FvH4_1g07560

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011769
Physical Location & Seq
Forward (+)
4022164 .. 4024110
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07560.t1

Sequence Viewer

Length: 807 bp
ATGTCGGCTTACATGCTCAACTGGCTCACACCCAACTCCCTGATCTTCCTCTTCCTCAACCTCACCATCGGAACCATCGTCATCTGCCACCGCTTCCACAAAACGCCGAAGCATCAAGATCACCAACACCCTTCGCTCCTGCAACGGGTCAGGTCGTTCGACTTCTCCCACTACAACTTCCAACCCGATCCCCCGGAAAACCCAACTGGACTAGTCCGGACTCCTTCGTTCATGGAACGCCTCAGGTCCATCAACTTTTCCCAGTACAACTTCCAACAGCCCTACCCGGAACCCGACCACGTAACGGAGTATCCGGCGCCGGAAAACCAGACCGGAGTTGTCCGGACTCCCTCGCTCTTGGACAGGGTCAGGTCCTTCAACTACAGCTTCCAACAACCGGAACACGTAACGGAAGACACAACACCGGACCACCCTACCGGAATAGTCCGGACTCCATCTTTCTTGGCCCGGCTCAAGTCCATGGATTTCTCCTCCCTCTACAGATCCGACCAGGAAAGTAAAGATCTTCATATGGTCAACCGGAGCAAGTCGGACACGGGTCATGAAGAAAGCCGACCGGAAAAGGTGATAAAGAAGTCTAACAGCGAGAGAGGATTTGAAGAAAACGACGGGGGTGATGTGACTGGTGTCCGGCCGCGAAGGGTGGTGGAGAAAACGATGTCGTTTGGAGACGACGAAGAAGTTGACGCGAAAGCTGACGACTTCATCAACCGGTTCAAGCAGCAGCTCAAGTTGCAGAGGCTCGACTCGCTTTTGCGTTACAAAGAAATGCTCAAGAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

269

Amino Acids

31.33

Weight (kDa)

