Rmu_sc0004086.1_g000010

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004086.1
OG0011769
Physical Location & Seq
Reverse (-)
37464 .. 38267
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004086.1_g000010.1.cds

Sequence Viewer

Length: 804 bp
atggcagctatgttcgctttcatgctcagctggctcacacccacctccctcttcatcttcctcaacctcgccatcggcaccctcgtcatctcccaccgcttctgcaaaacacctcagcaacaaccccaacacgaccagttcggtagaccgccctcgctcctggaacgtgtcaggtcgttcgacttctcccactacaacttccaacccgatcacccggaaccccatcacgtaacggaaaacccgaccggattagtccggactccgtcactcatggagcggctcaggtccatcaacttttcccagtacgacttccaacaacccgacccggaacccgaacacgtaacagaacacccaacaccggaaaacccgaccggaatagtccggacgccctcgctcctggcccgtctcaagtcaatggatttctcctctctctacagatccgacccggaagctgaagatcttcatccgacagaggccgataaccggaacccgaaaccgaaaccgaagccgacgcgagaccatatggttcatcggagcaagtcggacaggggtcatgaagatgaaggttcagaaatccgacccgaaaaggtgataaagaagtccgccagcgagagaggattcgaagaaaacgagggaggtgtccggcagcgaaggggggtggagaaaacgatgtcgtttggagatgatgaagaagttgacgcgaaagctgacgactttattaaccggttcaagcagcagctcaagttacagaggctcgactcgcttttgcgttacagcagaaatgctccacagaaactaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

267

Amino Acids

30.88

Weight (kDa)

