pycom15g18410

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011769
Physical Location & Seq
Forward (+)
13084642 .. 13085547
906 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18410.1

Sequence Viewer

Length: 906 bp
ATGTTGACATCGATGCTCAGCTGGTTCACGCCCACCTCGCTCTTCCTCCTCCTCAACCTCATCATCGGCATCATAGTCCTCAGCTCCCGCCATGGGACCCACAAAAGGCCTCAGCATCAACAACAACTGCAGCAGCAAGAAGAGCAACTCGGCCTGTTCAACTCGCCCCAACTCGAACGAGCCCCCTCATTCTTGGACCGGGTCAGGTCGATAAACTTCTCCCACTACAAATTCGAGCAACCGAACCCGGAAACCCAGTACGCGGCGCCACAACATGCAAATTTAGATAATTCGACCGAGTTAAACCGGACTCCCTCACACCAACTCGAAAGAAGTCCTTCGCTGCTGGACCGGATCCGGTCCATCAACTTTTCCCACCACAAATTCGAACAATCCACCAATCCAGAACCCCAGTCCGGCGAATCAGCAGAACAACAACCTGGTTCGCGTCCGATAGTCTGCGATAGTCCGGTCGGGTTAGCTAGGACACCCTCGCTTTTGGAGCGGCTCAAGTCGATGGATTTCCCATTCTACCGGTCCGAACATGCTGATCCAGAGAATAAAATTTACGAACCGGAGGAGTCCGAACGTGAGGGCCGCGACCTCATTTCGAGACAAGAAAACTTGGTTCATCGGAGTAAGTCGAACCCGAGTAATGGGGCTCGGGTAAACCAGCACGAGAAGATAAAAAAGTCGACTAGCGAGAAATCGCGGCTCCGAGGAGGGGTTGAAGGAAACGACGACGAAAGGCCTGCGACACGTCGGATGGAGAAAACGAGGTCGTTTGGAGGCGATGAAGCGGTTGACGCGAAAGCTGACGACTTCATAAACAGGTTTAAGCAGCAGCTGAGACTGCAGAGGCTCGACTCGCTCTTACGTTACAAAGAAATGCTTAAAAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

302

Amino Acids

34.79

Weight (kDa)

