Domain of unknown function (DUF4408)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26130 AT5G56980 |
| fragaria_vesca | FvH4_1g07560 |
| malus_domestica | MD02G1080400.v1.1 MD15G1207800.v1.1 |
| prunus_persica | Prupe.7G209100_v2.0.a1 |
| pyrus_communis | pycom15g18410 |
| rosa_laevigata | RLG00000016403 |
| rosa_multiflora | Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00148090 |
| rosa_rugosa | Rorug02G0036200 Rorug02G0036300 |
| rosa_samantha | Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400 |
| rosa_wichuraiana | Rw2G006470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 92, 274 |
| AccII | CGCG | 1 cut(s) | 635 |
| AciI | CCGC | 1 cut(s) | 539 |
| AclWI | GGATC | 1 cut(s) | 422 |
| AcsI | RAATTY | 1 cut(s) | 448 |
| AcvI | CACGTG | 1 cut(s) | 271 |
| AfaI | GTAC | 1 cut(s) | 190 |
| AflIII | ACRYGT | 1 cut(s) | 268 |
| AgsI | TTSAA | 3 cut(s) | 223, 554, 722 |
| AjnI | CCWGG | 1 cut(s) | 291 |
| AluBI | AGCT | 7 cut(s) | 45, 157, 171, 181, 488, 641, 673 |
| AluI | AGCT | 7 cut(s) | 45, 157, 171, 181, 488, 641, 673 |
| Alw21I | GWGCWC | 2 cut(s) | 417, 490 |
| AlwI | GGATC | 1 cut(s) | 422 |
| Ama87I | CYCGRG | 2 cut(s) | 332, 436 |
| AoxI | GGCC | 2 cut(s) | 294, 584 |
| ApeKI | GCWGC | 3 cut(s) | 667, 670, 679 |
| ApoI | RAATTY | 1 cut(s) | 448 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 717 |
| AspLEI | GCGC | 1 cut(s) | 496 |
| AspS9I | GGNCC | 3 cut(s) | 120, 205, 216 |
| AsuC2I | CCSGG | 3 cut(s) | 209, 257, 298 |
| AsuII | TTCGAA | 1 cut(s) | 243 |
| AvaI | CYCGRG | 2 cut(s) | 332, 436 |
| AvaII | GGWCC | 3 cut(s) | 120, 205, 216 |
| BanI | GGYRCC | 2 cut(s) | 92, 274 |
| BanII | GRGCYC | 1 cut(s) | 490 |
| BauI | CACGAG | 2 cut(s) | 83, 503 |
| BbrPI | CACGTG | 1 cut(s) | 271 |
| Bbv12I | GWGCWC | 2 cut(s) | 417, 490 |
| BbvI | GCAGC | 3 cut(s) | 666, 679, 682 |
| BccI | CCATC | 4 cut(s) | 104, 153, 334, 507 |
| BceAI | ACGGC | 1 cut(s) | 344 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 37 |
| BciT130I | CCWGG | 1 cut(s) | 293 |
| BclI | TGATCA | 1 cut(s) | 39 |
| BcnI | CCSGG | 3 cut(s) | 209, 257, 298 |
| BfaI | CTAG | 1 cut(s) | 387 |
| BisI | GCNGC | 4 cut(s) | 539, 668, 671, 680 |
| BlsI | GCNGC | 4 cut(s) | 540, 669, 672, 681 |
| Bme1390I | CCNGG | 4 cut(s) | 209, 257, 293, 298 |
| Bme18I | GGWCC | 3 cut(s) | 120, 205, 216 |
| BmeT110I | CYCGRG | 2 cut(s) | 332, 436 |
| BmgT120I | GGNCC | 3 cut(s) | 120, 205, 216 |
| BmiI | GGNNCC | 5 cut(s) | 94, 121, 122, 261, 276 |
| BmrFI | CCNGG | 4 cut(s) | 209, 257, 293, 298 |
| Bpu10I | CCTNAGC | 1 cut(s) | 674 |
| Bpu14I | TTCGAA | 1 cut(s) | 243 |
| BpuMI | CCSGG | 3 cut(s) | 209, 257, 298 |
| BsaAI | YACGTR | 1 cut(s) | 271 |
| BsaJI | CCNNGG | 2 cut(s) | 437, 587 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 295, 325 |
| BseBI | CCWGG | 1 cut(s) | 293 |
