AT5G56980

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011769
Physical Location & Seq
Reverse (-)
23056080 .. 23057742
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56980.1

Sequence Viewer

Length: 1140 bp
ATGGAGTTACTAACGACGGTCGCGAGCTTTTTCACTCCGACGACTCTTTTCCTCCTTCTTAATCTTATGATCGGTACAATCGTCGTAACCTCTCGACTCGGGTCAGGTTCAAGAAAACATTACCAGCATCACGATGGATTCGGGTCAGGTCATGCTCCGGCTCCGTTAGCTAGAGCTCCATCGATTATCGACCGAGTCAAGTCCATCAATTTTCATCTCTACAAATTTCCTCATCCAGAAACTGAGCTTTTCTCGATGACAGCTCACCACGACATAATCGGGTCGGATCTTCATGTTTACCCGGATCCAAATCCGGCTCCGTTACAACGTGCTCCTTCTCTTTTGGATCGGGTCAAATCTATCAACATGTCTTATTTCAAGTTCCCACACGACGTAACCGGGTCGGATCCTCACTCCCACTCCCACTCCCACCTAGATTTACACCCGGATCCGGCTCCGGCACCGTTACAACGAGCTCCTTCTCTTCTGGATCGGGTCAAATCCATCAACATGTCATACTTCAAATTCCAGCAGTATAACCCGGAGGAGAATGATTATGCTCATCACACAGAACCGACCCGATTCGAAAGTATTCCGACCCGGATGGGTCGGGTTGACCCGATTGATATCTCAAAATTCAGAATCCCGGAAGAAGATCAACCAACCGGAACCGGAGTGAACAGTCAAATTAACCCGCCCGGTTTAACTCGAGCTCCGTCTATCTTAGAACGGGTCAAATCCATTAAGCTATCCTCCTTCTACAGATCCGACCCGGATTTGGATCAAAAACAAAATCCGGATCCGGTTCTTCACGAGGAGCACAAGCATGTACGAAGCAAATCGGAATCGAAAAAACCGGTGAAGAAGAAGAAGAAAGCTTTAACGAAGATGACAAAATCGGCTAGCGAGAAATCAGGTTTTGGTTTCGCAGGAAGCCATGCGGAAGCGCCGGAGACGGTGGAATCCCTCGAACGGAGAAGACCAGATACAACGAGAGTCGAAAGATCGACGTCTTTCGGCGACGGCGAAGATGGCGTCGACGCGAAAGCTTCAGATTTCATCAACAAATTCAAACAGCAGCTGAAATTACAGAGACTCGATTCGATTCTGAGGTACAAGGAGATGCTTAAGGCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

379

Amino Acids

42.73

Weight (kDa)

