Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Forward (+)

21505074 .. 21506620

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTTTTTGTTAATGATCATCAAGATCGGTTCTGTTCTTCTACACGTAAGCAGCTTCCTCTGTTTTCATATCCAATGAATAACATTGCATATGAAACTACTCCGGGATTAGCTACACCTCCGGTTAACATCGCTGGATCTGTTCCTTTTCTTTGGGAAGAAGCTCCGGGAAAGCCTCGTCGTGTTAAAAAACCGGCGAGGTTGAATCAGAAAGGTGTCGTGAGAAGTCTTGAGCTTCCTCCGAGGTTAGTTTTACCCGGAGAATCAACGACGGTGAATGAGCCTTCTCCGACTACTGTTCTTGATGGTCCTTACGATTTACGTCGTCGTTCACTGTCGCTTCCGAGATCAGCGGCTGTTATTAGGAAGTTGAGAGGAGTTCCGGCGCCGGCGCCGGAGAAAGAAGAGAGATTGGTTGGTGGGTCTAGTAGATGGGGAAGTTTTGGGAATTGTAAAGAGGTGTCTGAGGGTATTTTCGACTTTTCACGTTTTAGAGATGACGGTTATGATTGCCGGCGGGATTGGGCCGGTGGAGGAGGAGTTGGTAACTTCGCCGGAGACGCAAAAGTGAAACTTTATAGGATTATAAAGAAAGGAAGCTTTTTTAATCTCTCTCATACAACAAAGTCAGATTTTTGGTTAAAAATGCAGGCAAGGGTTTACGAAGGGTTTAAGCAAGTGATTCCATGGAAGCGTAAGCAAGAGAATCTGGAAAGAACAAACTCTTCCATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

245

Amino Acids

27.54

Weight (kDa)

