Rmu_sc0021911.1_g000006

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021911.1
OG0011769
Physical Location & Seq
Reverse (-)
17154 .. 18581
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021911.1_g000006.1.cds

Sequence Viewer

Length: 1428 bp
atggcagctatgttggctttcatgctcagctggctcacacccacctccctcttcatcttcctcaacctcgccatcggcaccctcgtcatctcccaccgcttctgcaaaacacctcagcaacaaccccaacacgaccagttcggtagaccgccctcgctcctggaacgtgtcaggtcgttcgacttctcccactacaacttccaacccgatcacccggaaccccatcacgtaacggaaaacccgaccggattagtccggactccgtcactcatggagcggctcaggtccatcaacttttcccactacaacttccaacatcactacccggaacccgaacacgtaacggaatacccagcaccggacaacccgaccgaatttgtccggactccgtcactcatggagcggctcaggtccatcaacttttcccactacaacttccaacatcactacccggaacccgaacacgtaacggaatacccagcaccggacaacccgaccgaatttgtccggactccgtcactcatggagcggctcaggtccatcaacttttcccactacaacttccaacatcactacccggaacccgaacacgtaacggaatacccagcaccggacaacccgaccgaatttgtccggactccgtcactcatggagcggctcaggtccatcaacttttcccactacaacttccaacatcactacccggaacccgaacacgtaacggaatacccagcaccggacaacccgaccgaatttgtccggactccgtcactcatggagcggctcaggtccatcaacttttcccactacaacttccaacatcactacccggaacccgaacacgtaacggaatacccagcaccggacaacccgaccgaatttgtccggactccgtcactcatggagcggctcaggtccatcaacttttcccagtacgacttccaacaacccgacccggaacccgaacacgtaacagaacacccaacaccggaaaacccgaccggaatagtccggacgccctcgctcctggcccgtctcaagtcaatggatttctcctctctctacagatccgacccggaagctgaagatcttcatccgacagaggccgataaccggaacccgaaaccgaaaccgaagccgacgcgagaccatatggttcatcggaccaagtcggacaggggtcatgaaggttcagaaatccgacccgaaaaggtgataaagaagtccgccagcgagagaggattcgaagaaaacgagggaggtgtccggcagcgaaggggggtggagaaaacgatgtcgtttggagatgatgaagaagttgacgcgaaagctgacgactttattaaccggttcaagcagcagctcaagttacagaggctcgactcgcttttgcgttacagcagaaatgctccacagacactaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

475

Amino Acids

55.92

Weight (kDa)