6.6

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 232 - 267 5.4e-18 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26130 AT5G56980
fragaria_vesca FvH4_1g07560
malus_domestica MD02G1080400.v1.1 MD15G1207800.v1.1
prunus_persica Prupe.7G209100_v2.0.a1
pyrus_communis pycom15g18410
rosa_laevigata RLG00000016403
rosa_multiflora Rmu_co8329807.1_g000001 Rmu_sc0004086.1_g000010 Rmu_sc0021911.1_g000006
rosa_roxburghii Rroxscaffold_2G00148090
rosa_rugosa Rorug02G0036200 Rorug02G0036300
rosa_samantha Rh2AG082500 Rh2BG083300 Rh2CG085300 Rh2DG081400
rosa_wichuraiana Rw2G006470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AccII CGCG 2 cut(s) 658, 710
AccIII TCCGGA 3 cut(s) 216, 342, 447
AciI CCGC 2 cut(s) 91, 656
AclWI GGATC 2 cut(s) 182, 498
AcoI YGGCCR 1 cut(s) 653
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 3 cut(s) 145, 304, 397
AflIII ACRYGT 1 cut(s) 403
AgeI ACCGGT 1 cut(s) 732
AgsI TTSAA 3 cut(s) 379, 620, 739
AhlI ACTAGT 1 cut(s) 211
AjnI CCWGG 1 cut(s) 510
AluBI AGCT 3 cut(s) 387, 716, 748
AluI AGCT 3 cut(s) 387, 716, 748
Alw26I GTCTC 2 cut(s) 684, 795
AlwI GGATC 2 cut(s) 182, 498
Aor13HI TCCGGA 3 cut(s) 216, 342, 447
AoxI GGCC 2 cut(s) 465, 653
ApeKI GCWGC 2 cut(s) 742, 745
AsiGI ACCGGT 1 cut(s) 732
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 4 cut(s) 246, 372, 427, 466
AsuC2I CCSGG 3 cut(s) 194, 287, 469
AsuHPI GGTGA 4 cut(s) 55, 113, 598, 647
AvaII GGWCC 3 cut(s) 246, 372, 427
AxyI CCTNAGG 1 cut(s) 242
BanI GGYRCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 754, 757
BccI CCATC 4 cut(s) 74, 83, 257, 463
BciT130I CCWGG 1 cut(s) 512
BciVI GTATCC 1 cut(s) 321
BcnI CCSGG 3 cut(s) 194, 287, 469
BcoDI GTCTC 2 cut(s) 684, 795
BcuI ACTAGT 1 cut(s) 211
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 2 cut(s) 382, 499
BfoI RGCGCY 1 cut(s) 320
BfuI GTATCC 1 cut(s) 321
BglII AGATCT 1 cut(s) 523
BisI GCNGC 3 cut(s) 656, 743, 746
BlsI GCNGC 3 cut(s) 657, 744, 747
Bme1390I CCNGG 4 cut(s) 194, 287, 469, 512
Bme18I GGWCC 3 cut(s) 246, 372, 427
BmgT120I GGNCC 4 cut(s) 246, 372, 427, 466
BmiI GGNNCC 3 cut(s) 73, 291, 318
BmrFI CCNGG 4 cut(s) 194, 287, 469, 512
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 256
BoxI GACNNNNGTC 2 cut(s) 558, 647
BpiI GAAGAC 1 cut(s) 420
BpuEI CTTGAG 3 cut(s) 458, 734, 779
BpuMI CCSGG 3 cut(s) 194, 287, 469
BsaAI YACGTR 2 cut(s) 301, 406
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 192, 480
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 304, 397
Bse118I RCCGGY 1 cut(s) 732
Bse1I ACTGG 4 cut(s) 26, 211, 262, 649
Bse21I CCTNAGG 1 cut(s) 242
BseAI TCCGGA 3 cut(s) 216, 342, 447
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 2 cut(s) 192, 480
BseLI CCNNNNNNNGG 3 cut(s) 145, 304, 397
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 4 cut(s) 26, 211, 262, 649
BseRI GAGGAG 1 cut(s) 481
BseX3I CGGCCG 1 cut(s) 653
BseXI GCAGC 2 cut(s) 754, 757
Bsh1236I CGCG 2 cut(s) 658, 710
Bsh1285I CGRYCG 2 cut(s) 578, 656
BshFI GGCC 2 cut(s) 467, 655
BshNI GGYRCC 1 cut(s) 316
BshTI ACCGGT 1 cut(s) 732
BsiEI CGRYCG 2 cut(s) 578, 656
BslI CCNNNNNNNGG 3 cut(s) 145, 304, 397
BsmAI GTCTC 2 cut(s) 684, 795
BsmBI CGTCTC 1 cut(s) 684
BsnI GGCC 2 cut(s) 467, 655
Bsp13I TCCGGA 3 cut(s) 216, 342, 447
Bsp143I GATC 5 cut(s) 42, 118, 187, 503, 523
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 2 cut(s) 91, 656
BspANI GGCC 2 cut(s) 467, 655
BspCNI CTCAG 1 cut(s) 255
BspEI TCCGGA 3 cut(s) 216, 342, 447
BspFNI CGCG 2 cut(s) 658, 710
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 3 cut(s) 73, 291, 318
BspPI GGATC 2 cut(s) 182, 498
BspT107I GGYRCC 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 732
BsrI ACTGG 4 cut(s) 26, 211, 262, 649
BssAI RCCGGY 1 cut(s) 732
BssECI CCNNGG 2 cut(s) 192, 480
BssMI GATC 5 cut(s) 42, 118, 187, 503, 523
BssNI GRCGYC 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 512
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 317
BstBAI YACGTR 2 cut(s) 301, 406
BstDEI CTNAG 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 480
BstFNI CGCG 2 cut(s) 658, 710
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 5 cut(s) 45, 121, 190, 506, 526
BstMAI GTCTC 2 cut(s) 684, 795
BstMBI GATC 5 cut(s) 42, 118, 187, 503, 523
BstMCI CGRYCG 2 cut(s) 578, 656
BstMWI GCNNNNNNNGC 3 cut(s) 22, 754, 769
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 16
BstPAI GACNNNNGTC 2 cut(s) 558, 647
BstSCI CCNGG 4 cut(s) 192, 285, 467, 510
BstSFI CTRYAG 2 cut(s) 382, 499
BstUI CGCG 2 cut(s) 658, 710
BstV1I GCAGC 2 cut(s) 754, 757
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 2 cut(s) 503, 523
BstYI RGATCY 2 cut(s) 503, 523
BstZI CGGCCG 1 cut(s) 653
Bsu36I CCTNAGG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 321
