Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

29291175 .. 29292866

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G309000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGGTCTGAACCAGTCAAGGAAGCATGCGTCTGCGCCACACCAAAGCTGTCTTTGTTCTCACTTCCGAACCAGCCACCCGAGCCTCCGGGGATGCTTACCCCACCACTCCAAACTTCAGTCTCTGTTCCCTTCCAGTGGGAGGAAGCACCAGGGAAGCCTAGGCACTGCTCCACCACAGAATCCAAGGCCAAGTGTGCAAGATCCTTGGAACTGCCTCCGAGGTTGCTCAATGAGGCCGCCAAAACTACCAACATGCCCTCCCCAACCACCGTGCTGGAAGGGCCTGACGTCGGCCGGACTCTGTCTTTTTCGTTTAGAGTTAGGAGCCCCGATAGTTTGGGGAGCAAGCGGATCGGCAAGGAGAGTGGTAGAGGTGGTGGTTTTGGTTCTATGAAGTGGGGGAGTTTCAGGAAGAACAAGGAGGTTGTTGACCATGGCGGCTTTGACTTTTTGCCTCCGGCTGGTGGCAGCGGCAGGGGCGGCGCTGGTGAAACAAAGGTGAAGATCACAAGAGTTAGGAGGAGAGCTAGCTTCATGAGTGTTACTCACACAAAGTCACATACGTGGGCAAGCATTTATGAAAGCTTTAAGCAGGTGGTCCCATGGAGACGCAGGCAAGAAAAATTGAGAAAAATGGCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

216

Amino Acids

23.51

Weight (kDa)