6.0

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26130 AT5G56980
fragaria_vesca FvH4_1g07560
malus_domestica MD02G1080400.v1.1 MD15G1207800.v1.1
prunus_persica Prupe.7G209100_v2.0.a1
pyrus_communis pycom15g18410
rosa_laevigata RLG00000016403
rosa_multiflora Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006
rosa_roxburghii Rroxscaffold_2G00148090
rosa_rugosa Rorug02G0036200 Rorug02G0036300
rosa_samantha Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400
rosa_wichuraiana Rw2G006470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccBSI CCGCTC 6 cut(s) 277, 403, 529, 655, 781, 907
AccI GTMKAC 1 cut(s) 145
AccII CGCG 2 cut(s) 1144, 1325
AccIII TCCGGA 7 cut(s) 255, 381, 507, 633, 759, 885, 1011
AciI CCGC 9 cut(s) 97, 149, 277, 403, 529, 655, 781, 907, 1227
AclWI GGATC 1 cut(s) 1062
AcsI RAATTY 5 cut(s) 374, 500, 626, 752, 878
AcuI CTGAAG 1 cut(s) 1104
AcyI GRCGYC 1 cut(s) 1016
AfaI GTAC 1 cut(s) 935
AfiI CCNNNNNNNGG 7 cut(s) 358, 484, 610, 736, 862, 988, 1113
AflIII ACRYGT 7 cut(s) 166, 337, 463, 589, 715, 841, 967
AgeI ACCGGT 1 cut(s) 1347
AgsI TTSAA 1 cut(s) 1354
AjnI CCWGG 2 cut(s) 159, 1026
AluBI AGCT 5 cut(s) 8, 30, 1082, 1331, 1363
AluI AGCT 5 cut(s) 8, 30, 1082, 1331, 1363
Alw26I GTCTC 2 cut(s) 1040, 1140
AlwI GGATC 1 cut(s) 1062
Aor13HI TCCGGA 7 cut(s) 255, 381, 507, 633, 759, 885, 1011
AoxI GGCC 2 cut(s) 1029, 1104
ApeKI GCWGC 4 cut(s) 5, 1270, 1357, 1360
ApoI RAATTY 5 cut(s) 374, 500, 626, 752, 878
AsiGI ACCGGT 1 cut(s) 1347
Asp700I GAANNNNTTC 1 cut(s) 1089
AspS9I GGNCC 8 cut(s) 285, 411, 537, 663, 789, 915, 1030, 1164
AsuC2I CCSGG 8 cut(s) 215, 326, 452, 578, 704, 830, 956, 1076
AsuHPI GGTGA 2 cut(s) 203, 1225
AsuII TTCGAA 1 cut(s) 1245
AvaII GGWCC 7 cut(s) 285, 411, 537, 663, 789, 915, 1164
BanI GGYRCC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 4 cut(s) 17, 1282, 1369, 1372
BccI CCATC 8 cut(s) 80, 231, 296, 422, 548, 674, 800, 926
BciT130I CCWGG 2 cut(s) 161, 1028
BcnI CCSGG 8 cut(s) 215, 326, 452, 578, 704, 830, 956, 1076
BcoDI GTCTC 2 cut(s) 1040, 1140
BfmI CTRYAG 1 cut(s) 1063
BglII AGATCT 1 cut(s) 1087
BlpI GCTNAGC 1 cut(s) 26
Bme18I GGWCC 7 cut(s) 285, 411, 537, 663, 789, 915, 1164
BmgT120I GGNCC 8 cut(s) 285, 411, 537, 663, 789, 915, 1030, 1164
BmiI GGNNCC 9 cut(s) 79, 219, 330, 456, 582, 708, 834, 960, 1118
BmrI ACTGGG 1 cut(s) 925
BmuI ACTGGG 1 cut(s) 925
BoxI GACNNNNGTC 1 cut(s) 1179
Bpu10I CCTNAGC 7 cut(s) 114, 281, 407, 533, 659, 785, 911
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 1245
BpuEI CTTGAG 2 cut(s) 1022, 1349
BpuMI CCSGG 8 cut(s) 215, 326, 452, 578, 704, 830, 956, 1076