BsuRI GGCC 2 cut(s) 467, 655
BtgI CCRYGG 1 cut(s) 480
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 732
Cfr13I GGNCC 4 cut(s) 246, 372, 427, 466
CseI GACGC 1 cut(s) 716
Csp6I GTAC 1 cut(s) 265
CspAI ACCGGT 1 cut(s) 732
CviAII CATG 4 cut(s) 13, 232, 481, 563
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 242
DinI GGCGCC 1 cut(s) 318
DpnI GATC 5 cut(s) 44, 120, 189, 505, 525
DpnII GATC 5 cut(s) 42, 118, 187, 503, 523
EaeI YGGCCR 1 cut(s) 653
EagI CGGCCG 1 cut(s) 653
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 653
Eco130I CCWWGG 1 cut(s) 480
Eco47I GGWCC 3 cut(s) 246, 372, 427
Eco52I CGGCCG 1 cut(s) 653
Eco81I CCTNAGG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 480
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 684
FaeI CATG 4 cut(s) 16, 235, 484, 566
FaiI YATR 6 cut(s) 14, 233, 482, 531, 533, 564
FatI CATG 4 cut(s) 12, 231, 480, 562
FauNDI CATATG 1 cut(s) 531
Fnu4HI GCNGC 3 cut(s) 656, 743, 746
Fsp4HI GCNGC 3 cut(s) 656, 743, 746
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 318
GluI GCNGC 3 cut(s) 656, 743, 746
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 2 cut(s) 467, 655
HgaI GACGC 1 cut(s) 716
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 4 cut(s) 16, 235, 484, 566
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 2 cut(s) 538, 706
HindII GTYRAC 2 cut(s) 538, 706
HinfI GANTC 4 cut(s) 220, 346, 451, 767
HphI GGTGA 4 cut(s) 55, 113, 598, 647
Hpy166II GTNNAC 2 cut(s) 538, 706
Hpy188I TCNGA 3 cut(s) 71, 508, 553
Hpy188III TCNNGA 6 cut(s) 116, 217, 343, 448, 563, 796
Hpy8I GTNNAC 2 cut(s) 538, 706
Hpy99I CGWCG 2 cut(s) 632, 698
HpyAV CCTTC 4 cut(s) 141, 234, 385, 654
HpyCH4IV ACGT 2 cut(s) 300, 405
HpyCH4V TGCA 2 cut(s) 142, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 754, 769
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 300, 405
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 4 cut(s) 16, 235, 484, 566
HspAI GCGC 1 cut(s) 317
KasI GGCGCC 1 cut(s) 316
Kpn2I TCCGGA 3 cut(s) 216, 342, 447
Kzo9I GATC 5 cut(s) 42, 118, 187, 503, 523
LmnI GCTCC 2 cut(s) 141, 543
Lsp1109I GCAGC 2 cut(s) 754, 757
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 212
MaeII ACGT 2 cut(s) 300, 405
MaeIII GTNAC 4 cut(s) 301, 406, 640, 779
MalI GATC 5 cut(s) 44, 120, 189, 505, 525
MboI GATC 5 cut(s) 42, 118, 187, 503, 523
MboII GAAGA 7 cut(s) 37, 43, 425, 518, 578, 632, 710
MflI RGATCY 2 cut(s) 503, 523
Mly113I GGCGCC 1 cut(s) 317
MlyI GAGTC 4 cut(s) 214, 340, 445, 761
MmeI TCCRAC 5 cut(s) 205, 298, 415, 531, 531
MnlI CCTC 9 cut(s) 59, 65, 71, 251, 361, 502, 506, 605, 753
MroI TCCGGA 3 cut(s) 216, 342, 447
MspR9I CCNGG 4 cut(s) 194, 287, 469, 512
MvaI CCWGG 1 cut(s) 512
MvnI CGCG 2 cut(s) 658, 710
MwoI GCNNNNNNNGC 3 cut(s) 22, 754, 769
NarI GGCGCC 1 cut(s) 317
NciI CCSGG 3 cut(s) 194, 287, 469
NcoI CCATGG 1 cut(s) 480
NdeI CATATG 1 cut(s) 531
NdeII GATC 5 cut(s) 42, 118, 187, 503, 523
NlaIII CATG 4 cut(s) 16, 235, 484, 566
NlaIV GGNNCC 3 cut(s) 73, 291, 318
NmuCI GTSAC 1 cut(s) 640
NspI RCATGY 1 cut(s) 16
PagI TCATGA 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PflFI GACNNNGTC 1 cut(s) 365
PinAI ACCGGT 1 cut(s) 732
PkrI GCNGC 3 cut(s) 657, 744, 747
PleI GAGTC 4 cut(s) 214, 340, 445, 761
PluTI GGCGCC 1 cut(s) 320
PpsI GAGTC 4 cut(s) 214, 340, 445, 761
Ppu21I YACGTR 2 cut(s) 301, 406
PpuMI RGGWCCY 1 cut(s) 372
PshAI GACNNNNGTC 2 cut(s) 558, 647
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 3 cut(s) 73, 291, 318
PspPI GGNCC 4 cut(s) 246, 372, 427, 466
PspPPI RGGWCCY 1 cut(s) 372
PsuI RGATCY 2 cut(s) 503, 523
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SatI GCNGC 3 cut(s) 656, 743, 746
Sau3AI GATC 5 cut(s) 42, 118, 187, 503, 523
Sau96I GGNCC 4 cut(s) 246, 372, 427, 466
SchI GAGTC 4 cut(s) 214, 340, 445, 761
ScrFI CCNGG 4 cut(s) 194, 287, 469, 512
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 2 cut(s) 382, 499
SfoI GGCGCC 1 cut(s) 318
SinI GGWCC 3 cut(s) 246, 372, 427
SmlI CTYRAG 3 cut(s) 473, 749, 794
SmoI CTYRAG 3 cut(s) 473, 749, 794
SpeI ACTAGT 1 cut(s) 211
SsiI CCGC 2 cut(s) 91, 656
SspDI GGCGCC 1 cut(s) 316
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 4 cut(s) 192, 285, 467, 510
StyI CCWWGG 1 cut(s) 480
TaiI ACGT 2 cut(s) 303, 408
TaqI TCGA 2 cut(s) 159, 765
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 658
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 2 cut(s) 742, 745
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 4 cut(s) 220, 518, 579, 715
TspGWI ACGGA 2 cut(s) 320, 425
Tth111I GACNNNGTC 1 cut(s) 365
VpaK11BI GGWCC 3 cut(s) 246, 372, 427
XceI RCATGY 1 cut(s) 16
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.