10.29

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
AatII	GACGTC	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	586
AciI	CCGC	5 cut(s)	240, 352, 441, 474, 483
AclWI	GGATC	2 cut(s)	198, 362
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	291
AfiI	CCNNNNNNNGG	5 cut(s)	138, 142, 293, 464, 467
AjnI	CCWGG	1 cut(s)	151
AleI	CACNNNNGTG	1 cut(s)	565
AluBI	AGCT	4 cut(s)	49, 530, 534, 588
AluI	AGCT	4 cut(s)	49, 530, 534, 588
Alw26I	GTCTC	2 cut(s)	127, 604
AlwI	GGATC	2 cut(s)	198, 362
AlwNI	CAGNNNCTG	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	4 cut(s)	189, 237, 284, 295
ApeKI	GCWGC	1 cut(s)	471
AspA2I	CCTAGG	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	38, 488
AspS9I	GGNCC	2 cut(s)	284, 601
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	503, 514
AsuNHI	GCTAGC	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	601
AvrII	CCTAGG	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	483
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	127, 604
BfaI	CTAG	2 cut(s)	162, 531
BfoI	RGCGCY	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	5 cut(s)	240, 442, 472, 475, 484
BlnI	CCTAGG	1 cut(s)	161
BlsI	GCNGC	5 cut(s)	241, 443, 473, 476, 485
Bme1390I	CCNGG	2 cut(s)	90, 153
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	284, 601
BmiI	GGNNCC	2 cut(s)	329, 603
BmrFI	CCNGG	2 cut(s)	90, 153
BmsI	GCATC	1 cut(s)	84
BmtI	GCTAGC	1 cut(s)	534
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
BpuMI	CCSGG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	8 cut(s)	89, 152, 161, 186, 207, 221, 436, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 142, 293, 464, 467
Bse1I	ACTGG	2 cut(s)	14, 136
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	8 cut(s)	89, 152, 161, 186, 207, 221, 436, 605
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	5 cut(s)	138, 142, 293, 464, 467
BseNI	ACTGG	2 cut(s)	14, 136
BseRI	GAGGAG	1 cut(s)	538
BseX3I	CGGCCG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	191, 239, 286, 297
BsiEI	CGRYCG	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	89, 298, 461
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	5 cut(s)	138, 142, 293, 464, 467
BsmAI	GTCTC	2 cut(s)	127, 604
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	4 cut(s)	191, 239, 286, 297
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	203, 354, 507
Bsp19I	CCATGG	2 cut(s)	436, 605
BspACI	CCGC	5 cut(s)	240, 352, 441, 474, 483
BspANI	GGCC	4 cut(s)	191, 239, 286, 297
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	329, 603
BspMI	ACCTGC	1 cut(s)	586
BspOI	GCTAGC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	198, 362
BsrI	ACTGG	2 cut(s)	14, 136
BssECI	CCNNGG	8 cut(s)	89, 152, 161, 186, 207, 221, 436, 605
BssMI	GATC	3 cut(s)	203, 354, 507
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	5 cut(s)	161, 186, 207, 436, 605
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	5 cut(s)	28, 350, 532, 574, 617
BstDSI	CCRYGG	2 cut(s)	436, 605
BstF5I	GGATG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	2 cut(s)	38, 488
BstKTI	GATC	3 cut(s)	206, 357, 510
BstMAI	GTCTC	2 cut(s)	127, 604
BstMBI	GATC	3 cut(s)	203, 354, 507
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 197, 283, 480, 483
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	2 cut(s)	30, 259
BstSCI	CCNGG	2 cut(s)	88, 151
BstV1I	GCAGC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	203
BstZI	CGGCCG	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	191, 239, 286, 297
BtgI	CCRYGG	2 cut(s)	436, 605
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	143, 166
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	5 cut(s)	28, 350, 532, 574, 617
CaiI	CAGNNNCTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	2 cut(s)	38, 488
Cfr13I	GGNCC	2 cut(s)	284, 601
CseI	GACGC	2 cut(s)	19, 621
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	5 cut(s)	27, 256, 437, 538, 606
DpnI	GATC	3 cut(s)	205, 356, 509
DpnII	GATC	3 cut(s)	203, 354, 507
EaeI	YGGCCR	1 cut(s)	295
EagI	CGGCCG	1 cut(s)	295
EclXI	CGGCCG	1 cut(s)	295
Eco130I	CCWWGG	5 cut(s)	161, 186, 207, 436, 605
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	601
Eco52I	CGGCCG	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	5 cut(s)	161, 186, 207, 436, 605
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	5 cut(s)	161, 186, 207, 436, 605
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	5 cut(s)	30, 259, 440, 541, 609
FaiI	YATR	8 cut(s)	28, 257, 395, 438, 539, 564, 582, 607
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	5 cut(s)	26, 255, 436, 537, 605
Fnu4HI	GCNGC	5 cut(s)	240, 442, 472, 475, 484
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	5 cut(s)	240, 442, 472, 475, 484
FspBI	CTAG	2 cut(s)	162, 531
GlaI	GCGC	2 cut(s)	37, 487
GluI	GCNGC	5 cut(s)	240, 442, 472, 475, 484
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	4 cut(s)	191, 239, 286, 297
HapII	CCGG	3 cut(s)	89, 298, 461
HgaI	GACGC	2 cut(s)	19, 621
HhaI	GCGC	2 cut(s)	38, 488
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	5 cut(s)	30, 259, 440, 541, 609
Hin6I	GCGC	2 cut(s)	36, 486
HinP1I	GCGC	2 cut(s)	36, 486
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	2 cut(s)	182, 301
HpaII	CCGG	3 cut(s)	89, 298, 461
HphI	GGTGA	2 cut(s)	503, 514
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	10, 69, 222
Hpy188III	TCNNGA	2 cut(s)	412, 538
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	142, 275
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	291, 566
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 197, 283, 480, 483
HpySE526I	ACGT	2 cut(s)	291, 566
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	5 cut(s)	30, 259, 440, 541, 609
HspAI	GCGC	2 cut(s)	36, 486
Kzo9I	GATC	3 cut(s)	203, 354, 507
LmnI	GCTCC	3 cut(s)	176, 327, 345
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	2 cut(s)	162, 531
MaeII	ACGT	2 cut(s)	291, 566
MaeIII	GTNAC	2 cut(s)	544, 558
MalI	GATC	3 cut(s)	205, 356, 509
MboI	GATC	3 cut(s)	203, 354, 507
MboII	GAAGA	2 cut(s)	427, 517
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	1 cut(s)	626
MlyI	GAGTC	1 cut(s)	295
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	565
MspA1I	CMGCKG	1 cut(s)	474
MspI	CCGG	3 cut(s)	89, 298, 461
MspR9I	CCNGG	2 cut(s)	90, 153
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	5 cut(s)	82, 197, 283, 480, 483
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	2 cut(s)	436, 605
NdeII	GATC	3 cut(s)	203, 354, 507
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	5 cut(s)	30, 259, 440, 541, 609
NlaIV	GGNNCC	2 cut(s)	329, 603
NmuCI	GTSAC	1 cut(s)	558
NspI	RCATGY	2 cut(s)	30, 259
OliI	CACNNNNGTG	1 cut(s)	565
PaeI	GCATGC	1 cut(s)	30
PagI	TCATGA	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	182
PflFI	GACNNNGTC	1 cut(s)	304
PkrI	GCNGC	5 cut(s)	241, 443, 473, 476, 485
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	329, 603
PspPI	GGNCC	2 cut(s)	284, 601
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	5 cut(s)	240, 442, 472, 475, 484
Sau3AI	GATC	3 cut(s)	203, 354, 507
Sau96I	GGNCC	2 cut(s)	284, 601
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	90, 153
SduI	GDGCHC	1 cut(s)	332
SfaNI	GCATC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	565
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	1 cut(s)	626
SsiI	CCGC	5 cut(s)	240, 352, 441, 474, 483
SspMI	CTAG	2 cut(s)	162, 531
StyD4I	CCNGG	2 cut(s)	88, 151
StyI	CCWWGG	5 cut(s)	161, 186, 207, 436, 605
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	294, 569
TasI	AATT	1 cut(s)	626
TauI	GCSGC	4 cut(s)	242, 444, 477, 486
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	2 cut(s)	143, 173
TseFI	GTSAC	1 cut(s)	558
TseI	GCWGC	1 cut(s)	471
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	3 cut(s)	410, 526, 597
TspRI	CASTG	2 cut(s)	143, 173
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	601
XceI	RCATGY	2 cut(s)	30, 259
XmaJI	CCTAGG	1 cut(s)	161
XspI	CTAG	2 cut(s)	162, 531
ZraI	GACGTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.