9.18

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 3 - 33 3.3e-10 Domain of unknown function (DUF4408)
DUF761 PF05553 344 - 377 4.1e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26130 AT5G56980
fragaria_vesca FvH4_1g07560
malus_domestica MD02G1080400.v1.1 MD15G1207800.v1.1
prunus_persica Prupe.7G209100_v2.0.a1
pyrus_communis pycom15g18410
rosa_laevigata RLG00000016403
rosa_multiflora Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006
rosa_roxburghii Rroxscaffold_2G00148090
rosa_rugosa Rorug02G0036200 Rorug02G0036300
rosa_samantha Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400
rosa_wichuraiana Rw2G006470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 2 cut(s) 23, 1043
AccIII TCCGGA 1 cut(s) 796
AciI CCGC 2 cut(s) 695, 941
AcsI RAATTY 4 cut(s) 224, 524, 635, 1067
AcuI CTGAAG 1 cut(s) 1035
AcyI GRCGYC 2 cut(s) 1010, 1035
AfaI GTAC 3 cut(s) 76, 831, 1115
AfiI CCNNNNNNNGG 3 cut(s) 451, 778, 972
AflII CTTAAG 1 cut(s) 1127
AflIII ACRYGT 2 cut(s) 366, 510
AgeI ACCGGT 1 cut(s) 856
AgsI TTSAA 4 cut(s) 111, 379, 523, 1072
Alw21I GWGCWC 5 cut(s) 178, 334, 478, 715, 822
Alw26I GTCTC 2 cut(s) 947, 1087
AlwNI CAGNNNCTG 2 cut(s) 242, 1081
Ama87I CYCGRG 2 cut(s) 98, 708
Aor13HI TCCGGA 1 cut(s) 796
AoxI GGCC 1 cut(s) 1131
ApeKI GCWGC 1 cut(s) 1078
ApoI RAATTY 4 cut(s) 224, 524, 635, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 1020, 1052
AsiGI ACCGGT 1 cut(s) 856
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 949
AspS9I GGNCC 1 cut(s) 1132
AsuC2I CCSGG 8 cut(s) 302, 400, 446, 542, 601, 647, 699, 773
AsuHPI GGTGA 2 cut(s) 257, 871
AsuII TTCGAA 1 cut(s) 585
AsuNHI GCTAGC 1 cut(s) 902
AvaI CYCGRG 2 cut(s) 98, 708
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BamHI GGATCC 4 cut(s) 304, 406, 448, 799
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 3 cut(s) 178, 478, 715
BarI GAAGNNNNNNTAC 2 cut(s) 970, 1002
BauI CACGAG 1 cut(s) 812
BbsI GAAGAC 1 cut(s) 985
Bbv12I GWGCWC 5 cut(s) 178, 334, 478, 715, 822
BbvI GCAGC 1 cut(s) 1090
BccI CCATC 6 cut(s) 128, 187, 212, 512, 598, 1025
BceAI ACGGC 1 cut(s) 1039
BcnI CCSGG 8 cut(s) 302, 400, 446, 542, 601, 647, 699, 773
BcoDI GTCTC 2 cut(s) 947, 1087
BfaI CTAG 3 cut(s) 171, 434, 903
BfmI CTRYAG 1 cut(s) 760
BfoI RGCGCY 1 cut(s) 950
BfrI CTTAAG 1 cut(s) 1127
BisI GCNGC 1 cut(s) 1079
BlsI GCNGC 1 cut(s) 1080
Bme1390I CCNGG 8 cut(s) 302, 400, 446, 542, 601, 647, 699, 773
BmeT110I CYCGRG 2 cut(s) 98, 708
BmgT120I GGNCC 1 cut(s) 1132
BmiI GGNNCC 9 cut(s) 162, 306, 318, 408, 450, 456, 462, 670, 801
BmrFI CCNGG 8 cut(s) 302, 400, 446, 542, 601, 647, 699, 773
BmsI GCATC 2 cut(s) 136, 1113
BmtI GCTAGC 1 cut(s) 906
BoxI GACNNNNGTC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 985
BplI GAGNNNNNCTC 2 cut(s) 236, 268
Bpu14I TTCGAA 1 cut(s) 585
BpuMI CCSGG 8 cut(s) 302, 400, 446, 542, 601, 647, 699, 773
