Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005371.1

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

39565 .. 40158

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005371.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggagaaggagtctgaggcagtgaacgaagcaagccccataaggaagctggctctgttctcacttccgagccagccacccgagcctccagggatgctgacgccgccgctgctgacttcagtctcggttcctttccagtgggaggaggcgccgggaaaaccccgacacttcggcggcggaggaacagagaccaaggccaagtgcgcgagatccttggagctgcctccgaggttgttggtgagtgaggctaaagttatcaacatgccttccccgacgactgtgctggatggacctgaggtgggccggactctgtcgttttcgtatgcattgaggagcccgagcaaggaggttaagggtggcggcggcggcggggggtttgggtctatgaggtgggccaggtttcggaagaacaaggaggccggtgagggcaatttcgacttttcgcctaccgacagcggcggtgatcggacaaaggtgaagatcacaagggttaggagtaaggctagcttcttcaatggtgctcatcactcaaggtcacacatgtgggtaagtgcctcccatcttaaattgaattttgttttgcataagatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

197

Amino Acids

21.35

Weight (kDa)

10.0

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	206
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	101, 149
AfiI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 402
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	2 cut(s)	514, 571
AjnI	CCWGG	2 cut(s)	88, 395
AleI	CACNNNNGTG	1 cut(s)	541
AluBI	AGCT	3 cut(s)	49, 220, 507
AluI	AGCT	3 cut(s)	49, 220, 507
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	2 cut(s)	127, 182
AlwI	GGATC	1 cut(s)	204
Ama87I	CYCGRG	2 cut(s)	80, 337
AoxI	GGCC	4 cut(s)	195, 301, 393, 417
ApeKI	GCWGC	2 cut(s)	109, 220
ApoI	RAATTY	1 cut(s)	571
AspLEI	GCGC	2 cut(s)	151, 206
AspS9I	GGNCC	3 cut(s)	290, 301, 393
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	250, 434, 473, 487
AsuNHI	GCTAGC	1 cut(s)	503
AvaI	CYCGRG	2 cut(s)	80, 337
AvaII	GGWCC	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	2 cut(s)	96, 207
BccI	CCATC	2 cut(s)	281, 567
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	2 cut(s)	90, 397
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	127, 182
BfaI	CTAG	2 cut(s)	504, 592
BfoI	RGCGCY	1 cut(s)	152
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 361, 364, 367, 457
BlsI	GCNGC	9 cut(s)	105, 108, 111, 176, 222, 362, 365, 368, 458
Bme1390I	CCNGG	3 cut(s)	90, 153, 397
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	2 cut(s)	80, 337
BmgT120I	GGNCC	3 cut(s)	290, 301, 393
BmiI	GGNNCC	3 cut(s)	129, 150, 335
BmrFI	CCNGG	3 cut(s)	90, 153, 397
BmsI	GCATC	1 cut(s)	84
BmtI	GCTAGC	1 cut(s)	507
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	101, 149
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	89, 192, 213, 227
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 402
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	90, 397
BseDI	CCNNGG	4 cut(s)	89, 192, 213, 227
BseGI	GGATG	2 cut(s)	99, 292
BseLI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 402
BseMII	CTCAG	2 cut(s)	6, 285
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	158, 346
BseXI	GCAGC	2 cut(s)	96, 207
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	4 cut(s)	197, 303, 395, 419
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	2 cut(s)	80, 337
BsiSI	CCGG	3 cut(s)	152, 304, 420
BslI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 402
BsmAI	GTCTC	2 cut(s)	127, 182
BsnI	GGCC	4 cut(s)	197, 303, 395, 419
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	2 cut(s)	80, 337
Bsp1286I	GDGCHC	2 cut(s)	338, 523
Bsp143I	GATC	4 cut(s)	209, 463, 480, 588
BspANI	GGCC	4 cut(s)	197, 303, 395, 419
BspCNI	CTCAG	2 cut(s)	7, 286
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	3 cut(s)	129, 150, 335
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	4 cut(s)	89, 192, 213, 227
BssMI	GATC	4 cut(s)	209, 463, 480, 588
BssNI	GRCGYC	2 cut(s)	101, 149
BssT1I	CCWWGG	2 cut(s)	192, 213
Bst2UI	CCWGG	2 cut(s)	90, 397
Bst4CI	ACNGT	1 cut(s)	280
BstACI	GRCGYC	2 cut(s)	101, 149
BstC8I	GCNNGC	4 cut(s)	34, 51, 74, 505
BstDEI	CTNAG	2 cut(s)	15, 294
BstF5I	GGATG	2 cut(s)	99, 292
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 206
BstKTI	GATC	4 cut(s)	212, 466, 483, 591
BstMAI	GTCTC	2 cut(s)	127, 182
BstMBI	GATC	4 cut(s)	209, 463, 480, 588
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 103, 109, 203, 366
BstNI	CCWGG	2 cut(s)	90, 397
BstNSI	RCATGY	2 cut(s)	265, 544
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	88, 151, 395
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	96, 207
BstX2I	RGATCY	2 cut(s)	209, 588
BstYI	RGATCY	2 cut(s)	209, 588
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	4 cut(s)	197, 303, 395, 419
BtsCI	GGATG	2 cut(s)	99, 292
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 143
