Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

13854318 .. 13855865

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATTTTGAATTTGATGATCAAGAACGGTTTTGTGCGACTCCTAAGCTTCCTTTGTTCTCGATTCCATTTAACAGAGCATGTGACACTCCAGGGCTAGCGACGCCGCCTGTGAACATCGCTGGATCAGTACCTTTTCTATGGGAGGAAGCTCCGGGAAAACCTCGCGTCTCTGATGAGAACAAACCGCTGGCTTCCAAGCAGAACGAAAGAGAAGGAGGAGGAGGAGGAGTCGTGCGGTGCCTTGAGCTTCCGCCGAGGCTATTTTTTCCAGCCGATGATGAGCCATCTCCGACCACAGTTCTTGATGGGCCTTACGATGTACCTCGCCGGTCTTTATCAGTGATAAGGAGAAGCGAAAGAGCCTCTGAGGGTAGATTCGAGTTTTCACGTTCCACCAATAGCCGCTGCTGCGACGGTGGCGGCGGTACAACGGTGAAGATTAGTAGAGTTAGAAGAAAAGGAAGCCTCTTGAATCTCTCTCATTCCAAATCGCAATTCTTGGCAAGGGTTTACCAAGGATTTAAGCAAGTGATCCCATGGAGGCGGAGACAAGAGAATCTTCCACGGATGAGTTCTTCCAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

196

Amino Acids

21.88

Weight (kDa)

9.46

Isoelectric Point (pI)

