Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

67662645 .. 67664086

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG415100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAAAGAGTCTGAGGCAGTGAACGAAGCAAGCCCCATAAGGAAGCTGGCTCTGTTCTCACTTCCGAGCCAGCCACCCGAGCCTCCAGGGATGCTGACGCCGCCGCTGCTGACTTCAGTCTCGGTTCCTTTCCAGTGGGAGGAGGCGCCGGGAAAACCCCGACACTTCGGCGGCGGAGAAGGCGGCGGAGGAACAGAGACCAAGGCCAAGTGCGCGAGATCCTTGGAGCTGCCTCCGAGGTTGTTGCTGAGTGAGGCTAAAGTTATCAACATGCCTTCCCCGACGACTGTGCTGGATGGGCCTGAGGTGGGCCGGACTCTGTCGTTTTCGTATGCATTGAGGAGCCCGAGCAAGGAGGTTAAGGGTGGCGGCGGCGGCGGGGGGTTTGGGTCTATGAGGTGGGCCAGGTTTCGGAAGAACAAGGAGGCCGGTGAGGGCAATTTCGACTTTTCGCCTACCGACAGCGGCGGTGATCGGACAAAGGTGAAGATCACAAGGGTTAGGAGTAAGGCTAGCTTCTTCAATGGTGCTCATCACTCAAGGTCACACATGTGGGCCAGCATCTGTGAAAGCTTAAAGCAGGTGGTTCCATGGAGACGCAGACAGGAAAAACTGAGAAAATCTGCTACTGTTGGATATGAACCTCAAAATCCAATTCCCACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

223

Amino Acids

24.21

Weight (kDa)