BsaAI YACGTR 7 cut(s) 229, 340, 466, 592, 718, 844, 970
BsaBI GATNNNNATC 1 cut(s) 1092
BsaHI GRCGYC 1 cut(s) 1016
BsaI GGTCTC 1 cut(s) 1140
Bsc4I CCNNNNNNNGG 7 cut(s) 358, 484, 610, 736, 862, 988, 1113
Bse118I RCCGGY 1 cut(s) 1347
Bse1I ACTGG 2 cut(s) 136, 931
Bse8I GATNNNNATC 1 cut(s) 1092
BseAI TCCGGA 7 cut(s) 255, 381, 507, 633, 759, 885, 1011
BseBI CCWGG 2 cut(s) 161, 1028
BseGI GGATG 1 cut(s) 1093
BseJI GATNNNNATC 1 cut(s) 1092
BseLI CCNNNNNNNGG 7 cut(s) 358, 484, 610, 736, 862, 988, 1113
BseMII CTCAG 8 cut(s) 40, 128, 295, 421, 547, 673, 799, 925
BseNI ACTGG 2 cut(s) 136, 931
BseRI GAGGAG 1 cut(s) 1045
BseXI GCAGC 4 cut(s) 17, 1282, 1369, 1372
BseYI CCCAGC 5 cut(s) 352, 478, 604, 730, 856
Bsh1236I CGCG 2 cut(s) 1144, 1325
Bsh1285I CGRYCG 7 cut(s) 246, 372, 498, 624, 750, 876, 1002
BshFI GGCC 2 cut(s) 1031, 1106
BshNI GGYRCC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 1347
BsiEI CGRYCG 7 cut(s) 246, 372, 498, 624, 750, 876, 1002
BslI CCNNNNNNNGG 7 cut(s) 358, 484, 610, 736, 862, 988, 1113
BsmAI GTCTC 2 cut(s) 1040, 1140
BsmBI CGTCTC 1 cut(s) 1040
BsnI GGCC 2 cut(s) 1031, 1106
Bso31I GGTCTC 1 cut(s) 1140
Bsp119I TTCGAA 1 cut(s) 1245
Bsp13I TCCGGA 7 cut(s) 255, 381, 507, 633, 759, 885, 1011
Bsp143I GATC 3 cut(s) 208, 1067, 1087
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 9 cut(s) 97, 149, 277, 403, 529, 655, 781, 907, 1227
BspANI GGCC 2 cut(s) 1031, 1106
BspCNI CTCAG 8 cut(s) 39, 127, 294, 420, 546, 672, 798, 924
BspEI TCCGGA 7 cut(s) 255, 381, 507, 633, 759, 885, 1011
BspFNI CGCG 2 cut(s) 1144, 1325
BspHI TCATGA 1 cut(s) 1183
BspLI GGNNCC 9 cut(s) 79, 219, 330, 456, 582, 708, 834, 960, 1118
BspPI GGATC 1 cut(s) 1062
BspT104I TTCGAA 1 cut(s) 1245
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 1140
BsrBI CCGCTC 6 cut(s) 277, 403, 529, 655, 781, 907
BsrFI RCCGGY 1 cut(s) 1347
BsrI ACTGG 2 cut(s) 136, 931
BssAI RCCGGY 1 cut(s) 1347
BssMI GATC 3 cut(s) 208, 1067, 1087
BssNI GRCGYC 1 cut(s) 1016
Bst2UI CCWGG 2 cut(s) 161, 1028
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 1016
BstBAI YACGTR 7 cut(s) 229, 340, 466, 592, 718, 844, 970
BstBI TTCGAA 1 cut(s) 1245
BstC8I GCNNGC 2 cut(s) 32, 1231
BstDEI CTNAG 8 cut(s) 26, 114, 281, 407, 533, 659, 785, 911
BstF5I GGATG 1 cut(s) 1093
BstFNI CGCG 2 cut(s) 1144, 1325
BstKTI GATC 3 cut(s) 211, 1070, 1090
BstMAI GTCTC 2 cut(s) 1040, 1140
BstMBI GATC 3 cut(s) 208, 1067, 1087
BstMCI CGRYCG 7 cut(s) 246, 372, 498, 624, 750, 876, 1002
BstMWI GCNNNNNNNGC 3 cut(s) 14, 31, 1384
BstNI CCWGG 2 cut(s) 161, 1028
BstPAI GACNNNNGTC 1 cut(s) 1179
BstSFI CTRYAG 1 cut(s) 1063
BstUI CGCG 2 cut(s) 1144, 1325