Bsa29I ATCGAT 1 cut(s) 182
BsaBI GATNNNNATC 3 cut(s) 309, 626, 780
BsaHI GRCGYC 2 cut(s) 1010, 1035
BsaWI WCCGGW 5 cut(s) 665, 671, 796, 802, 856
BsaXI ACNNNNNCTCC 6 cut(s) 404, 410, 434, 440, 697, 727
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 778, 972
Bse118I RCCGGY 1 cut(s) 856
Bse8I GATNNNNATC 3 cut(s) 309, 626, 780
BseAI TCCGGA 1 cut(s) 796
BseCI ATCGAT 1 cut(s) 182
BseGI GGATG 2 cut(s) 232, 609
BseJI GATNNNNATC 3 cut(s) 309, 626, 780
BseLI CCNNNNNNNGG 3 cut(s) 451, 778, 972
BseMII CTCAG 2 cut(s) 234, 1100
BseRI GAGGAG 2 cut(s) 560, 830
BseXI GCAGC 1 cut(s) 1090
Bsh1236I CGCG 2 cut(s) 23, 1043
Bsh1285I CGRYCG 2 cut(s) 21, 193
BshFI GGCC 1 cut(s) 1133
BshNI GGYRCC 1 cut(s) 460
BshTI ACCGGT 1 cut(s) 856
BshVI ATCGAT 1 cut(s) 182
BsiEI CGRYCG 2 cut(s) 21, 193
BsiHKAI GWGCWC 5 cut(s) 178, 334, 478, 715, 822
BsiHKCI CYCGRG 2 cut(s) 98, 708
BslI CCNNNNNNNGG 3 cut(s) 451, 778, 972
BsmAI GTCTC 2 cut(s) 947, 1087
BsmBI CGTCTC 1 cut(s) 947
BsnI GGCC 1 cut(s) 1133
BsoBI CYCGRG 2 cut(s) 98, 708
Bsp119I TTCGAA 1 cut(s) 585
Bsp1286I GDGCHC 5 cut(s) 178, 334, 478, 715, 822
Bsp13I TCCGGA 1 cut(s) 796
Bsp68I TCGCGA 1 cut(s) 23
BspACI CCGC 2 cut(s) 695, 941
BspANI GGCC 1 cut(s) 1133
BspCNI CTCAG 2 cut(s) 235, 1101
BspDI ATCGAT 1 cut(s) 182
BspEI TCCGGA 1 cut(s) 796
BspFNI CGCG 2 cut(s) 23, 1043
BspLI GGNNCC 9 cut(s) 162, 306, 318, 408, 450, 456, 462, 670, 801
BspOI GCTAGC 1 cut(s) 906
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 1 cut(s) 460
BspTI CTTAAG 1 cut(s) 1127
BsrFI RCCGGY 1 cut(s) 856
BssAI RCCGGY 1 cut(s) 856
BssNI GRCGYC 2 cut(s) 1010, 1035
BssSI CACGAG 1 cut(s) 812
Bst2BI CACGAG 1 cut(s) 812
Bst4CI ACNGT 4 cut(s) 19, 465, 683, 958
Bst6I CTCTTC 1 cut(s) 489
BstACI GRCGYC 2 cut(s) 1010, 1035
BstAFI CTTAAG 1 cut(s) 1127
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 25, 904
BstDEI CTNAG 3 cut(s) 243, 724, 1109
BstF5I GGATG 2 cut(s) 232, 609
BstFNI CGCG 2 cut(s) 23, 1043
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 1 cut(s) 949
BstMAI GTCTC 2 cut(s) 947, 1087
BstMCI CGRYCG 2 cut(s) 21, 193
BstMWI GCNNNNNNNGC 2 cut(s) 167, 1032
BstNSI RCATGY 3 cut(s) 370, 514, 830
BstPAI GACNNNNGTC 1 cut(s) 100
BstSCI CCNGG 8 cut(s) 300, 398, 444, 540, 599, 645, 697, 771
BstSFI CTRYAG 1 cut(s) 760
BstUI CGCG 2 cut(s) 23, 1043
BstV1I GCAGC 1 cut(s) 1090
BstV2I GAAGAC 1 cut(s) 985
BstX2I RGATCY 6 cut(s) 286, 304, 406, 448, 764, 799
BstYI RGATCY 6 cut(s) 286, 304, 406, 448, 764, 799
Bsu15I ATCGAT 1 cut(s) 182
BsuRI GGCC 1 cut(s) 1133
BsuTUI ATCGAT 1 cut(s) 182
BtsCI GGATG 2 cut(s) 232, 609
BtuMI TCGCGA 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 25, 904
CaiI CAGNNNCTG 2 cut(s) 242, 1081
CfoI GCGC 1 cut(s) 949
Cfr10I RCCGGY 1 cut(s) 856
Cfr13I GGNCC 1 cut(s) 1132
ClaI ATCGAT 1 cut(s) 182
CseI GACGC 2 cut(s) 1024, 1049