9.97

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccB1I	GGYRCC	2 cut(s)	385, 391
AciI	CCGC	2 cut(s)	353, 517
AclWI	GGATC	1 cut(s)	145
AcyI	GRCGYC	2 cut(s)	386, 392
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	5 cut(s)	55, 113, 164, 235, 600
AluI	AGCT	5 cut(s)	55, 113, 164, 235, 600
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	388, 394
AspS9I	GGNCC	2 cut(s)	308, 525
AsuC2I	CCSGG	3 cut(s)	105, 168, 258
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	308
BanI	GGYRCC	2 cut(s)	385, 391
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	299, 426
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	3 cut(s)	105, 168, 258
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	2 cut(s)	389, 395
BisI	GCNGC	2 cut(s)	53, 354
BlsI	GCNGC	2 cut(s)	54, 355
Bme1390I	CCNGG	3 cut(s)	105, 168, 258
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	308, 525
BmiI	GGNNCC	2 cut(s)	387, 393
BmrFI	CCNGG	3 cut(s)	105, 168, 258
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	3 cut(s)	105, 168, 258
BsaAI	YACGTR	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	386, 392
BsaJI	CCNNGG	2 cut(s)	242, 686
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bse118I	RCCGGY	4 cut(s)	193, 388, 513, 527
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	242, 686
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	456
BseRI	GAGGAG	3 cut(s)	390, 549, 552
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	2 cut(s)	385, 391
BsmAI	GTCTC	1 cut(s)	552
BsmBI	CGTCTC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	16, 25, 137, 347
Bsp19I	CCATGG	1 cut(s)	686
BspACI	CCGC	2 cut(s)	353, 517
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	387, 393
BspPI	GGATC	1 cut(s)	145
BspT107I	GGYRCC	2 cut(s)	385, 391
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	4 cut(s)	193, 388, 513, 527
BssAI	RCCGGY	4 cut(s)	193, 388, 513, 527
BssECI	CCNNGG	2 cut(s)	242, 686
BssMI	GATC	4 cut(s)	16, 25, 137, 347
BssNI	GRCGYC	2 cut(s)	386, 392
BssT1I	CCWWGG	1 cut(s)	686
Bst4CI	ACNGT	4 cut(s)	274, 298, 336, 503
Bst6I	CTCTTC	2 cut(s)	399, 730
BstACI	GRCGYC	2 cut(s)	386, 392
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	390, 515, 651
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	1 cut(s)	686
BstH2I	RGCGCY	2 cut(s)	389, 395
BstHHI	GCGC	2 cut(s)	388, 394
BstKTI	GATC	4 cut(s)	19, 28, 140, 350
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	4 cut(s)	16, 25, 137, 347
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstSCI	CCNGG	3 cut(s)	103, 166, 256
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	527
BtgI	CCRYGG	1 cut(s)	686
BtgZI	GCGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	3 cut(s)	390, 515, 651
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	2 cut(s)	388, 394
Cfr10I	RCCGGY	4 cut(s)	193, 388, 513, 527
Cfr13I	GGNCC	2 cut(s)	308, 525
CseI	GACGC	1 cut(s)	569
CviAII	CATG	1 cut(s)	687
CviJI	RGCY	9 cut(s)	55, 113, 164, 175, 235, 283, 356, 527, 600
CviKI_1	RGCY	9 cut(s)	55, 113, 164, 175, 235, 283, 356, 527, 600
DdeI	CTNAG	1 cut(s)	465
DinI	GGCGCC	2 cut(s)	387, 393
DpnI	GATC	4 cut(s)	18, 27, 139, 349
DpnII	GATC	4 cut(s)	16, 25, 137, 347
Eam1104I	CTCTTC	2 cut(s)	399, 730
EarI	CTCTTC	2 cut(s)	399, 730
Eco130I	CCWWGG	1 cut(s)	686
Eco47I	GGWCC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	686
EgeI	GGCGCC	2 cut(s)	387, 393
EheI	GGCGCC	2 cut(s)	387, 393
ErhI	CCWWGG	1 cut(s)	686
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	1 cut(s)	690
FaiI	YATR	8 cut(s)	70, 91, 93, 507, 579, 587, 618, 688
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FatI	CATG	1 cut(s)	686
FauI	CCCGC	1 cut(s)	510
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	53, 354
Fsp4HI	GCNGC	2 cut(s)	53, 354
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	2 cut(s)	387, 393
GluI	GCNGC	2 cut(s)	53, 354
HaeII	RGCGCY	2 cut(s)	389, 395
HaeIII	GGCC	1 cut(s)	527
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	2 cut(s)	388, 394
Hin1I	GRCGYC	2 cut(s)	386, 392
Hin1II	CATG	1 cut(s)	690
Hin6I	GCGC	2 cut(s)	386, 392
HinP1I	GCGC	2 cut(s)	386, 392
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	4 cut(s)	205, 263, 682, 706
HpaI	GTTAAC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	3 cut(s)	127, 332, 661
Hpy188I	TCNGA	6 cut(s)	210, 243, 291, 345, 466, 631
Hpy188III	TCNNGA	5 cut(s)	23, 220, 230, 302, 710
Hpy8I	GTNNAC	3 cut(s)	127, 332, 661
Hpy99I	CGWCG	4 cut(s)	183, 274, 327, 330
HpyAV	CCTTC	2 cut(s)	294, 659
HpyCH4III	ACNGT	4 cut(s)	274, 298, 336, 503
HpyCH4IV	ACGT	3 cut(s)	46, 322, 487
HpyCH4V	TGCA	2 cut(s)	89, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	3 cut(s)	46, 322, 487
Hsp92I	GRCGYC	2 cut(s)	386, 392
Hsp92II	CATG	1 cut(s)	690
HspAI	GCGC	2 cut(s)	386, 392
KasI	GGCGCC	2 cut(s)	385, 391
KroI	GCCGGC	2 cut(s)	388, 513
KroNI	GCCGGC	2 cut(s)	390, 515
Ksp22I	TGATCA	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	16, 25, 137, 347
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	3 cut(s)	46, 322, 487
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	4 cut(s)	18, 27, 139, 349
MboI	GATC	4 cut(s)	16, 25, 137, 347
MboII	GAAGA	4 cut(s)	30, 170, 416, 717
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	1 cut(s)	448
Mly113I	GGCGCC	2 cut(s)	386, 392
MmeI	TCCRAC	1 cut(s)	314
MreI	CGCCGGCG	1 cut(s)	388
MroNI	GCCGGC	2 cut(s)	388, 513
MseI	TTAA	7 cut(s)	12, 126, 186, 606, 641, 672, 736
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	3 cut(s)	105, 168, 258
MwoI	GCNNNNNNNGC	1 cut(s)	560
NaeI	GCCGGC	2 cut(s)	390, 515
NarI	GGCGCC	2 cut(s)	386, 392
NciI	CCSGG	3 cut(s)	105, 168, 258
NcoI	CCATGG	1 cut(s)	686
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	4 cut(s)	16, 25, 137, 347
NgoMIV	GCCGGC	2 cut(s)	388, 513
NlaIII	CATG	1 cut(s)	690
NlaIV	GGNNCC	2 cut(s)	387, 393
PdiI	GCCGGC	2 cut(s)	390, 515
PfeI	GAWTC	4 cut(s)	205, 263, 682, 706
PfoI	TCCNGGA	2 cut(s)	103, 166
PkrI	GCNGC	2 cut(s)	54, 355
PluTI	GGCGCC	2 cut(s)	389, 395
Ppu21I	YACGTR	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	587
PspN4I	GGNNCC	2 cut(s)	387, 393
PspPI	GGNCC	2 cut(s)	308, 525
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	137
SaqAI	TTAA	7 cut(s)	12, 126, 186, 606, 641, 672, 736
SatI	GCNGC	2 cut(s)	53, 354
Sau3AI	GATC	4 cut(s)	16, 25, 137, 347
Sau96I	GGNCC	2 cut(s)	308, 525
ScrFI	CCNGG	3 cut(s)	105, 168, 258
SfoI	GGCGCC	2 cut(s)	387, 393
SgrAI	CRCCGGYG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	2 cut(s)	353, 517
SspDI	GGCGCC	2 cut(s)	385, 391
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	3 cut(s)	103, 166, 256
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	4 cut(s)	274, 298, 336, 503
TaiI	ACGT	3 cut(s)	49, 325, 490
TaqI	TCGA	1 cut(s)	477
TasI	AATT	1 cut(s)	448
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	4 cut(s)	205, 263, 682, 706
Tru1I	TTAA	7 cut(s)	12, 126, 186, 606, 641, 672, 736
Tru9I	TTAA	7 cut(s)	12, 126, 186, 606, 641, 672, 736
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	57, 92, 108
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	308
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.