Rh2AG082500

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011769
Physical Location & Seq
Forward (+)
7002189 .. 7002464
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG082500.1

Sequence Viewer

Length: 276 bp
ATGGTTCATCGGAGCAAGTCGGACAGGGGTCATGAAGGTTCAGAAATCCGACCCGAAAAGGTGATAAAGAAGTCCGCCAGCGAGAGAGGATTCGAAGAAAACGAGGGAGGTGTCCGACAGCGAAGGGGGGTGGAGAAAACGATGTCGTTTGGAGATGATGAAGAAGTTGACGCGAAAGCTGACGACTTTATTAACCGGTTCAAGCAGCAGCTCAAGTTACAGAGGCTCGACTCGCTTTTGCGTTACAGCAGAAATGCTCCAGAGAAACTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

91

Amino Acids

10.56

Weight (kDa)

9.05

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 53 - 83 3.8e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26130 AT5G56980
fragaria_vesca FvH4_1g07560
malus_domestica MD02G1080400.v1.1 MD15G1207800.v1.1
prunus_persica Prupe.7G209100_v2.0.a1
pyrus_communis pycom15g18410
rosa_laevigata RLG00000016403
rosa_multiflora Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006
rosa_roxburghii Rroxscaffold_2G00148090
rosa_rugosa Rorug02G0036200 Rorug02G0036300
rosa_samantha Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400
rosa_wichuraiana Rw2G006470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 1 cut(s) 75
AgeI ACCGGT 1 cut(s) 195
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 2 cut(s) 179, 211
AluI AGCT 2 cut(s) 179, 211
ApeKI GCWGC 2 cut(s) 205, 208
AsiGI ACCGGT 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 93
BbvI GCAGC 2 cut(s) 217, 220
BisI GCNGC 2 cut(s) 206, 209
BlsI GCNGC 2 cut(s) 207, 210
BoxI GACNNNNGTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 195
BseXI GCAGC 2 cut(s) 217, 220
Bsh1236I CGCG 1 cut(s) 173
BshTI ACCGGT 1 cut(s) 195
BsiSI CCGG 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 93
BspACI CCGC 1 cut(s) 75
BspFNI CGCG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 79
BstFNI CGCG 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstPAI GACNNNNGTC 1 cut(s) 27
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 217, 220
Cac8I GCNNGC 1 cut(s) 79
CciI TCATGA 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 195
CseI GACGC 1 cut(s) 179
CspAI ACCGGT 1 cut(s) 195
CviAII CATG 1 cut(s) 32
CviJI RGCY 3 cut(s) 179, 211, 226
CviKI_1 RGCY 3 cut(s) 179, 211, 226
EciI GGCGGA 1 cut(s) 64
FaeI CATG 1 cut(s) 35
FaiI YATR 1 cut(s) 33
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 206, 209
Fsp4HI GCNGC 2 cut(s) 206, 209
GluI GCNGC 2 cut(s) 206, 209
GsuI CTGGAG 1 cut(s) 243
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 179
Hin1II CATG 1 cut(s) 35
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 90, 230
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 5 cut(s) 12, 22, 43, 50, 116
Hpy188III TCNNGA 2 cut(s) 32, 260
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 29, 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Hsp92II CATG 1 cut(s) 35
LmnI GCTCC 2 cut(s) 12, 262
LpnPI CCDG 3 cut(s) 10, 91, 209
Lsp1109I GCAGC 2 cut(s) 217, 220
MaeIII GTNAC 2 cut(s) 216, 242
MboII GAAGA 2 cut(s) 107, 173
MluCI AATT 1 cut(s) 271
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 73, 139
MnlI CCTC 4 cut(s) 80, 97, 101, 216
MseI TTAA 2 cut(s) 192, 274
MspI CCGG 1 cut(s) 196
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 232
NlaIII CATG 1 cut(s) 35
NspV TTCGAA 1 cut(s) 93
PagI TCATGA 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 195
PkrI GCNGC 2 cut(s) 207, 210
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 192, 274
SatI GCNGC 2 cut(s) 206, 209
SchI GAGTC 1 cut(s) 224
SetI ASST 5 cut(s) 40, 63, 112, 181, 213
SfuI TTCGAA 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 271
SsiI CCGC 1 cut(s) 75
TaqI TCGA 2 cut(s) 93, 228
TasI AATT 1 cut(s) 271
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 2 cut(s) 192, 274
Tru9I TTAA 2 cut(s) 192, 274
TseI GCWGC 2 cut(s) 205, 208
TspDTI ATGAA 2 cut(s) 48, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.