9.91

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	101, 149
AfiI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 414
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	1 cut(s)	526
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	2 cut(s)	88, 407
AleI	CACNNNNGTG	1 cut(s)	553
AluBI	AGCT	4 cut(s)	49, 232, 519, 576
AluI	AGCT	4 cut(s)	49, 232, 519, 576
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	3 cut(s)	127, 194, 592
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	567
Ama87I	CYCGRG	2 cut(s)	80, 349
AoxI	GGCC	6 cut(s)	207, 302, 313, 405, 429, 558
ApeKI	GCWGC	2 cut(s)	109, 232
AspLEI	GCGC	2 cut(s)	151, 218
AspS9I	GGNCC	4 cut(s)	302, 313, 405, 558
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	3 cut(s)	446, 485, 499
AsuNHI	GCTAGC	1 cut(s)	515
AvaI	CYCGRG	2 cut(s)	80, 349
AxyI	CCTNAGG	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	96, 219
BccI	CCATC	1 cut(s)	293
BcgI	CGANNNNNNTGC	4 cut(s)	229, 263, 274, 308
BciT130I	CCWGG	2 cut(s)	90, 409
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	3 cut(s)	127, 194, 592
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	2 cut(s)	516, 666
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	574
Bme1390I	CCNGG	3 cut(s)	90, 153, 409
BmeT110I	CYCGRG	2 cut(s)	80, 349
BmgT120I	GGNCC	4 cut(s)	302, 313, 405, 558
BmiI	GGNNCC	4 cut(s)	129, 150, 347, 591
BmrFI	CCNGG	3 cut(s)	90, 153, 409
BmsI	GCATC	2 cut(s)	84, 573
BmtI	GCTAGC	1 cut(s)	519
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	101, 149
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	5 cut(s)	89, 204, 225, 239, 593
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 414
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	90, 409
BseDI	CCNNGG	5 cut(s)	89, 204, 225, 239, 593
BseGI	GGATG	2 cut(s)	99, 304
BseLI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 414
BseMII	CTCAG	4 cut(s)	6, 242, 297, 608
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	158, 358
BseXI	GCAGC	2 cut(s)	96, 219
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	6 cut(s)	209, 304, 315, 407, 431, 560
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	535
BsiHKCI	CYCGRG	2 cut(s)	80, 349
BsiSI	CCGG	3 cut(s)	152, 316, 432
BslI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 414
BsmAI	GTCTC	3 cut(s)	127, 194, 592
BsmBI	CGTCTC	1 cut(s)	592
BsnI	GGCC	6 cut(s)	209, 304, 315, 407, 431, 560
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	80, 349
Bsp1286I	GDGCHC	2 cut(s)	350, 535
Bsp143I	GATC	3 cut(s)	221, 475, 492
Bsp19I	CCATGG	1 cut(s)	593
BspANI	GGCC	6 cut(s)	209, 304, 315, 407, 431, 560
BspCNI	CTCAG	4 cut(s)	7, 243, 298, 609
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	4 cut(s)	129, 150, 347, 591
BspMI	ACCTGC	1 cut(s)	574
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	5 cut(s)	89, 204, 225, 239, 593
BssMI	GATC	3 cut(s)	221, 475, 492
BssNI	GRCGYC	2 cut(s)	101, 149
BssT1I	CCWWGG	3 cut(s)	204, 225, 593
Bst2UI	CCWGG	2 cut(s)	90, 409
Bst4CI	ACNGT	2 cut(s)	292, 634
BstACI	GRCGYC	2 cut(s)	101, 149
BstC8I	GCNNGC	5 cut(s)	34, 51, 74, 517, 562
BstDEI	CTNAG	4 cut(s)	15, 251, 306, 617
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	99, 304
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 218
BstKTI	GATC	3 cut(s)	224, 478, 495
BstMAI	GTCTC	3 cut(s)	127, 194, 592
BstMBI	GATC	3 cut(s)	221, 475, 492
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 183, 215, 301, 378
BstNI	CCWGG	2 cut(s)	90, 409
BstNSI	RCATGY	2 cut(s)	277, 556
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	88, 151, 407
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	96, 219
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	6 cut(s)	209, 304, 315, 407, 431, 560
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	2 cut(s)	99, 304
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 143
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	5 cut(s)	34, 51, 74, 517, 562
CaiI	CAGNNNCTG	1 cut(s)	567
CfoI	GCGC	2 cut(s)	151, 218
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	4 cut(s)	302, 313, 405, 558
CseI	GACGC	2 cut(s)	109, 609
CviAII	CATG	3 cut(s)	274, 553, 594
DdeI	CTNAG	4 cut(s)	15, 251, 306, 617
DinI	GGCGCC	1 cut(s)	150
DpnI	GATC	3 cut(s)	223, 477, 494