| BseDI | CCNNGG | 2 cut(s) | 437, 587 |
| BseMII | CTCAG | 1 cut(s) | 688 |
| BseRI | GAGGAG | 3 cut(s) | 97, 153, 454 |
| BseXI | GCAGC | 3 cut(s) | 666, 679, 682 |
| BseYI | CCCAGC | 2 cut(s) | 10, 541 |
| Bsh1236I | CGCG | 1 cut(s) | 635 |
| BshFI | GGCC | 2 cut(s) | 296, 586 |
| BshNI | GGYRCC | 2 cut(s) | 92, 274 |
| BsiHKAI | GWGCWC | 2 cut(s) | 417, 490 |
| BsiHKCI | CYCGRG | 2 cut(s) | 332, 436 |
| BsiSI | CCGG | 4 cut(s) | 208, 257, 297, 491 |
| BsiWI | CGTACG | 1 cut(s) | 188 |
| BslFI | GGGAC | 2 cut(s) | 133, 587 |
| BsmFI | GGGAC | 2 cut(s) | 133, 587 |
| BsnI | GGCC | 2 cut(s) | 296, 586 |
| BsoBI | CYCGRG | 2 cut(s) | 332, 436 |
| Bsp119I | TTCGAA | 1 cut(s) | 243 |
| Bsp1286I | GDGCHC | 2 cut(s) | 417, 490 |
| Bsp143I | GATC | 5 cut(s) | 39, 87, 151, 362, 427 |
| BspACI | CCGC | 1 cut(s) | 539 |
| BspANI | GGCC | 2 cut(s) | 296, 586 |
| BspCNI | CTCAG | 1 cut(s) | 687 |
| BspFNI | CGCG | 1 cut(s) | 635 |
| BspHI | TCATGA | 1 cut(s) | 36 |
| BspLI | GGNNCC | 5 cut(s) | 94, 121, 122, 261, 276 |
| BspPI | GGATC | 1 cut(s) | 422 |
| BspT104I | TTCGAA | 1 cut(s) | 243 |
| BspT107I | GGYRCC | 2 cut(s) | 92, 274 |
| BssECI | CCNNGG | 2 cut(s) | 437, 587 |
| BssMI | GATC | 5 cut(s) | 39, 87, 151, 362, 427 |
| BssSI | CACGAG | 2 cut(s) | 83, 503 |
| Bst2BI | CACGAG | 2 cut(s) | 83, 503 |
| Bst2UI | CCWGG | 1 cut(s) | 293 |
| Bst6I | CTCTTC | 1 cut(s) | 77 |
| BstBAI | YACGTR | 1 cut(s) | 271 |
| BstBI | TTCGAA | 1 cut(s) | 243 |
| BstC8I | GCNNGC | 1 cut(s) | 173 |
| BstDEI | CTNAG | 1 cut(s) | 674 |
| BstFNI | CGCG | 1 cut(s) | 635 |
| BstHHI | GCGC | 1 cut(s) | 496 |
| BstKTI | GATC | 5 cut(s) | 42, 90, 154, 365, 430 |
| BstMBI | GATC | 5 cut(s) | 39, 87, 151, 362, 427 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 11, 676, 679, 685 |
| BstNI | CCWGG | 1 cut(s) | 293 |
| BstNSI | RCATGY | 1 cut(s) | 287 |
| BstSCI | CCNGG | 4 cut(s) | 207, 255, 291, 296 |
| BstUI | CGCG | 1 cut(s) | 635 |
| BstV1I | GCAGC | 3 cut(s) | 666, 679, 682 |
| BsuRI | GGCC | 2 cut(s) | 296, 586 |
| Cac8I | GCNNGC | 1 cut(s) | 173 |
| CciI | TCATGA | 1 cut(s) | 36 |
| CfoI | GCGC | 1 cut(s) | 496 |
| Cfr13I | GGNCC | 3 cut(s) | 120, 205, 216 |
| CseI | GACGC | 1 cut(s) | 641 |
| Csp6I | GTAC | 1 cut(s) | 189 |
| CviAII | CATG | 3 cut(s) | 37, 284, 425 |
| CviQI | GTAC | 1 cut(s) | 189 |
| DdeI | CTNAG | 1 cut(s) | 674 |
| DpnI | GATC | 5 cut(s) | 41, 89, 153, 364, 429 |
| DpnII | GATC | 5 cut(s) | 39, 87, 151, 362, 427 |
| Eam1104I | CTCTTC | 1 cut(s) | 77 |
| EarI | CTCTTC | 1 cut(s) | 77 |
| Ecl136II | GAGCTC | 1 cut(s) | 488 |
| Eco24I | GRGCYC | 1 cut(s) | 490 |
| Eco32I | GATATC | 1 cut(s) | 392 |
| Eco47I | GGWCC | 3 cut(s) | 120, 205, 216 |
| Eco53kI | GAGCTC | 1 cut(s) | 488 |
| Eco72I | CACGTG | 1 cut(s) | 271 |
| Eco88I | CYCGRG | 2 cut(s) | 332, 436 |