Csp6I GTAC 3 cut(s) 75, 830, 1114
CspAI ACCGGT 1 cut(s) 856
CviAII CATG 6 cut(s) 152, 293, 367, 511, 827, 938
CviQI GTAC 3 cut(s) 75, 830, 1114
DdeI CTNAG 3 cut(s) 243, 724, 1109
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Ecl136II GAGCTC 3 cut(s) 176, 476, 713
Eco24I GRGCYC 3 cut(s) 178, 478, 715
Eco32I GATATC 1 cut(s) 628
Eco53kI GAGCTC 3 cut(s) 176, 476, 713
Eco57I CTGAAG 1 cut(s) 1035
Eco88I CYCGRG 2 cut(s) 98, 708
EcoICRI GAGCTC 3 cut(s) 176, 476, 713
EcoRV GATATC 1 cut(s) 628
EcoT38I GRGCYC 3 cut(s) 178, 478, 715
Esp3I CGTCTC 1 cut(s) 947
FaeI CATG 6 cut(s) 155, 296, 370, 514, 830, 941
FatI CATG 6 cut(s) 151, 292, 366, 510, 826, 937
FauI CCCGC 1 cut(s) 702
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 1 cut(s) 1079
FokI GGATG 2 cut(s) 219, 616
FriOI GRGCYC 3 cut(s) 178, 478, 715
Fsp4HI GCNGC 1 cut(s) 1079
FspBI CTAG 3 cut(s) 171, 434, 903
GlaI GCGC 1 cut(s) 948
GluI GCNGC 1 cut(s) 1079
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 1 cut(s) 1133
HgaI GACGC 2 cut(s) 1024, 1049
HhaI GCGC 1 cut(s) 949
Hin1I GRCGYC 2 cut(s) 1010, 1035
Hin1II CATG 6 cut(s) 155, 296, 370, 514, 830, 941
Hin6I GCGC 1 cut(s) 947
HinP1I GCGC 1 cut(s) 947
HincII GTYRAC 2 cut(s) 616, 1039
HindII GTYRAC 2 cut(s) 616, 1039
HindIII AAGCTT 2 cut(s) 876, 1047
HphI GGTGA 2 cut(s) 257, 871
Hpy166II GTNNAC 4 cut(s) 298, 616, 679, 1039
Hpy188I TCNGA 9 cut(s) 39, 286, 406, 597, 641, 769, 844, 1054, 1110
Hpy188III TCNNGA 9 cut(s) 22, 93, 111, 131, 236, 253, 488, 797, 812
Hpy8I GTNNAC 4 cut(s) 298, 616, 679, 1039
Hpy99I CGWCG 8 cut(s) 19, 43, 86, 395, 1012, 1025, 1040, 1043
HpyAV CCTTC 4 cut(s) 65, 345, 489, 766
HpyCH4III ACNGT 4 cut(s) 19, 465, 683, 958
HpyCH4IV ACGT 3 cut(s) 328, 393, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 1032
HpyF3I CTNAG 3 cut(s) 243, 724, 1109
HpySE526I ACGT 3 cut(s) 328, 393, 1010
Hsp92I GRCGYC 2 cut(s) 1010, 1035
Hsp92II CATG 6 cut(s) 155, 296, 370, 514, 830, 941
HspAI GCGC 1 cut(s) 947
Kpn2I TCCGGA 1 cut(s) 796
LmnI GCTCC 9 cut(s) 160, 166, 181, 322, 337, 460, 481, 718, 817
Lsp1109I GCAGC 1 cut(s) 1090
LweI GCATC 2 cut(s) 136, 1113
MaeI CTAG 3 cut(s) 171, 434, 903
MaeII ACGT 3 cut(s) 328, 393, 1010
MaeIII GTNAC 5 cut(s) 6, 85, 321, 394, 465
MflI RGATCY 6 cut(s) 286, 304, 406, 448, 764, 799
MhlI GDGCHC 5 cut(s) 178, 334, 478, 715, 822
MluCI AATT 7 cut(s) 208, 224, 524, 635, 687, 1067, 1085
MlyI GAGTC 5 cut(s) 37, 90, 204, 1005, 1089
MmeI TCCRAC 5 cut(s) 62, 264, 384, 620, 792
MnlI CCTC 9 cut(s) 62, 100, 240, 420, 538, 763, 808, 977, 1104
MroI TCCGGA 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 6 cut(s) 60, 690, 704, 744, 881, 1128
MslI CAYNNNNRTG 3 cut(s) 132, 509, 825
MspA1I CMGCKG 1 cut(s) 1081
MspCI CTTAAG 1 cut(s) 1127
MspR9I CCNGG 8 cut(s) 302, 400, 446, 542, 601, 647, 699, 773
MvnI CGCG 2 cut(s) 23, 1043
