut(s) 914, 1326, 1405, 1512
NmuCI GTSAC 1 cut(s) 1410
NsiI ATGCAT 1 cut(s) 1107
NspI RCATGY 1 cut(s) 372
NspV TTCGAA 1 cut(s) 1206
PaeR7I CTCGAG 1 cut(s) 1494
PctI GAATGC 1 cut(s) 1107
PdmI GAANNNNTTC 2 cut(s) 381, 1113
PfeI GAWTC 7 cut(s) 22, 489, 704, 968, 1109, 1208, 1226
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 3 cut(s) 208, 466, 1577
PleI GAGTC 2 cut(s) 881, 1379
PpsI GAGTC 2 cut(s) 881, 1379
PpuMI RGGWCCY 1 cut(s) 1403
PshAI GACNNNNGTC 1 cut(s) 1408
Psp5II RGGWCCY 1 cut(s) 1403
Psp6I CCWGG 5 cut(s) 712, 850, 908, 1023, 1506
PspFI CCCAGC 2 cut(s) 146, 843
PspGI CCWGG 5 cut(s) 712, 850, 908, 1023, 1506
PspN4I GGNNCC 4 cut(s) 914, 1326, 1405, 1512
PspOMI GGGCCC 1 cut(s) 1510
PspPI GGNCC 3 cut(s) 1403, 1510, 1511
PspPPI RGGWCCY 1 cut(s) 1403
PstNI CAGNNNCTG 2 cut(s) 365, 1581
PsuI RGATCY 2 cut(s) 505, 1036
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 4 cut(s) 373, 484, 764, 914
RsaNI GTAC 4 cut(s) 372, 483, 763, 913
RseI CAYNNNNRTG 3 cut(s) 816, 852, 945
SaqAI TTAA 2 cut(s) 159, 1233
SatI GCNGC 3 cut(s) 207, 465, 1576
Sau3AI GATC 9 cut(s) 505, 587, 649, 668, 838, 1036, 1122, 1370, 1422
Sau96I GGNCC 3 cut(s) 1403, 1510, 1511
ScaI AGTACT 1 cut(s) 764
SchI GAGTC 2 cut(s) 881, 1379
ScrFI CCNGG 5 cut(s) 714, 852, 910, 1025, 1508
SduI GDGCHC 3 cut(s) 308, 789, 1514
SexAI ACCWGGT 1 cut(s) 908
SfaNI GCATC 5 cut(s) 190, 344, 410, 856, 1190
SfcI CTRYAG 1 cut(s) 1377
Sfr274I CTCGAG 1 cut(s) 1494
SfuI TTCGAA 1 cut(s) 1206
SinI GGWCC 1 cut(s) 1403
SlaI CTCGAG 1 cut(s) 1494
SmiMI CAYNNNNRTG 3 cut(s) 816, 852, 945
SmlI CTYRAG 2 cut(s) 1342, 1494
SmoI CTYRAG 2 cut(s) 1342, 1494
Sse9I AATT 4 cut(s) 582, 879, 1245, 1530
SsiI CCGC 4 cut(s) 63, 464, 982, 1566
SspMI CTAG 2 cut(s) 902, 1553
StyD4I CCNGG 5 cut(s) 712, 850, 908, 1023, 1506
StyI CCWWGG 1 cut(s) 1358
TaaI ACNGT 6 cut(s) 155, 409, 421, 436, 478, 1393
TaiI ACGT 2 cut(s) 1255, 1462
TaqI TCGA 6 cut(s) 25, 94, 1017, 1097, 1206, 1495
TasI AATT 4 cut(s) 582, 879, 1245, 1530
TatI WGTACW 2 cut(s) 371, 762
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 7 cut(s) 22, 489, 704, 968, 1109, 1208, 1226
Tru1I TTAA 2 cut(s) 159, 1233
Tru9I TTAA 2 cut(s) 159, 1233
TscAI CASTG 4 cut(s) 652, 794, 1008, 1531
TseFI GTSAC 1 cut(s) 1410
TseI GCWGC 2 cut(s) 206, 1575
Tsp45I GTSAC 1 cut(s) 1410
TspGWI ACGGA 2 cut(s) 544, 795
TspRI CASTG 4 cut(s) 652, 794, 1008, 1531
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 1403
XapI RAATTY 2 cut(s) 879, 1530
XbaI TCTAGA 1 cut(s) 901
XceI RCATGY 1 cut(s) 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 1494
XmnI GAANNNNTTC 2 cut(s) 381, 1113
XspI CTAG 2 cut(s) 902, 1553
ZrmI AGTACT 1 cut(s) 764
Zsp2I ATGCAT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.