74.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	1 cut(s)	168
AciI	CCGC	8 cut(s)	107, 188, 238, 254, 406, 423, 426, 547
AclWI	GGATC	2 cut(s)	133, 529
AcsI	RAATTY	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	3 cut(s)	132, 324, 430
AgsI	TTSAA	2 cut(s)	11, 475
AjnI	CCWGG	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	49, 152, 250
AluI	AGCT	3 cut(s)	49, 152, 250
Alw26I	GTCTC	2 cut(s)	175, 544
AlwI	GGATC	2 cut(s)	133, 529
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	2 cut(s)	408, 411
ApoI	RAATTY	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	311
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	448
AsuNHI	GCTAGC	1 cut(s)	97
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BanI	GGYRCC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	395, 398
BccI	CCATC	2 cut(s)	295, 302
BciT130I	CCWGG	1 cut(s)	93
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	175, 544
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	5 cut(s)	107, 406, 409, 412, 424
BlsI	GCNGC	5 cut(s)	108, 407, 410, 413, 425
Bme1390I	CCNGG	2 cut(s)	93, 156
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	93, 156
BmtI	GCTAGC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	5 cut(s)	92, 257, 517, 539, 566
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 219, 246, 249
Bse118I	RCCGGY	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	5 cut(s)	92, 257, 517, 539, 566
BseGI	GGATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	360
BseRI	GAGGAG	4 cut(s)	234, 237, 240, 243
BseXI	GCAGC	2 cut(s)	395, 398
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	155, 331
BsmAI	GTCTC	2 cut(s)	175, 544
BsmBI	CGTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	19, 125, 534
Bsp19I	CCATGG	1 cut(s)	539
BspACI	CCGC	8 cut(s)	107, 188, 238, 254, 406, 423, 426, 547
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	242
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	2 cut(s)	133, 529
BspT107I	GGYRCC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	5 cut(s)	92, 257, 517, 539, 566
BssMI	GATC	3 cut(s)	19, 125, 534
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	2 cut(s)	517, 539
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	4 cut(s)	30, 301, 419, 436
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	99, 192
BstDEI	CTNAG	2 cut(s)	45, 369
BstDSI	CCRYGG	2 cut(s)	539, 566
BstF5I	GGATG	1 cut(s)	576
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	3 cut(s)	22, 128, 537
BstMAI	GTCTC	2 cut(s)	175, 544
BstMBI	GATC	3 cut(s)	19, 125, 534
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 411, 420
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	91, 154
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	395, 398
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	2 cut(s)	539, 566
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	99, 192
Cfr10I	RCCGGY	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	2 cut(s)	112, 157
Csp6I	GTAC	3 cut(s)	131, 323, 429
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	2 cut(s)	81, 540
CviQI	GTAC	3 cut(s)	131, 323, 429
DdeI	CTNAG	2 cut(s)	45, 369
DpnI	GATC	3 cut(s)	21, 127, 536
DpnII	GATC	3 cut(s)	19, 125, 534
EciI	GGCGGA	2 cut(s)	243, 562
Eco130I	CCWWGG	2 cut(s)	517, 539
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	517, 539
ErhI	CCWWGG	2 cut(s)	517, 539
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	2 cut(s)	84, 543
FaiI	YATR	3 cut(s)	82, 142, 541
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FatI	CATG	2 cut(s)	80, 539
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	107, 406, 409, 412, 424
FokI	GGATG	1 cut(s)	583
Fsp4HI	GCNGC	5 cut(s)	107, 406, 409, 412, 424
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	5 cut(s)	107, 406, 409, 412, 424
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	2 cut(s)	155, 331
HgaI	GACGC	2 cut(s)	112, 157
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	84, 543
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	6 cut(s)	40, 64, 231, 378, 475, 559
HpaII	CCGG	2 cut(s)	155, 331
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	115, 514
Hpy188I	TCNGA	3 cut(s)	175, 294, 370
Hpy188III	TCNNGA	4 cut(s)	23, 61, 305, 472
Hpy8I	GTNNAC	2 cut(s)	115, 514
Hpy99I	CGWCG	2 cut(s)	106, 419
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	4 cut(s)	30, 301, 419, 436
HpyCH4IV	ACGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 411, 420
HpyF3I	CTNAG	2 cut(s)	45, 369
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	84, 543
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 125, 534
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	8 cut(s)	78, 105, 108, 123, 168, 176, 285, 344
Lsp1109I	GCAGC	2 cut(s)	395, 398
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	3 cut(s)	21, 127, 536
MboI	GATC	3 cut(s)	19, 125, 534
MboII	GAAGA	4 cut(s)	451, 468, 554, 570
MluCI	AATT	2 cut(s)	11, 497
MlyI	GAGTC	2 cut(s)	34, 240
MmeI	TCCRAC	1 cut(s)	317
MseI	TTAA	3 cut(s)	72, 525, 589
MspA1I	CMGCKG	2 cut(s)	190, 408
MspI	CCGG	2 cut(s)	155, 331
MspR9I	CCNGG	2 cut(s)	93, 156
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	103, 411, 420
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	539
NdeII	GATC	3 cut(s)	19, 125, 534
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	84, 543
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	64, 378, 475, 559
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	5 cut(s)	108, 407, 410, 413, 425
PleI	GAGTC	2 cut(s)	34, 239
PpsI	GAGTC	2 cut(s)	34, 239
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	311
RsaI	GTAC	3 cut(s)	132, 324, 430
RsaNI	GTAC	3 cut(s)	131, 323, 429
SaqAI	TTAA	3 cut(s)	72, 525, 589
SatI	GCNGC	5 cut(s)	107, 406, 409, 412, 424
Sau3AI	GATC	3 cut(s)	19, 125, 534
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	34, 240
ScrFI	CCNGG	2 cut(s)	93, 156
SetI	ASST	7 cut(s)	51, 136, 154, 166, 252, 328, 394
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	11, 497
SsiI	CCGC	8 cut(s)	107, 188, 238, 254, 406, 423, 426, 547
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	91, 154
StyI	CCWWGG	2 cut(s)	517, 539
TaaI	ACNGT	4 cut(s)	30, 301, 419, 436
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	62, 381
TasI	AATT	2 cut(s)	11, 497
TauI	GCSGC	3 cut(s)	109, 408, 426
TfiI	GAWTC	4 cut(s)	64, 378, 475, 559
Tru1I	TTAA	3 cut(s)	72, 525, 589
Tru9I	TTAA	3 cut(s)	72, 525, 589
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	408, 411
Tsp45I	GTSAC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	84
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.