MwoI GCNNNNNNNGC 2 cut(s) 167, 1032
NciI CCSGG 8 cut(s) 302, 400, 446, 542, 601, 647, 699, 773
NheI GCTAGC 1 cut(s) 902
NlaIII CATG 6 cut(s) 155, 296, 370, 514, 830, 941
NlaIV GGNNCC 9 cut(s) 162, 306, 318, 408, 450, 456, 462, 670, 801
NruI TCGCGA 1 cut(s) 23
NspI RCATGY 3 cut(s) 370, 514, 830
NspV TTCGAA 1 cut(s) 585
PaeR7I CTCGAG 1 cut(s) 708
PciI ACATGT 2 cut(s) 366, 510
PcsI WCGNNNNNNNCGW 3 cut(s) 20, 78, 1023
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 7 cut(s) 138, 582, 642, 845, 962, 1100, 1105
PflFI GACNNNGTC 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 645
PinAI ACCGGT 1 cut(s) 856
PkrI GCNGC 1 cut(s) 1080
PleI GAGTC 5 cut(s) 37, 90, 203, 1004, 1089
PpsI GAGTC 5 cut(s) 37, 90, 203, 1004, 1089
PscI ACATGT 2 cut(s) 366, 510
PshAI GACNNNNGTC 1 cut(s) 100
Psp124BI GAGCTC 3 cut(s) 178, 478, 715
PspN4I GGNNCC 9 cut(s) 162, 306, 318, 408, 450, 456, 462, 670, 801
PspPI GGNCC 1 cut(s) 1132
PspXI VCTCGAGB 1 cut(s) 708
PstNI CAGNNNCTG 2 cut(s) 242, 1081
PsuI RGATCY 6 cut(s) 286, 304, 406, 448, 764, 799
PsyI GACNNNGTC 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 1081
RruI TCGCGA 1 cut(s) 23
RsaI GTAC 3 cut(s) 76, 831, 1115
RsaNI GTAC 3 cut(s) 75, 830, 1114
RseI CAYNNNNRTG 3 cut(s) 132, 509, 825
SacI GAGCTC 3 cut(s) 178, 478, 715
SalI GTCGAC 1 cut(s) 1037
SaqAI TTAA 6 cut(s) 60, 690, 704, 744, 881, 1128
SatI GCNGC 1 cut(s) 1079
Sau96I GGNCC 1 cut(s) 1132
SchI GAGTC 5 cut(s) 37, 90, 204, 1005, 1089
ScrFI CCNGG 8 cut(s) 302, 400, 446, 542, 601, 647, 699, 773
SduI GDGCHC 5 cut(s) 178, 334, 478, 715, 822
SfaNI GCATC 2 cut(s) 136, 1113
SfcI CTRYAG 1 cut(s) 760
Sfr274I CTCGAG 1 cut(s) 708
SfuI TTCGAA 1 cut(s) 585
SgrDI CGTCGACG 1 cut(s) 1037
SlaI CTCGAG 1 cut(s) 708
SmiMI CAYNNNNRTG 3 cut(s) 132, 509, 825
SmlI CTYRAG 2 cut(s) 708, 1127
SmoI CTYRAG 2 cut(s) 708, 1127
Sse9I AATT 7 cut(s) 208, 224, 524, 635, 687, 1067, 1085
SsiI CCGC 2 cut(s) 695, 941
SspMI CTAG 3 cut(s) 171, 434, 903
SstI GAGCTC 3 cut(s) 178, 478, 715
StyD4I CCNGG 8 cut(s) 300, 398, 444, 540, 599, 645, 697, 771
TaaI ACNGT 4 cut(s) 19, 465, 683, 958
TaiI ACGT 3 cut(s) 331, 396, 1013
TaqII GACCGA 1 cut(s) 207
TasI AATT 7 cut(s) 208, 224, 524, 635, 687, 1067, 1085
TfiI GAWTC 7 cut(s) 138, 582, 642, 845, 962, 1100, 1105
Tru1I TTAA 6 cut(s) 60, 690, 704, 744, 881, 1128
Tru9I TTAA 6 cut(s) 60, 690, 704, 744, 881, 1128
TseI GCWGC 1 cut(s) 1078
TspDTI ATGAA 3 cut(s) 203, 281, 1048
TspGWI ACGGA 4 cut(s) 153, 309, 705, 988
Tth111I GACNNNGTC 1 cut(s) 194
Vha464I CTTAAG 1 cut(s) 1127
XapI RAATTY 4 cut(s) 224, 524, 635, 1067
XceI RCATGY 3 cut(s) 370, 514, 830
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 708
XmiI GTMKAC 1 cut(s) 1038
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 3 cut(s) 171, 434, 903
ZraI GACGTC 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.