Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

26146505 .. 26147074

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGTCGGAACCAAGTAGAACACCGAAGCTGTCTTTGTTCTCGCTTCCTTCCCAGCCGCCGGAGCCGCAGGGGATGTTAACACCGCCGCTCCAAACAACCGCCTCGGTTCCATTCAAGTGGGAGGAAGTTCCAGGAAAGCCCAGGGACTGCGGCGGCAGCGCAGAATCCAAACCCAAGTGCGCGAGATCCTTGGAGTTGCCTCCGAGGTTGCAGAGCGAGGCGGCCAAAATTACCAACATGCCCTCCCCGACCACCGTGTTGGACGGGCCTGACGTCGGGCGGACTATGTCGTTTTCGTTCAGAGATAGGAGCCCTGGTGCTCTTGGGAGTAAGAGGTTGAGCAAGGAGAGTTGTAGGAGCGGCAGCGGTGGCGGTGGCGGTTTTGGGTCTATGAGGTGGGCAAGTTTCAGGAAGAACAAAGAGGTTGTTGACCACGGCGGCTTTGACTTTTTGCCTCCGGCTAGTGGCGGCGGTGAAACGAAGGTGAAGATCACAAGAGTTAGGAGGACAGCTAGCTTCTTGAATTCTTCCAACACAAGGTCACGTATGTGGGTAAGTACGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

190

Amino Acids

20.33

Weight (kDa)

10.42

Isoelectric Point (pI)