| EcoICRI | GAGCTC | 1 cut(s) | 488 |
| EcoO109I | RGGNCCY | 2 cut(s) | 120, 216 |
| EcoRII | CCWGG | 1 cut(s) | 291 |
| EcoRV | GATATC | 1 cut(s) | 392 |
| EcoT38I | GRGCYC | 1 cut(s) | 490 |
| FaeI | CATG | 3 cut(s) | 40, 287, 428 |
| FaiI | YATR | 3 cut(s) | 38, 285, 426 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 702 |
| FaqI | GGGAC | 2 cut(s) | 133, 587 |
| FatI | CATG | 3 cut(s) | 36, 283, 424 |
| FbaI | TGATCA | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 4 cut(s) | 539, 668, 671, 680 |
| FriOI | GRGCYC | 1 cut(s) | 490 |
| Fsp4HI | GCNGC | 4 cut(s) | 539, 668, 671, 680 |
| FspBI | CTAG | 1 cut(s) | 387 |
| GlaI | GCGC | 1 cut(s) | 495 |
| GluI | GCNGC | 4 cut(s) | 539, 668, 671, 680 |
| GsaI | CCCAGC | 2 cut(s) | 14, 545 |
| HaeIII | GGCC | 2 cut(s) | 296, 586 |
| HapII | CCGG | 4 cut(s) | 208, 257, 297, 491 |
| HgaI | GACGC | 1 cut(s) | 641 |
| HhaI | GCGC | 1 cut(s) | 496 |
| Hin1II | CATG | 3 cut(s) | 40, 287, 428 |
| Hin6I | GCGC | 1 cut(s) | 494 |
| HinP1I | GCGC | 1 cut(s) | 494 |
| HincII | GTYRAC | 3 cut(s) | 79, 303, 631 |
| HindII | GTYRAC | 3 cut(s) | 79, 303, 631 |
| HinfI | GANTC | 5 cut(s) | 310, 398, 407, 473, 692 |
| HpaI | GTTAAC | 1 cut(s) | 303 |
| HpaII | CCGG | 4 cut(s) | 208, 257, 297, 491 |
| Hpy166II | GTNNAC | 5 cut(s) | 51, 79, 289, 303, 631 |
| Hpy188I | TCNGA | 6 cut(s) | 309, 367, 412, 432, 462, 472 |
| Hpy188III | TCNNGA | 5 cut(s) | 37, 85, 149, 395, 503 |
| Hpy8I | GTNNAC | 5 cut(s) | 51, 79, 289, 303, 631 |
| Hpy99I | CGWCG | 5 cut(s) | 22, 25, 566, 569, 623 |
| HpyAV | CCTTC | 5 cut(s) | 204, 229, 548, 576, 617 |
| HpyCH4IV | ACGT | 3 cut(s) | 17, 270, 567 |
| HpyCH4V | TGCA | 1 cut(s) | 682 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 11, 676, 679, 685 |
| HpyF3I | CTNAG | 1 cut(s) | 674 |
| HpySE526I | ACGT | 3 cut(s) | 17, 270, 567 |
| Hsp92II | CATG | 3 cut(s) | 40, 287, 428 |
| HspAI | GCGC | 1 cut(s) | 494 |
| KflI | GGGWCCC | 1 cut(s) | 120 |
| Ksp22I | TGATCA | 1 cut(s) | 39 |
| KspAI | GTTAAC | 1 cut(s) | 303 |
| Kzo9I | GATC | 5 cut(s) | 39, 87, 151, 362, 427 |
| LmnI | GCTCC | 4 cut(s) | 441, 462, 485, 493 |
| Lsp1109I | GCAGC | 3 cut(s) | 666, 679, 682 |
| MaeI | CTAG | 1 cut(s) | 387 |
| MaeII | ACGT | 3 cut(s) | 17, 270, 567 |
| MaeIII | GTNAC | 1 cut(s) | 704 |
| MalI | GATC | 5 cut(s) | 41, 89, 153, 364, 429 |
| MboI | GATC | 5 cut(s) | 39, 87, 151, 362, 427 |
| MboII | GAAGA | 1 cut(s) | 64 |
| MhlI | GDGCHC | 2 cut(s) | 417, 490 |
| MluCI | AATT | 2 cut(s) | 238, 448 |
| MlyI | GAGTC | 5 cut(s) | 304, 392, 416, 482, 686 |
| MmeI | TCCRAC | 1 cut(s) | 450 |
| MnlI | CCTC | 8 cut(s) | 70, 80, 92, 118, 174, 325, 432, 582 |
| MroXI | GAANNNNTTC | 1 cut(s) | 717 |
| MseI | TTAA | 2 cut(s) | 302, 663 |
| MspA1I | CMGCKG | 2 cut(s) | 45, 541 |
| MspI | CCGG | 4 cut(s) | 208, 257, 297, 491 |