BstV1I GCAGC 4 cut(s) 17, 1282, 1369, 1372
BstX2I RGATCY 2 cut(s) 1067, 1087
BstYI RGATCY 2 cut(s) 1067, 1087
BsuRI GGCC 2 cut(s) 1031, 1106
BtsCI GGATG 1 cut(s) 1093
Cac8I GCNNGC 2 cut(s) 32, 1231
CciI TCATGA 1 cut(s) 1183
Cfr10I RCCGGY 1 cut(s) 1347
Cfr13I GGNCC 8 cut(s) 285, 411, 537, 663, 789, 915, 1030, 1164
CseI GACGC 3 cut(s) 1024, 1150, 1331
Csp6I GTAC 1 cut(s) 934
CspAI ACCGGT 1 cut(s) 1347
CviAII CATG 8 cut(s) 22, 271, 397, 523, 649, 775, 901, 1184
CviQI GTAC 1 cut(s) 934
DdeI CTNAG 8 cut(s) 26, 114, 281, 407, 533, 659, 785, 911
DpnI GATC 3 cut(s) 210, 1069, 1089
DpnII GATC 3 cut(s) 208, 1067, 1087
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 1216
Eco31I GGTCTC 1 cut(s) 1140
Eco47I GGWCC 7 cut(s) 285, 411, 537, 663, 789, 915, 1164
Eco57I CTGAAG 1 cut(s) 1104
EcoRII CCWGG 2 cut(s) 159, 1026
Esp3I CGTCTC 1 cut(s) 1040
FaeI CATG 8 cut(s) 25, 274, 400, 526, 652, 778, 904, 1187
FatI CATG 8 cut(s) 21, 270, 396, 522, 648, 774, 900, 1183
FauNDI CATATG 1 cut(s) 1152
FblI GTMKAC 1 cut(s) 145
FokI GGATG 1 cut(s) 1080
GsaI CCCAGC 5 cut(s) 356, 482, 608, 734, 860
HaeIII GGCC 2 cut(s) 1031, 1106
HgaI GACGC 3 cut(s) 1024, 1150, 1331
Hin1I GRCGYC 1 cut(s) 1016
Hin1II CATG 8 cut(s) 25, 274, 400, 526, 652, 778, 904, 1187
HincII GTYRAC 1 cut(s) 1321
HindII GTYRAC 1 cut(s) 1321
HinfI GANTC 8 cut(s) 259, 385, 511, 637, 763, 889, 1242, 1382
HphI GGTGA 2 cut(s) 203, 1225
Hpy166II GTNNAC 2 cut(s) 146, 1321
Hpy188I TCNGA 6 cut(s) 1072, 1098, 1164, 1174, 1195, 1202
Hpy188III TCNNGA 8 cut(s) 256, 382, 508, 634, 760, 886, 1012, 1184
Hpy8I GTNNAC 2 cut(s) 146, 1321
Hpy99I CGWCG 1 cut(s) 1144
HpyAV CCTTC 2 cut(s) 1181, 1269
HpyCH4IV ACGT 8 cut(s) 166, 228, 339, 465, 591, 717, 843, 969
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 31, 1384
HpyF3I CTNAG 8 cut(s) 26, 114, 281, 407, 533, 659, 785, 911
HpySE526I ACGT 8 cut(s) 166, 228, 339, 465, 591, 717, 843, 969
Hsp92I GRCGYC 1 cut(s) 1016
Hsp92II CATG 8 cut(s) 25, 274, 400, 526, 652, 778, 904, 1187
Kpn2I TCCGGA 7 cut(s) 255, 381, 507, 633, 759, 885, 1011
Kzo9I GATC 3 cut(s) 208, 1067, 1087
LmnI GCTCC 9 cut(s) 162, 274, 400, 526, 652, 778, 904, 1029, 1414
Lsp1109I GCAGC 4 cut(s) 17, 1282, 1369, 1372
MaeII ACGT 8 cut(s) 166, 228, 339, 465, 591, 717, 843, 969
MalI GATC 3 cut(s) 210, 1069, 1089
MbiI CCGCTC 6 cut(s) 277, 403, 529, 655, 781, 907
MboI GATC 3 cut(s) 208, 1067, 1087
MboII GAAGA 6 cut(s) 43, 49, 1082, 1097, 1259, 1325
MflI RGATCY 2 cut(s) 1067, 1087
MluCI AATT 6 cut(s) 374, 500, 626, 752, 878, 1423
MlyI GAGTC 7 cut(s) 253, 379, 505, 631, 757, 883, 1376
MroI TCCGGA 7 cut(s) 255, 381, 507, 633, 759, 885, 1011