Cac8I	GCNNGC	4 cut(s)	34, 51, 74, 505
CfoI	GCGC	2 cut(s)	151, 206
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	3 cut(s)	290, 301, 393
CseI	GACGC	1 cut(s)	109
CviAII	CATG	2 cut(s)	262, 541
DdeI	CTNAG	2 cut(s)	15, 294
DinI	GGCGCC	1 cut(s)	150
DpnI	GATC	4 cut(s)	211, 465, 482, 590
DpnII	GATC	4 cut(s)	209, 463, 480, 588
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	192, 213
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	80, 337
EcoRII	CCWGG	2 cut(s)	88, 395
EcoT14I	CCWWGG	2 cut(s)	192, 213
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	338
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	192, 213
FaeI	CATG	2 cut(s)	265, 544
FaiI	YATR	6 cut(s)	41, 263, 324, 386, 542, 585
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	2 cut(s)	261, 540
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 361, 364, 367, 457
FokI	GGATG	2 cut(s)	106, 299
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 361, 364, 367, 457
FspBI	CTAG	2 cut(s)	504, 592
GlaI	GCGC	2 cut(s)	150, 205
GluI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 361, 364, 367, 457
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	197, 303, 395, 419
HapII	CCGG	3 cut(s)	152, 304, 420
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	151, 206
Hin1I	GRCGYC	2 cut(s)	101, 149
Hin1II	CATG	2 cut(s)	265, 544
Hin6I	GCGC	2 cut(s)	149, 204
HinP1I	GCGC	2 cut(s)	149, 204
HinfI	GANTC	2 cut(s)	11, 307
HpaII	CCGG	3 cut(s)	152, 304, 420
HphI	GGTGA	4 cut(s)	250, 434, 473, 487
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	16, 69, 228, 405, 468
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	326, 583
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 103, 109, 203, 366
HpyF3I	CTNAG	2 cut(s)	15, 294
Hsp92I	GRCGYC	2 cut(s)	101, 149
Hsp92II	CATG	2 cut(s)	265, 544
HspAI	GCGC	2 cut(s)	149, 204
KasI	GGCGCC	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	209, 463, 480, 588
LmnI	GCTCC	2 cut(s)	217, 333
Lsp1109I	GCAGC	2 cut(s)	96, 207
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	2 cut(s)	504, 592
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	4 cut(s)	211, 465, 482, 590
MboI	GATC	4 cut(s)	209, 463, 480, 588
MboII	GAAGA	3 cut(s)	418, 490, 502
MflI	RGATCY	2 cut(s)	209, 588
MhlI	GDGCHC	2 cut(s)	338, 523
MluCI	AATT	3 cut(s)	430, 566, 571
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	20, 301
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	2 cut(s)	351, 564
MslI	CAYNNNNRTG	1 cut(s)	541
MspA1I	CMGCKG	2 cut(s)	109, 456
MspI	CCGG	3 cut(s)	152, 304, 420
MspR9I	CCNGG	3 cut(s)	90, 153, 397
MvaI	CCWGG	2 cut(s)	90, 397
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	82, 103, 109, 203, 366
NarI	GGCGCC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	4 cut(s)	209, 463, 480, 588
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	2 cut(s)	265, 544
NlaIV	GGNNCC	3 cut(s)	129, 150, 335
NmuCI	GTSAC	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	2 cut(s)	265, 544
OliI	CACNNNNGTG	1 cut(s)	541
PciI	ACATGT	1 cut(s)	540
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	9 cut(s)	105, 108, 111, 176, 222, 362, 365, 368, 458
PleI	GAGTC	2 cut(s)	19, 301
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	19, 301
PscI	ACATGT	1 cut(s)	540
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	88, 395
PspGI	CCWGG	2 cut(s)	88, 395
PspN4I	GGNNCC	3 cut(s)	129, 150, 335
PspPI	GGNCC	3 cut(s)	290, 301, 393
PsuI	RGATCY	2 cut(s)	209, 588
PsyI	GACNNNGTC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	2 cut(s)	351, 564
SatI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 361, 364, 367, 457
Sau3AI	GATC	4 cut(s)	209, 463, 480, 588
Sau96I	GGNCC	3 cut(s)	290, 301, 393
SchI	GAGTC	2 cut(s)	20, 301
ScrFI	CCNGG	3 cut(s)	90, 153, 397
SduI	GDGCHC	2 cut(s)	338, 523
SfaNI	GCATC	1 cut(s)	84
SfoI	GGCGCC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	3 cut(s)	430, 566, 571
SspDI	GGCGCC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	504, 592
StyD4I	CCNGG	3 cut(s)	88, 151, 395
StyI	CCWWGG	2 cut(s)	192, 213
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	435
TasI	AATT	3 cut(s)	430, 566, 571
TauI	GCSGC	7 cut(s)	106, 109, 177, 363, 366, 369, 459
Tru1I	TTAA	2 cut(s)	351, 564
Tru9I	TTAA	2 cut(s)	351, 564
TscAI	CASTG	2 cut(s)	27, 143
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	2 cut(s)	109, 220
Tsp45I	GTSAC	1 cut(s)	534
TspRI	CASTG	2 cut(s)	27, 143
Tth111I	GACNNNGTC	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	2 cut(s)	265, 544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	504, 592
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.