| MspR9I | CCNGG | 4 cut(s) | 209, 257, 293, 298 |
| MvaI | CCWGG | 1 cut(s) | 293 |
| MvnI | CGCG | 1 cut(s) | 635 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 11, 676, 679, 685 |
| NciI | CCSGG | 3 cut(s) | 209, 257, 298 |
| NdeII | GATC | 5 cut(s) | 39, 87, 151, 362, 427 |
| NlaIII | CATG | 3 cut(s) | 40, 287, 428 |
| NlaIV | GGNNCC | 5 cut(s) | 94, 121, 122, 261, 276 |
| NmeAIII | GCCGAG | 1 cut(s) | 612 |
| NspI | RCATGY | 1 cut(s) | 287 |
| NspV | TTCGAA | 1 cut(s) | 243 |
| PagI | TCATGA | 1 cut(s) | 36 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 81, 96, 573 |
| PdmI | GAANNNNTTC | 1 cut(s) | 717 |
| Pfl23II | CGTACG | 1 cut(s) | 188 |
| PflFI | GACNNNGTC | 1 cut(s) | 209 |
| PkrI | GCNGC | 4 cut(s) | 540, 669, 672, 681 |
| PleI | GAGTC | 5 cut(s) | 304, 392, 415, 481, 686 |
| PmaCI | CACGTG | 1 cut(s) | 271 |
| PmlI | CACGTG | 1 cut(s) | 271 |
| PpsI | GAGTC | 5 cut(s) | 304, 392, 415, 481, 686 |
| Ppu21I | YACGTR | 1 cut(s) | 271 |
| PpuMI | RGGWCCY | 2 cut(s) | 120, 216 |
| Psp124BI | GAGCTC | 1 cut(s) | 490 |
| Psp5II | RGGWCCY | 2 cut(s) | 120, 216 |
| Psp6I | CCWGG | 1 cut(s) | 291 |
| PspCI | CACGTG | 1 cut(s) | 271 |
| PspFI | CCCAGC | 2 cut(s) | 10, 541 |
| PspGI | CCWGG | 1 cut(s) | 291 |
| PspLI | CGTACG | 1 cut(s) | 188 |
| PspN4I | GGNNCC | 5 cut(s) | 94, 121, 122, 261, 276 |
| PspPI | GGNCC | 3 cut(s) | 120, 205, 216 |
| PspPPI | RGGWCCY | 2 cut(s) | 120, 216 |
| PsyI | GACNNNGTC | 1 cut(s) | 209 |
| PvuII | CAGCTG | 1 cut(s) | 45 |
| RsaI | GTAC | 1 cut(s) | 190 |
| RsaNI | GTAC | 1 cut(s) | 189 |
| SacI | GAGCTC | 1 cut(s) | 490 |
| SaqAI | TTAA | 2 cut(s) | 302, 663 |
| SatI | GCNGC | 4 cut(s) | 539, 668, 671, 680 |
| Sau3AI | GATC | 5 cut(s) | 39, 87, 151, 362, 427 |
| Sau96I | GGNCC | 3 cut(s) | 120, 205, 216 |
| SchI | GAGTC | 5 cut(s) | 304, 392, 416, 482, 686 |
| ScrFI | CCNGG | 4 cut(s) | 209, 257, 293, 298 |
| SduI | GDGCHC | 2 cut(s) | 417, 490 |
| SfuI | TTCGAA | 1 cut(s) | 243 |
| SinI | GGWCC | 3 cut(s) | 120, 205, 216 |
| Sse9I | AATT | 2 cut(s) | 238, 448 |
| SsiI | CCGC | 1 cut(s) | 539 |
| SspMI | CTAG | 1 cut(s) | 387 |
| SstI | GAGCTC | 1 cut(s) | 490 |
| StyD4I | CCNGG | 4 cut(s) | 207, 255, 291, 296 |
| TaiI | ACGT | 3 cut(s) | 20, 273, 570 |
| TaqI | TCGA | 4 cut(s) | 243, 338, 401, 476 |
| TasI | AATT | 2 cut(s) | 238, 448 |
| TauI | GCSGC | 1 cut(s) | 541 |
| Tru1I | TTAA | 2 cut(s) | 302, 663 |
| Tru9I | TTAA | 2 cut(s) | 302, 663 |
| TseI | GCWGC | 3 cut(s) | 667, 670, 679 |
| TspDTI | ATGAA | 1 cut(s) | 446 |
| TspGWI | ACGGA | 1 cut(s) | 176 |
| Tth111I | GACNNNGTC | 1 cut(s) | 209 |
| VpaK11BI | GGWCC | 3 cut(s) | 120, 205, 216 |
| XapI | RAATTY | 1 cut(s) | 448 |
| XceI | RCATGY | 1 cut(s) | 287 |
| XmnI | GAANNNNTTC | 1 cut(s) | 717 |
| XspI | CTAG | 1 cut(s) | 387 |