8.92

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 2 - 30 2e-11 Domain of unknown function (DUF4408)
DUF761 PF05553 265 - 300 2.8e-17 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26130 AT5G56980
fragaria_vesca FvH4_1g07560
malus_domestica MD02G1080400.v1.1 MD15G1207800.v1.1
prunus_persica Prupe.7G209100_v2.0.a1
pyrus_communis pycom15g18410
rosa_laevigata RLG00000016403
rosa_multiflora Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006
rosa_roxburghii Rroxscaffold_2G00148090
rosa_rugosa Rorug02G0036200 Rorug02G0036300
rosa_samantha Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400
rosa_wichuraiana Rw2G006470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 695
AccII CGCG 5 cut(s) 263, 448, 600, 712, 809
AciI CCGC 6 cut(s) 88, 263, 505, 598, 712, 800
AclWI GGATC 3 cut(s) 349, 362, 545
AcsI RAATTY 4 cut(s) 230, 280, 383, 564
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 6 cut(s) 93, 105, 262, 416, 656, 724
AflIII ACRYGT 1 cut(s) 758
AgeI ACCGGT 1 cut(s) 534
AgsI TTSAA 2 cut(s) 160, 731
AjiI CACGTC 1 cut(s) 761
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 5 cut(s) 21, 84, 482, 815, 847
AluI AGCT 5 cut(s) 21, 84, 482, 815, 847
Alw26I GTCTC 2 cut(s) 607, 844
AlwI GGATC 3 cut(s) 349, 362, 545
AlwNI CAGNNNCTG 1 cut(s) 847
Ama87I CYCGRG 2 cut(s) 649, 663
AoxI GGCC 4 cut(s) 107, 151, 595, 749
ApeKI GCWGC 5 cut(s) 130, 133, 343, 841, 844
ApoI RAATTY 4 cut(s) 230, 280, 383, 564
AsiGI ACCGGT 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 6 cut(s) 96, 196, 349, 360, 537, 595
AsuC2I CCSGG 2 cut(s) 200, 248
AsuII TTCGAA 1 cut(s) 387
AvaI CYCGRG 2 cut(s) 649, 663
AvaII GGWCC 5 cut(s) 96, 196, 349, 360, 537
BamHI GGATCC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 2 cut(s) 184, 664
BauI CACGAG 1 cut(s) 677
BbvCI CCTCAGC 2 cut(s) 80, 111
BbvI GCAGC 5 cut(s) 142, 145, 330, 853, 856
BccI CCATC 3 cut(s) 371, 511, 760
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 441
BcnI CCSGG 2 cut(s) 200, 248
BcoDI GTCTC 2 cut(s) 607, 844
BfaI CTAG 2 cut(s) 483, 699
BfmI CTRYAG 2 cut(s) 128, 854
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 9 cut(s) 131, 134, 264, 344, 506, 598, 713, 842, 845
BlpI GCTNAGC 1 cut(s) 17
BlsI GCNGC 9 cut(s) 132, 135, 265, 345, 507, 599, 714, 843, 846
Bme1390I CCNGG 3 cut(s) 200, 248, 441
Bme18I GGWCC 5 cut(s) 96, 196, 349, 360, 537
BmeT110I CYCGRG 2 cut(s) 649, 663
BmgBI CACGTC 1 cut(s) 761
BmgT120I GGNCC 6 cut(s) 96, 196, 349, 360, 537, 595
BmiI GGNNCC 5 cut(s) 97, 98, 267, 356, 716
BmrFI CCNGG 3 cut(s) 200, 248, 441
BmrI ACTGGG 2 cut(s) 250, 406
BmsI GCATC 3 cut(s) 3, 78, 124
BmuI ACTGGG 2 cut(s) 250, 406
Bpu10I CCTNAGC 2 cut(s) 80, 111
Bpu1102I GCTNAGC 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 2 cut(s) 200, 248
Bsa29I ATCGAT 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 91, 718
BsaWI WCCGGW 6 cut(s) 306, 351, 357, 469, 534, 574
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 105, 262, 416, 656, 724
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 2 cut(s) 256, 412
BseBI CCWGG 1 cut(s) 441
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 91, 718
BseGI GGATG 1 cut(s) 771
BseLI CCNNNNNNNGG 6 cut(s) 93, 105, 262, 416, 656, 724
BseMII CTCAG 4 cut(s) 31, 94, 125, 839
BseNI ACTGG 2 cut(s) 256, 412
BseRI GAGGAG 4 cut(s) 38, 41, 593, 735
BseXI GCAGC 5 cut(s) 142, 145, 330, 853, 856
Bsh1236I CGCG 5 cut(s) 263, 448, 600, 712, 809
Bsh1285I CGRYCG 2 cut(s) 297, 474
BshFI GGCC 4 cut(s) 109, 153, 597, 751
BshNI GGYRCC 1 cut(s) 265
BshTI ACCGGT 1 cut(s) 534
BshVI ATCGAT 1 cut(s) 11
BsiEI CGRYCG 2 cut(s) 297, 474
BsiHKCI CYCGRG 2 cut(s) 649, 663
BsiSI CCGG 9 cut(s) 199, 248, 307, 352, 358, 417, 470, 535, 575
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 6 cut(s) 93, 105, 262, 416, 656, 724
BsmAI GTCTC 2 cut(s) 607, 844
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 4 cut(s) 109, 153, 597, 751
BsoBI CYCGRG 2 cut(s) 649, 663