6.47

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26130 AT5G56980
fragaria_vesca FvH4_1g07560
malus_domestica MD02G1080400.v1.1 MD15G1207800.v1.1
prunus_persica Prupe.7G209100_v2.0.a1
pyrus_communis pycom15g18410
rosa_laevigata RLG00000016403
rosa_multiflora Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006
rosa_roxburghii Rroxscaffold_2G00148090
rosa_rugosa Rorug02G0036200 Rorug02G0036300
rosa_samantha Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400
rosa_wichuraiana Rw2G006470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 145
AccII CGCG 2 cut(s) 514, 701
AccIII TCCGGA 2 cut(s) 255, 381
AciI CCGC 4 cut(s) 97, 149, 277, 603
AclWI GGATC 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 474
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 358, 483
AflIII ACRYGT 2 cut(s) 166, 337
AgeI ACCGGT 1 cut(s) 723
AgsI TTSAA 1 cut(s) 730
AjnI CCWGG 2 cut(s) 159, 396
AluBI AGCT 5 cut(s) 8, 30, 452, 707, 739
AluI AGCT 5 cut(s) 8, 30, 452, 707, 739
Alw26I GTCTC 2 cut(s) 410, 510
AlwI GGATC 1 cut(s) 432
Aor13HI TCCGGA 2 cut(s) 255, 381
AoxI GGCC 2 cut(s) 399, 474
ApeKI GCWGC 4 cut(s) 5, 646, 733, 736
AsiGI ACCGGT 1 cut(s) 723
Asp700I GAANNNNTTC 1 cut(s) 459
AspS9I GGNCC 2 cut(s) 285, 400
AsuC2I CCSGG 3 cut(s) 215, 326, 446
AsuHPI GGTGA 2 cut(s) 203, 601
AsuII TTCGAA 1 cut(s) 621
AvaII GGWCC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 4 cut(s) 17, 658, 745, 748
BccI CCATC 3 cut(s) 80, 231, 296
BciT130I CCWGG 2 cut(s) 161, 398
BcnI CCSGG 3 cut(s) 215, 326, 446
BcoDI GTCTC 2 cut(s) 410, 510
BfmI CTRYAG 1 cut(s) 433
BglII AGATCT 1 cut(s) 457
BisI GCNGC 5 cut(s) 6, 278, 647, 734, 737
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 5 cut(s) 7, 279, 648, 735, 738
Bme1390I CCNGG 5 cut(s) 161, 215, 326, 398, 446
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 285, 400
BmiI GGNNCC 4 cut(s) 79, 219, 330, 488
BmrFI CCNGG 5 cut(s) 161, 215, 326, 398, 446
BmrI ACTGGG 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 549
Bpu10I CCTNAGC 2 cut(s) 114, 281
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 621
BpuEI CTTGAG 2 cut(s) 392, 725
BpuMI CCSGG 3 cut(s) 215, 326, 446
BsaAI YACGTR 2 cut(s) 229, 340
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 510
BsaWI WCCGGW 7 cut(s) 245, 255, 358, 371, 381, 483, 723
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 483
Bse118I RCCGGY 1 cut(s) 723
Bse1I ACTGG 2 cut(s) 136, 301
Bse8I GATNNNNATC 1 cut(s) 462
BseAI TCCGGA 2 cut(s) 255, 381
BseBI CCWGG 2 cut(s) 161, 398
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 358, 483
BseMII CTCAG 3 cut(s) 40, 128, 295
BseNI ACTGG 2 cut(s) 136, 301
BseRI GAGGAG 1 cut(s) 415
BseXI GCAGC 4 cut(s) 17, 658, 745, 748
Bsh1236I CGCG 2 cut(s) 514, 701
Bsh1285I CGRYCG 2 cut(s) 246, 372
BshFI GGCC 2 cut(s) 401, 476
BshNI GGYRCC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 723
BsiEI CGRYCG 2 cut(s) 246, 372
BslI CCNNNNNNNGG 2 cut(s) 358, 483
BsmAI GTCTC 2 cut(s) 410, 510
BsmBI CGTCTC 1 cut(s) 410
BsnI GGCC 2 cut(s) 401, 476
Bso31I GGTCTC 1 cut(s) 510
Bsp119I TTCGAA 1 cut(s) 621
Bsp13I TCCGGA 2 cut(s) 255, 381
Bsp143I GATC 3 cut(s) 208, 437, 457
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 4 cut(s) 97, 149, 277, 603
BspANI GGCC 2 cut(s) 401, 476
BspCNI CTCAG 3 cut(s) 39, 127, 294
BspEI TCCGGA 2 cut(s) 255, 381
BspFNI CGCG 2 cut(s) 514, 701
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 4 cut(s) 79, 219, 330, 488
BspPI GGATC 1 cut(s) 432
BspT104I TTCGAA 1 cut(s) 621
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 510
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 723
BsrI ACTGG 2 cut(s) 136, 301
BssAI RCCGGY 1 cut(s) 723
BssMI GATC 3 cut(s) 208, 437, 457
BssNI GRCGYC 1 cut(s) 386
Bst2UI CCWGG 2 cut(s) 161, 398
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 386
BstBAI YACGTR 2 cut(s) 229, 340
BstBI TTCGAA 1 cut(s) 621
BstC8I GCNNGC 2 cut(s) 32, 607
BstDEI CTNAG 3 cut(s) 26, 114, 281
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 2 cut(s) 514, 701
BstKTI GATC 3 cut(s) 211, 440, 460
BstMAI GTCTC 2 cut(s) 410, 510
BstMBI GATC 3 cut(s) 208, 437, 457
BstMCI CGRYCG 2 cut(s) 246, 372
BstMWI GCNNNNNNNGC 3 cut(s) 14, 31, 760
BstNI CCWGG 2 cut(s) 161, 398
BstPAI GACNNNNGTC 1 cut(s) 549
BstSCI CCNGG 5 cut(s) 159, 213, 324, 396, 444
BstSFI CTRYAG 1 cut(s) 433
BstUI CGCG 2 cut(s) 514, 701
BstV1I GCAGC 4 cut(s) 17, 658, 745, 748