DpnII	GATC	3 cut(s)	221, 475, 492
EciI	GGCGGA	2 cut(s)	192, 204
Eco130I	CCWWGG	3 cut(s)	204, 225, 593
Eco24I	GRGCYC	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	306
Eco88I	CYCGRG	2 cut(s)	80, 349
EcoRII	CCWGG	2 cut(s)	88, 407
EcoT14I	CCWWGG	3 cut(s)	204, 225, 593
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	3 cut(s)	204, 225, 593
Esp3I	CGTCTC	1 cut(s)	592
FaeI	CATG	3 cut(s)	277, 556, 597
FaiI	YATR	7 cut(s)	41, 275, 336, 398, 554, 595, 642
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FatI	CATG	3 cut(s)	273, 552, 593
FauI	CCCGC	1 cut(s)	374
FokI	GGATG	2 cut(s)	106, 311
FriOI	GRGCYC	1 cut(s)	350
FspBI	CTAG	2 cut(s)	516, 666
GlaI	GCGC	2 cut(s)	150, 217
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	6 cut(s)	209, 304, 315, 407, 431, 560
HapII	CCGG	3 cut(s)	152, 316, 432
HgaI	GACGC	2 cut(s)	109, 609
HhaI	GCGC	2 cut(s)	151, 218
Hin1I	GRCGYC	2 cut(s)	101, 149
Hin1II	CATG	3 cut(s)	277, 556, 597
Hin6I	GCGC	2 cut(s)	149, 216
HinP1I	GCGC	2 cut(s)	149, 216
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	2 cut(s)	11, 319
HpaII	CCGG	3 cut(s)	152, 316, 432
HphI	GGTGA	3 cut(s)	446, 485, 499
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	16, 69, 240, 417, 480
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	176, 288
HpyCH4III	ACNGT	2 cut(s)	292, 634
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 183, 215, 301, 378
HpyF3I	CTNAG	4 cut(s)	15, 251, 306, 617
Hsp92I	GRCGYC	2 cut(s)	101, 149
Hsp92II	CATG	3 cut(s)	277, 556, 597
HspAI	GCGC	2 cut(s)	149, 216
KasI	GGCGCC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	221, 475, 492
LmnI	GCTCC	2 cut(s)	229, 345
Lsp1109I	GCAGC	2 cut(s)	96, 219
LweI	GCATC	2 cut(s)	84, 573
MaeI	CTAG	2 cut(s)	516, 666
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	3 cut(s)	223, 477, 494
MboI	GATC	3 cut(s)	221, 475, 492
MboII	GAAGA	3 cut(s)	430, 502, 514
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	350, 535
MluCI	AATT	2 cut(s)	442, 657
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	20, 313
MmeI	TCCRAC	1 cut(s)	616
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	3 cut(s)	363, 578, 670
MslI	CAYNNNNRTG	1 cut(s)	553
MspA1I	CMGCKG	2 cut(s)	109, 468
MspI	CCGG	3 cut(s)	152, 316, 432
MspR9I	CCNGG	3 cut(s)	90, 153, 409
MvaI	CCWGG	2 cut(s)	90, 409
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 183, 215, 301, 378
NarI	GGCGCC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	3 cut(s)	221, 475, 492
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	3 cut(s)	277, 556, 597
NlaIV	GGNNCC	4 cut(s)	129, 150, 347, 591
NmuCI	GTSAC	1 cut(s)	546
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	2 cut(s)	277, 556
OliI	CACNNNNGTG	1 cut(s)	553
PaqCI	CACCTGC	1 cut(s)	574
PciI	ACATGT	1 cut(s)	552
PflFI	GACNNNGTC	1 cut(s)	322
PleI	GAGTC	2 cut(s)	19, 313
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	19, 313
PscI	ACATGT	1 cut(s)	552
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	88, 407
PspGI	CCWGG	2 cut(s)	88, 407
PspN4I	GGNNCC	4 cut(s)	129, 150, 347, 591
PspPI	GGNCC	4 cut(s)	302, 313, 405, 558
PstNI	CAGNNNCTG	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	553
SaqAI	TTAA	3 cut(s)	363, 578, 670
Sau3AI	GATC	3 cut(s)	221, 475, 492
Sau96I	GGNCC	4 cut(s)	302, 313, 405, 558
SchI	GAGTC	2 cut(s)	20, 313
ScrFI	CCNGG	3 cut(s)	90, 153, 409
SduI	GDGCHC	2 cut(s)	350, 535
SfaNI	GCATC	2 cut(s)	84, 573
SfoI	GGCGCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	2 cut(s)	442, 657
SspDI	GGCGCC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	516, 666
StyD4I	CCNGG	3 cut(s)	88, 151, 407
StyI	CCWWGG	3 cut(s)	204, 225, 593
TaaI	ACNGT	2 cut(s)	292, 634
TaqI	TCGA	1 cut(s)	447
TasI	AATT	2 cut(s)	442, 657
TauI	GCSGC	8 cut(s)	106, 109, 177, 189, 375, 378, 381, 471
Tru1I	TTAA	3 cut(s)	363, 578, 670
Tru9I	TTAA	3 cut(s)	363, 578, 670
TscAI	CASTG	2 cut(s)	27, 143
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	2 cut(s)	109, 232
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	1 cut(s)	657
TspRI	CASTG	2 cut(s)	27, 143
Tth111I	GACNNNGTC	1 cut(s)	322
XceI	RCATGY	2 cut(s)	277, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	516, 666
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.