Bsp119I TTCGAA 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 184, 664
Bsp143I GATC 2 cut(s) 354, 550
Bsp1720I GCTNAGC 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 6 cut(s) 88, 263, 505, 598, 712, 800
BspANI GGCC 4 cut(s) 109, 153, 597, 751
BspCNI CTCAG 4 cut(s) 30, 93, 124, 840
BspDI ATCGAT 1 cut(s) 11
BspFNI CGCG 5 cut(s) 263, 448, 600, 712, 809
BspLI GGNNCC 5 cut(s) 97, 98, 267, 356, 716
BspMAI CTGCAG 2 cut(s) 132, 858
BspPI GGATC 3 cut(s) 349, 362, 545
BspQI GCTCTTC 2 cut(s) 47, 135
BspT104I TTCGAA 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 534
BsrI ACTGG 2 cut(s) 256, 412
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 2 cut(s) 91, 718
BssMI GATC 2 cut(s) 354, 550
BssNI GRCGYC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 677
BssT1I CCWWGG 1 cut(s) 91
Bst2BI CACGAG 1 cut(s) 677
Bst2UI CCWGG 1 cut(s) 441
Bst6I CTCTTC 2 cut(s) 47, 135
BstACI GRCGYC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 4 cut(s) 17, 80, 111, 848
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 771
BstFNI CGCG 5 cut(s) 263, 448, 600, 712, 809
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 2 cut(s) 357, 553
BstMAI GTCTC 2 cut(s) 607, 844
BstMBI GATC 2 cut(s) 354, 550
BstMCI CGRYCG 2 cut(s) 297, 474
BstMWI GCNNNNNNNGC 6 cut(s) 37, 142, 502, 806, 853, 868
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 2 cut(s) 278, 548
BstSCI CCNGG 3 cut(s) 198, 246, 439
BstSFI CTRYAG 2 cut(s) 128, 854
BstUI CGCG 5 cut(s) 263, 448, 600, 712, 809
BstV1I GCAGC 5 cut(s) 142, 145, 330, 853, 856
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
Bsu15I ATCGAT 1 cut(s) 11
BsuRI GGCC 4 cut(s) 109, 153, 597, 751
BsuTUI ATCGAT 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 761
BtsCI GGATG 1 cut(s) 771
Cac8I GCNNGC 1 cut(s) 753
CaiI CAGNNNCTG 1 cut(s) 847
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 534
Cfr13I GGNCC 6 cut(s) 96, 196, 349, 360, 537, 595
ClaI ATCGAT 1 cut(s) 11
CpoI CGGWCCG 1 cut(s) 537
CseI GACGC 2 cut(s) 437, 815
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 1 cut(s) 259
CspAI ACCGGT 1 cut(s) 534
CspI CGGWCCG 1 cut(s) 537
CviAII CATG 3 cut(s) 92, 275, 545
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 4 cut(s) 17, 80, 111, 848
DinI GGCGCC 1 cut(s) 267
DpnI GATC 2 cut(s) 356, 552
DpnII GATC 2 cut(s) 354, 550
Eam1104I CTCTTC 2 cut(s) 47, 135
EarI CTCTTC 2 cut(s) 47, 135
Eco130I CCWWGG 1 cut(s) 91
Eco147I AGGCCT 2 cut(s) 109, 751
Eco24I GRGCYC 2 cut(s) 184, 664
Eco47I GGWCC 5 cut(s) 96, 196, 349, 360, 537
Eco88I CYCGRG 2 cut(s) 649, 663
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 2 cut(s) 184, 664
EgeI GGCGCC 1 cut(s) 267
EheI GGCGCC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 95, 278, 548
FaiI YATR 5 cut(s) 74, 93, 276, 546, 827
FalI AAGNNNNNCTT 3 cut(s) 322, 354, 876
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 91, 274, 544
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 695
Fnu4HI GCNGC 9 cut(s) 131, 134, 264, 344, 506, 598, 713, 842, 845
FokI GGATG 1 cut(s) 778
FriOI GRGCYC 2 cut(s) 184, 664
Fsp4HI GCNGC 9 cut(s) 131, 134, 264, 344, 506, 598, 713, 842, 845
FspBI CTAG 2 cut(s) 483, 699
GlaI GCGC 1 cut(s) 267
GluI GCNGC 9 cut(s) 131, 134, 264, 344, 506, 598, 713, 842, 845
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 4 cut(s) 109, 153, 597, 751
HapII CCGG 9 cut(s) 199, 248, 307, 352, 358, 417, 470, 535, 575
HgaI GACGC 2 cut(s) 437, 815
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 3 cut(s) 95, 278, 548
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 3 cut(s) 6, 696, 805
HindII GTYRAC 3 cut(s) 6, 696, 805
HinfI GANTC 4 cut(s) 310, 422, 581, 866
HpaII CCGG 9 cut(s) 199, 248, 307, 352, 358, 417, 470, 535, 575
Hpy166II GTNNAC 5 cut(s) 6, 27, 670, 696, 805
Hpy188I TCNGA 6 cut(s) 453, 541, 586, 636, 719, 765
Hpy188III TCNNGA 3 cut(s) 404, 554, 612
Hpy8I GTNNAC 5 cut(s) 6, 27, 670, 696, 805
Hpy99I CGWCG 3 cut(s) 743, 746, 765
HpyAV CCTTC 2 cut(s) 348, 725