BstX2I RGATCY 2 cut(s) 437, 457
BstYI RGATCY 2 cut(s) 437, 457
BsuRI GGCC 2 cut(s) 401, 476
BtsCI GGATG 1 cut(s) 463
Cac8I GCNNGC 2 cut(s) 32, 607
CciI TCATGA 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 723
Cfr13I GGNCC 2 cut(s) 285, 400
CseI GACGC 3 cut(s) 394, 520, 707
Csp6I GTAC 1 cut(s) 304
CspAI ACCGGT 1 cut(s) 723
CviAII CATG 3 cut(s) 22, 271, 554
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 3 cut(s) 26, 114, 281
DpnI GATC 3 cut(s) 210, 439, 459
DpnII GATC 3 cut(s) 208, 437, 457
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 474
EcoRII CCWGG 2 cut(s) 159, 396
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 3 cut(s) 25, 274, 557
FaiI YATR 6 cut(s) 11, 23, 272, 522, 524, 555
FatI CATG 3 cut(s) 21, 270, 553
FauNDI CATATG 1 cut(s) 522
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 5 cut(s) 6, 278, 647, 734, 737
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 5 cut(s) 6, 278, 647, 734, 737
GluI GCNGC 5 cut(s) 6, 278, 647, 734, 737
HaeIII GGCC 2 cut(s) 401, 476
HgaI GACGC 3 cut(s) 394, 520, 707
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 3 cut(s) 25, 274, 557
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 3 cut(s) 259, 618, 758
HphI GGTGA 2 cut(s) 203, 601
Hpy166II GTNNAC 2 cut(s) 146, 697
Hpy188I TCNGA 6 cut(s) 442, 468, 534, 544, 571, 578
Hpy188III TCNNGA 3 cut(s) 256, 382, 554
Hpy8I GTNNAC 2 cut(s) 146, 697
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 2 cut(s) 557, 645
HpyCH4IV ACGT 3 cut(s) 166, 228, 339
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 31, 760
HpyF3I CTNAG 3 cut(s) 26, 114, 281
HpySE526I ACGT 3 cut(s) 166, 228, 339
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 3 cut(s) 25, 274, 557
Kpn2I TCCGGA 2 cut(s) 255, 381
Kzo9I GATC 3 cut(s) 208, 437, 457
LmnI GCTCC 5 cut(s) 162, 274, 399, 534, 790
Lsp1109I GCAGC 4 cut(s) 17, 658, 745, 748
MaeII ACGT 3 cut(s) 166, 228, 339
MaeIII GTNAC 5 cut(s) 229, 264, 340, 744, 770
MalI GATC 3 cut(s) 210, 439, 459
MbiI CCGCTC 1 cut(s) 277
MboI GATC 3 cut(s) 208, 437, 457
MboII GAAGA 7 cut(s) 43, 49, 452, 467, 569, 635, 701
MflI RGATCY 2 cut(s) 437, 457
MluCI AATT 1 cut(s) 799
MlyI GAGTC 2 cut(s) 253, 752
MmeI TCCRAC 6 cut(s) 226, 337, 465, 491, 522, 601
MroI TCCGGA 2 cut(s) 255, 381
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 2 cut(s) 720, 802
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 30
MspR9I CCNGG 5 cut(s) 161, 215, 326, 398, 446
MvaI CCWGG 2 cut(s) 161, 398
MvnI CGCG 2 cut(s) 514, 701
MwoI GCNNNNNNNGC 3 cut(s) 14, 31, 760
NciI CCSGG 3 cut(s) 215, 326, 446
NdeI CATATG 1 cut(s) 522
NdeII GATC 3 cut(s) 208, 437, 457
NlaIII CATG 3 cut(s) 25, 274, 557
NlaIV GGNNCC 4 cut(s) 79, 219, 330, 488
NmuCI GTSAC 1 cut(s) 264
NspV TTCGAA 1 cut(s) 621
PagI TCATGA 1 cut(s) 553
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 239, 627
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 618
PflFI GACNNNGTC 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 159
PinAI ACCGGT 1 cut(s) 723
PkrI GCNGC 5 cut(s) 7, 279, 648, 735, 738
PleI GAGTC 2 cut(s) 253, 752
PpsI GAGTC 2 cut(s) 253, 752
Ppu21I YACGTR 2 cut(s) 229, 340
PshAI GACNNNNGTC 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 159, 396
PspGI CCWGG 2 cut(s) 159, 396
PspN4I GGNNCC 4 cut(s) 79, 219, 330, 488
PspPI GGNCC 2 cut(s) 285, 400
PsuI RGATCY 2 cut(s) 437, 457
PsyI GACNNNGTC 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 558
SaqAI TTAA 2 cut(s) 720, 802
SatI GCNGC 5 cut(s) 6, 278, 647, 734, 737
Sau3AI GATC 3 cut(s) 208, 437, 457
Sau96I GGNCC 2 cut(s) 285, 400
SchI GAGTC 2 cut(s) 253, 752
ScrFI CCNGG 5 cut(s) 161, 215, 326, 398, 446
SfcI CTRYAG 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 621
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 407, 740
SmoI CTYRAG 2 cut(s) 407, 740
Sse9I AATT 1 cut(s) 799
SsiI CCGC 4 cut(s) 97, 149, 277, 603
StyD4I CCNGG 5 cut(s) 159, 213, 324, 396, 444
TaiI ACGT 3 cut(s) 169, 231, 342
TaqI TCGA 3 cut(s) 180, 621, 756
TasI AATT 1 cut(s) 799
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 2 cut(s) 720, 802
Tru9I TTAA 2 cut(s) 720, 802
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 4 cut(s) 5, 646, 733, 736
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 7 cut(s) 10, 43, 452, 518, 570, 576, 702
TspGWI ACGGA 2 cut(s) 248, 252
Tth111I GACNNNGTC 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.