MroXI GAANNNNTTC 1 cut(s) 1089
MseI TTAA 2 cut(s) 1344, 1426
MspA1I CMGCKG 1 cut(s) 30
MvaI CCWGG 2 cut(s) 161, 1028
MvnI CGCG 2 cut(s) 1144, 1325
MwoI GCNNNNNNNGC 3 cut(s) 14, 31, 1384
NciI CCSGG 8 cut(s) 215, 326, 452, 578, 704, 830, 956, 1076
NdeI CATATG 1 cut(s) 1152
NdeII GATC 3 cut(s) 208, 1067, 1087
NlaIII CATG 8 cut(s) 25, 274, 400, 526, 652, 778, 904, 1187
NlaIV GGNNCC 9 cut(s) 79, 219, 330, 456, 582, 708, 834, 960, 1118
NmuCI GTSAC 6 cut(s) 264, 390, 516, 642, 768, 894
NspV TTCGAA 1 cut(s) 1245
PagI TCATGA 1 cut(s) 1183
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 239, 1251
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 1 cut(s) 1242
PflFI GACNNNGTC 7 cut(s) 262, 388, 514, 640, 766, 892, 1168
PfoI TCCNGGA 1 cut(s) 159
PinAI ACCGGT 1 cut(s) 1347
PleI GAGTC 7 cut(s) 253, 379, 505, 631, 757, 883, 1376
PpsI GAGTC 7 cut(s) 253, 379, 505, 631, 757, 883, 1376
Ppu21I YACGTR 7 cut(s) 229, 340, 466, 592, 718, 844, 970
PshAI GACNNNNGTC 1 cut(s) 1179
Psp6I CCWGG 2 cut(s) 159, 1026
PspFI CCCAGC 5 cut(s) 352, 478, 604, 730, 856
PspGI CCWGG 2 cut(s) 159, 1026
PspN4I GGNNCC 9 cut(s) 79, 219, 330, 456, 582, 708, 834, 960, 1118
PspPI GGNCC 8 cut(s) 285, 411, 537, 663, 789, 915, 1030, 1164
PsuI RGATCY 2 cut(s) 1067, 1087
PsyI GACNNNGTC 7 cut(s) 262, 388, 514, 640, 766, 892, 1168
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 935
RsaNI GTAC 1 cut(s) 934
SaqAI TTAA 2 cut(s) 1344, 1426
Sau3AI GATC 3 cut(s) 208, 1067, 1087
Sau96I GGNCC 8 cut(s) 285, 411, 537, 663, 789, 915, 1030, 1164
SchI GAGTC 7 cut(s) 253, 379, 505, 631, 757, 883, 1376
SfcI CTRYAG 1 cut(s) 1063
SfuI TTCGAA 1 cut(s) 1245
SinI GGWCC 7 cut(s) 285, 411, 537, 663, 789, 915, 1164
SmlI CTYRAG 2 cut(s) 1037, 1364
SmoI CTYRAG 2 cut(s) 1037, 1364
Sse9I AATT 6 cut(s) 374, 500, 626, 752, 878, 1423
SsiI CCGC 9 cut(s) 97, 149, 277, 403, 529, 655, 781, 907, 1227
TaiI ACGT 8 cut(s) 169, 231, 342, 468, 594, 720, 846, 972
TaqI TCGA 3 cut(s) 180, 1245, 1380
TaqII GACCGA 5 cut(s) 386, 512, 638, 764, 890
TasI AATT 6 cut(s) 374, 500, 626, 752, 878, 1423
TauI GCSGC 6 cut(s) 280, 406, 532, 658, 784, 910
TfiI GAWTC 1 cut(s) 1242
Tru1I TTAA 2 cut(s) 1344, 1426
Tru9I TTAA 2 cut(s) 1344, 1426
TseFI GTSAC 6 cut(s) 264, 390, 516, 642, 768, 894
TseI GCWGC 4 cut(s) 5, 1270, 1357, 1360
Tsp45I GTSAC 6 cut(s) 264, 390, 516, 642, 768, 894
TspDTI ATGAA 6 cut(s) 10, 43, 1082, 1148, 1200, 1326
Tth111I GACNNNGTC 7 cut(s) 262, 388, 514, 640, 766, 892, 1168
VpaK11BI GGWCC 7 cut(s) 285, 411, 537, 663, 789, 915, 1164
XapI RAATTY 5 cut(s) 374, 500, 626, 752, 878
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.