HpyCH4IV ACGT 3 cut(s) 589, 760, 877
HpyCH4V TGCA 3 cut(s) 130, 278, 856
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 142, 502, 806, 853, 868
HpyF3I CTNAG 4 cut(s) 17, 80, 111, 848
HpySE526I ACGT 3 cut(s) 589, 760, 877
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 3 cut(s) 95, 278, 548
HspAI GCGC 1 cut(s) 266
KasI GGCGCC 1 cut(s) 265
KflI GGGWCCC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 354, 550
LguI GCTCTTC 2 cut(s) 47, 135
LmnI GCTCC 3 cut(s) 89, 502, 720
Lsp1109I GCAGC 5 cut(s) 142, 145, 330, 853, 856
LweI GCATC 3 cut(s) 3, 78, 124
MabI ACCWGGT 1 cut(s) 439
MaeI CTAG 2 cut(s) 483, 699
MaeII ACGT 3 cut(s) 589, 760, 877
MaeIII GTNAC 1 cut(s) 878
MalI GATC 2 cut(s) 356, 552
MbiI CCGCTC 1 cut(s) 505
MboI GATC 2 cut(s) 354, 550
MboII GAAGA 3 cut(s) 34, 152, 694
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 2 cut(s) 184, 664
MluCI AATT 6 cut(s) 230, 280, 289, 383, 564, 901
Mly113I GGCGCC 1 cut(s) 266
MlyI GAGTC 3 cut(s) 304, 590, 860
MmeI TCCRAC 1 cut(s) 743
MroXI GAANNNNTTC 1 cut(s) 337
MseI TTAA 4 cut(s) 302, 837, 894, 904
MspA1I CMGCKG 2 cut(s) 21, 847
MspI CCGG 9 cut(s) 199, 248, 307, 352, 358, 417, 470, 535, 575
MspR9I CCNGG 3 cut(s) 200, 248, 441
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 5 cut(s) 263, 448, 600, 712, 809
MwoI GCNNNNNNNGC 6 cut(s) 37, 142, 502, 806, 853, 868
NarI GGCGCC 1 cut(s) 266
NciI CCSGG 2 cut(s) 200, 248
NcoI CCATGG 1 cut(s) 91
NdeII GATC 2 cut(s) 354, 550
NlaIII CATG 3 cut(s) 95, 278, 548
NlaIV GGNNCC 5 cut(s) 97, 98, 267, 356, 716
NmeAIII GCCGAG 1 cut(s) 129
NspI RCATGY 2 cut(s) 278, 548
NspV TTCGAA 1 cut(s) 387
PceI AGGCCT 2 cut(s) 109, 751
PciSI GCTCTTC 2 cut(s) 47, 135
PdmI GAANNNNTTC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 422
PflFI GACNNNGTC 1 cut(s) 200
PinAI ACCGGT 1 cut(s) 534
PkrI GCNGC 9 cut(s) 132, 135, 265, 345, 507, 599, 714, 843, 846
PleI GAGTC 3 cut(s) 304, 589, 860
PluTI GGCGCC 1 cut(s) 269
PpsI GAGTC 3 cut(s) 304, 589, 860
PpuMI RGGWCCY 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 5 cut(s) 97, 98, 267, 356, 716
PspPI GGNCC 6 cut(s) 96, 196, 349, 360, 537, 595
PspPPI RGGWCCY 1 cut(s) 96
PstI CTGCAG 2 cut(s) 132, 858
PstNI CAGNNNCTG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 354
PsyI GACNNNGTC 1 cut(s) 200
PvuII CAGCTG 2 cut(s) 21, 847
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
Rsr2I CGGWCCG 1 cut(s) 537
RsrII CGGWCCG 1 cut(s) 537
SalI GTCGAC 1 cut(s) 694
SapI GCTCTTC 2 cut(s) 47, 135
SaqAI TTAA 4 cut(s) 302, 837, 894, 904
SatI GCNGC 9 cut(s) 131, 134, 264, 344, 506, 598, 713, 842, 845
Sau3AI GATC 2 cut(s) 354, 550
Sau96I GGNCC 6 cut(s) 96, 196, 349, 360, 537, 595
SchI GAGTC 3 cut(s) 304, 590, 860
ScrFI CCNGG 3 cut(s) 200, 248, 441
SduI GDGCHC 2 cut(s) 184, 664
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 3 cut(s) 3, 78, 124
SfcI CTRYAG 2 cut(s) 128, 854
SfoI GGCGCC 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 387
SinI GGWCC 5 cut(s) 96, 196, 349, 360, 537
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 6 cut(s) 230, 280, 289, 383, 564, 901
SseBI AGGCCT 2 cut(s) 109, 751
SsiI CCGC 6 cut(s) 88, 263, 505, 598, 712, 800
SspDI GGCGCC 1 cut(s) 265
SspMI CTAG 2 cut(s) 483, 699
StuI AGGCCT 2 cut(s) 109, 751
StyD4I CCNGG 3 cut(s) 198, 246, 439
StyI CCWWGG 1 cut(s) 91
TaiI ACGT 3 cut(s) 592, 763, 880
TaqII GACCGA 1 cut(s) 311
TasI AATT 6 cut(s) 230, 280, 289, 383, 564, 901
TauI GCSGC 4 cut(s) 266, 508, 600, 715
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 4 cut(s) 302, 837, 894, 904
Tru9I TTAA 4 cut(s) 302, 837, 894, 904
TseI GCWGC 5 cut(s) 130, 133, 343, 841, 844
TspDTI ATGAA 3 cut(s) 620, 810, 814
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 5 cut(s) 96, 196, 349, 360, 537
XapI RAATTY 4 cut(s) 230, 280, 383, 564
XceI RCATGY 2 cut(s) 278, 548
XmiI GTMKAC 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 337
XspI CTAG 2 cut(s) 483, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.