69.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccBSI	CCGCTC	2 cut(s)	91, 363
AccII	CGCG	1 cut(s)	185
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	526
AcyI	GRCGYC	2 cut(s)	5, 276
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	4 cut(s)	61, 278, 467, 540
AgsI	TTSAA	2 cut(s)	118, 526
AjnI	CCWGG	3 cut(s)	133, 143, 316
AleI	CACNNNNGTG	1 cut(s)	550
AluBI	AGCT	3 cut(s)	31, 515, 519
AluI	AGCT	3 cut(s)	31, 515, 519
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	183
AlwNI	CAGNNNCTG	1 cut(s)	150
AoxI	GGCC	2 cut(s)	225, 269
ApeKI	GCWGC	2 cut(s)	159, 366
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	2 cut(s)	164, 185
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	488, 499
AsuNHI	GCTAGC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	171, 378
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	3 cut(s)	135, 145, 318
BfaI	CTAG	2 cut(s)	465, 516
Bme1390I	CCNGG	3 cut(s)	135, 145, 318
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	4 cut(s)	12, 66, 111, 314
BmrFI	CCNGG	3 cut(s)	135, 145, 318
BmtI	GCTAGC	1 cut(s)	519
BsaAI	YACGTR	1 cut(s)	548
BsaHI	GRCGYC	2 cut(s)	5, 276
BsaJI	CCNNGG	7 cut(s)	105, 143, 144, 192, 206, 316, 436
BsaXI	ACNNNNNCTCC	6 cut(s)	75, 105, 230, 260, 304, 334
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 278, 467, 540
BseBI	CCWGG	3 cut(s)	135, 145, 318
BseDI	CCNNGG	7 cut(s)	105, 143, 144, 192, 206, 316, 436
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	4 cut(s)	61, 278, 467, 540
BseXI	GCAGC	2 cut(s)	171, 378
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	227, 271
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	62, 461
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	4 cut(s)	61, 278, 467, 540
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	227, 271
Bsp1286I	GDGCHC	2 cut(s)	317, 325
Bsp143I	GATC	2 cut(s)	188, 492
BspANI	GGCC	2 cut(s)	227, 271
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	4 cut(s)	12, 66, 111, 314
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	183
BsrBI	CCGCTC	2 cut(s)	91, 363
BssECI	CCNNGG	7 cut(s)	105, 143, 144, 192, 206, 316, 436
BssMI	GATC	2 cut(s)	188, 492
BssNI	GRCGYC	2 cut(s)	5, 276
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	135, 145, 318
Bst4CI	ACNGT	1 cut(s)	259
BstACI	GRCGYC	2 cut(s)	5, 276
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	517
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	164, 185
BstKTI	GATC	2 cut(s)	191, 495
BstMBI	GATC	2 cut(s)	188, 492
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 67, 159, 372
BstNI	CCWGG	3 cut(s)	135, 145, 318
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	3 cut(s)	133, 143, 316
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	171, 378
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	2 cut(s)	120, 262
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	227, 271
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	517
CaiI	CAGNNNCTG	1 cut(s)	150
CfoI	GCGC	2 cut(s)	164, 185
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	1 cut(s)	241
CviQI	GTAC	1 cut(s)	561
DpnI	GATC	2 cut(s)	190, 494
DpnII	GATC	2 cut(s)	188, 492
EaeI	YGGCCR	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	133, 143, 316
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	244
FaiI	YATR	4 cut(s)	242, 290, 395, 551
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	240
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	317
FspBI	CTAG	2 cut(s)	465, 516
GlaI	GCGC	2 cut(s)	163, 184
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	227, 271
HapII	CCGG	2 cut(s)	62, 461
HhaI	GCGC	2 cut(s)	164, 185
Hin1I	GRCGYC	2 cut(s)	5, 276
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	2 cut(s)	162, 183
HinP1I	GCGC	2 cut(s)	162, 183
HincII	GTYRAC	2 cut(s)	81, 433
HindII	GTYRAC	2 cut(s)	81, 433
HinfI	GANTC	1 cut(s)	167
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	2 cut(s)	62, 461
HphI	GGTGA	2 cut(s)	488, 499
Hpy166II	GTNNAC	2 cut(s)	81, 433
Hpy188I	TCNGA	3 cut(s)	10, 207, 305
Hpy188III	TCNNGA	2 cut(s)	412, 523
Hpy8I	GTNNAC	2 cut(s)	81, 433
Hpy99I	CGWCG	2 cut(s)	10, 281
HpyAV	CCTTC	2 cut(s)	60, 478
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	276, 547
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 67, 159, 372
HpySE526I	ACGT	2 cut(s)	276, 547
Hsp92I	GRCGYC	2 cut(s)	5, 276
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	2 cut(s)	162, 183
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	188, 492
LmnI	GCTCC	4 cut(s)	64, 96, 312, 360
Lsp1109I	GCAGC	2 cut(s)	171, 378
MaeI	CTAG	2 cut(s)	465, 516
MaeII	ACGT	2 cut(s)	276, 547
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	2 cut(s)	190, 494
MbiI	CCGCTC	2 cut(s)	91, 363
MboI	GATC	2 cut(s)	188, 492
MboII	GAAGA	3 cut(s)	427, 502, 522
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	317, 325
MluCI	AATT	2 cut(s)	231, 526
MmeI	TCCRAC	2 cut(s)	243, 558
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	2 cut(s)	118, 550
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	2 cut(s)	62, 461
MspR9I	CCNGG	3 cut(s)	135, 145, 318
MvaI	CCWGG	3 cut(s)	135, 145, 318
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	64, 67, 159, 372
NdeII	GATC	2 cut(s)	188, 492
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	4 cut(s)	12, 66, 111, 314
NmuCI	GTSAC	1 cut(s)	543
NspI	RCATGY	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	550
PasI	CCCWGGG	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	548
Psp6I	CCWGG	3 cut(s)	133, 143, 316
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	3 cut(s)	133, 143, 316
PspN4I	GGNNCC	4 cut(s)	12, 66, 111, 314
PspPI	GGNCC	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	289
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	2 cut(s)	118, 550
SaqAI	TTAA	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	188, 492
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	3 cut(s)	135, 145, 318
SduI	GDGCHC	2 cut(s)	317, 325
SmiMI	CAYNNNNRTG	2 cut(s)	118, 550
Sse9I	AATT	2 cut(s)	231, 526
SspMI	CTAG	2 cut(s)	465, 516
StyD4I	CCNGG	3 cut(s)	133, 143, 316
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	279, 550
TasI	AATT	2 cut(s)	231, 526
TauI	GCSGC	9 cut(s)	61, 70, 91, 156, 159, 227, 366, 444, 474
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	2 cut(s)	159, 366
Tsp45I	GTSAC	1 cut(s)	543
Tth111I	GACNNNGTC	1 cut(s)	289
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	2 cut(s)	465, 516
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.